BAC Information

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BAC

Clone NameB6Ng01-338H05
Chromosome11 (Build37)
Map Location 32,410,333 - 32,543,618
singlet/doubletdoublet
Overlap geneUbtd2, 1700007I06Rik, Stk10, Fbxw11
Upstream gene2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b
Downstream geneLOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338H05.bB6Ng01-338H05.g
ACCGA122751GA122752
length5011,063
definitionB6Ng01-338H05.b B6Ng01-338H05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,543,112 - 32,543,618)(32,410,333 - 32,411,400)
sequence
aagagtacctagggccttgctatacaaacatccttcacggcagggtagga
aaccctttgtccaagaagcctgacaccgcaggggcccggaaaataggccc
cttatccggaacagcctcagactcgtaggcacccccaacatcccagtcca
atggggctatcctggcatccatacagcggtagcttggggcgagggtgctg
agacccacccctaccacccaccccaccccaccccaccccaccccccgcgc
ctaggttatggaggccgaagcggctccaactggtctcggactcccttcca
ccaccatcaccctcagcttgagcgaggctgggaggcgcgatgcaggcccg
gccagaggaatccagggaagggaaaaagaaatccccttctaaaaacagag
tgtgatggcaaggcaagagtgagcagtggctccggcaggagcgaggctgg
ggcgccggagactggccggagcccggcaaggagggggttgggggagccgc
g
gaattcaataggtttaattacatatttagtgcatttatatttgtatatat
aacaataataaaagaaaagaggtcataatttaaggggatatggaaaggat
ggaaaagagggaatgatatgattctattttaattaccctgctaagaggca
agaagcttggatatactgtctatgattgagtaactacttttcactgacac
cctgtgatagcaacatatggattttgggtaaacatttccatcttccaaag
tgtttaagtaaatagctttttattttttcctgagatatgcactaagtttt
tttttcatttagaaatagactttttaatgtctaaattgcaccataattta
ttgaagtatgctaaaattctttattctttgggatatacaagtgtttatca
gaactctgttatttaacttttccaagtagcttaactcacacagaaagtgt
catgcatgctgatgctataaaaatgtgtgtattgggggtcttgcagactg
gtggttactctttctaaacttgtccctttttacttctttataattagtat
aggtctttcagatatgagtctgaatttattttgtttgtgtgggtgttgcc
tgcatgtatgtctgtgcaccatgtatacacctagtgctcaaggaggtcag
aacacaacagctctcctggtgctgcaggtgctgagaactgaacttgggtt
ctctgaaagagcagcaagtaccccccctcccccttttgttttaaagattt
attttatgtatgtgctctcttcagttacaccagaagagggcatcagatct
cattatggttagttgggaggcaccatgtggttggtgggaattgaactcag
gacttctgggaggaacaagctcttaactgctgagccatctctctagcccc
accccccacccgagctgactctggagcaatgaaagtctagcagagtctta
cagcttcacagtcataagtttgccttctcttctccaggctgtgatttttc
agtcagtaggtgtgtaacagttctcttcgatcccatcagctgtgtctcac
atagtgcactgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_32543112_32543618
seq2: B6Ng01-338H05.b_46_552 (reverse)

seq1  CGCGGCTCCCCCAACCCCCTCCTTGCCGGGCTCCGGCCAGTCTCCGGCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGCTCCCCCAACCCCCTCCTTGCCGGGCTCCGGCCAGTCTCCGGCGC  50

seq1  CCCAGCCTCGCTCCTGCCGGAGCCACTGCTCACTCTTGCCTTGCCATCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTCGCTCCTGCCGGAGCCACTGCTCACTCTTGCCTTGCCATCAC  100

seq1  ACTCTGTTTTTAGAAGGGGATTTCTTTTTCCCTTCCCTGGATTCCTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTTTTTAGAAGGGGATTTCTTTTTCCCTTCCCTGGATTCCTCTGG  150

seq1  CCGGGCCTGCATCGCGCCTCCCAGCCTCGCTCAAGCTGAGGGTGATGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCCTGCATCGCGCCTCCCAGCCTCGCTCAAGCTGAGGGTGATGGTG  200

seq1  GTGGAAGGGAGTCCGAGACCAGTTGGAGCCGCTTCGGCCTCCATAACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGGGAGTCCGAGACCAGTTGGAGCCGCTTCGGCCTCCATAACCTA  250

seq1  GGCGCGGGGGGTGGGGTGGGGTGGGGTGGGGTGGGTGGTAGGGGTGGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCGGGGGGTGGGGTGGGGTGGGGTGGGGTGGGTGGTAGGGGTGGGTC  300

seq1  TCAGCACCCTCGCCCCAAGCTACCGCTGTATGGATGCCAGGATAGCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCCTCGCCCCAAGCTACCGCTGTATGGATGCCAGGATAGCCCCA  350

seq1  TTGGACTGGGATGTTGGGGGTGCCTACGAGTCTGAGGCTGTTCCGGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTGGGATGTTGGGGGTGCCTACGAGTCTGAGGCTGTTCCGGATAA  400

seq1  GGGGCCTATTTTCCGGGCCCCTGCGGTGTCAGGCTTCTTGGACAAAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTATTTTCCGGGCCCCTGCGGTGTCAGGCTTCTTGGACAAAGGGT  450

seq1  TTCCTACCCTGCCGTGAAGGATGTTTGTATAGCAAGGCCCTAGGTACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACCCTGCCGTGAAGGATGTTTGTATAGCAAGGCCCTAGGTACTCT  500

seq1  TGAATTC  507
      |||||||
seq2  TGAATTC  507

seq1: chr11_32410333_32411400
seq2: B6Ng01-338H05.g_64_1126

seq1  GAATTCAATAGGTTTAATTACATATTTAGTGCATTTATATTTGTATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGGTTTAATTACATATTTAGTGCATTTATATTTGTATATAT  50

seq1  AACAATAATAAAAGAAAAGAGGTCATAATTTAAGGGGATATGGAAAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAATAAAAGAAAAGAGGTCATAATTTAAGGGGATATGGAAAGGAT  100

seq1  GGAAAAGAGGGAATGATATGATTCTATTTTAATTACCCTGCTAAGAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAGGGAATGATATGATTCTATTTTAATTACCCTGCTAAGAGGCA  150

seq1  AGAAGCTTGGATATACTGTCTATGATTGAGTAACTACTTTTCACTGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTGGATATACTGTCTATGATTGAGTAACTACTTTTCACTGACAC  200

seq1  CCTGTGATAGCAACATATGGATTTTGGGTAAACATTTCCATCTTCCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATAGCAACATATGGATTTTGGGTAAACATTTCCATCTTCCAAAG  250

seq1  TGTTTAAGTAAATAGCTTTTTATTTTTTCCTGAGATATGCACTAAGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGTAAATAGCTTTTTATTTTTTCCTGAGATATGCACTAAGTTTT  300

seq1  TTTTTCATTTAGAAATAGACTTTTTAATGTCTAAATTGCACCATAATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATTTAGAAATAGACTTTTTAATGTCTAAATTGCACCATAATTTA  350

seq1  TTGAAGTATGCTAAAATTCTTTATTCTTTGGGATATACAAGTGTTTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTATGCTAAAATTCTTTATTCTTTGGGATATACAAGTGTTTATCA  400

seq1  GAACTCTGTTATTTAACTTTTCCAAGTAGCTTAACTCACACAGAAAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTGTTATTTAACTTTTCCAAGTAGCTTAACTCACACAGAAAGTGT  450

seq1  CATGCATGCTGATGCTATAAAAATGTGTGTATTGGGGGTCTTGCAGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGCTGATGCTATAAAAATGTGTGTATTGGGGGTCTTGCAGACTG  500

seq1  GTGGTTACTCTTTCTAAACTTGTCCCTTTTTACTTCTTTATAATTAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTACTCTTTCTAAACTTGTCCCTTTTTACTTCTTTATAATTAGTAT  550

seq1  AGGTCTTTCAGATATGAGTCTGAATTTATTTTGTTTGTGTGGGTGTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTCAGATATGAGTCTGAATTTATTTTGTTTGTGTGGGTGTTGCC  600

seq1  TGCATGTATGTCTGTGCACCATGTATACACCTAGTGCTCAAGGAGGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTATGTCTGTGCACCATGTATACACCTAGTGCTCAAGGAGGTCAG  650

seq1  AACACAACAGCTCTCCTGGTGCTGCAGGTGCTGAGAACTGAACTTGGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAACAGCTCTCCTGGTGCTGCAGGTGCTGAGAACTGAACTTGGGTT  700

seq1  CTCTGAAAGAGCAGCAAGTACCCCCCCTCCCCCTTTTGTTTTAAAGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAGAGCAGCAAGTACCCCCCCTCCCCCTTTTGTTTTAAAGATTT  750

seq1  ATTTTATGTATGTTGCTCTCTTCAGTTACACCAGAAGAGGGCATCAGATC  800
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGTATG-TGCTCTCTTCAGTTACACCAGAAGAGGGCATCAGATC  799

seq1  TCATTATGGTTAGTTGGGAGGCACCATGTGGTTGGTGGGAATTGAACTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATGGTTAGTTGGGAGGCACCATGTGGTTGGTGGGAATTGAACTCA  849

seq1  GGACCTCT-GGAGGAAC-AGCTCTTAACTGCTGAGCCATCTCTCTAGCCC  898
      |||| ||| |||||||| ||||||||||||||||||||||||||||||||
seq2  GGACTTCTGGGAGGAACAAGCTCTTAACTGCTGAGCCATCTCTCTAGCCC  899

seq1  CACCCCCCACCCGAGCTGACTCTGGAGCAATGAAAGTCTAAGCAGAGTCT  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACCCCCCACCCGAGCTGACTCTGGAGCAATGAAAGTCT-AGCAGAGTCT  948

seq1  TACAGCTTCACAGTCATAAGTTTGCC-TCTCTTCTCCCAGGCTGTGATTT  997
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  TACAGCTTCACAGTCATAAGTTTGCCTTCTCTTCT-CCAGGCTGTGATTT  997

seq1  TTCAGTCAGGTAGGTGTGTAACAGTTCTC-TCGATCCCACTCAGCTGTTG  1046
      |||||||| |||||||||||||||||||| ||||||||| ||||||| ||
seq2  TTCAGTCA-GTAGGTGTGTAACAGTTCTCTTCGATCCCA-TCAGCTG-TG  1044

seq1  TTCTTCACATAGTTGCACTGTG  1068
      |   |||||||| |||||||||
seq2  T--CTCACATAG-TGCACTGTG  1063