BAC Information

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BAC

Clone NameB6Ng01-338N18
Chromosome17 (Build37)11 (Build37)
Map Location 54,864,400 - 54,865,291101,336,705 - 101,336,810
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117
Downstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338N18.bB6Ng01-338N18.g
ACCGA123022GA123023
length892357
definitionB6Ng01-338N18.b B6Ng01-338N18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,864,400 - 54,865,291)(101,336,705 - 101,336,810)
sequence
gaattctttgcacatttctctttctttcttcctttctttcttccttcctt
cctttctttcttccttccttcctttctttctttctttctttctttctttc
tttcttcctttcttttttaagatgatttcaaaggacaagtttgatagttc
ttttactatttttcagaaactgtaagtgcatttaaaattattccttggac
catgtctttgctgcatcctttaataataccaacccttccccaatgcaaat
tttcatgctcttgttttcttaagatgtctggtgctttcaaggtatgtcat
cttgcctctcaaagagcatttttttattttgttagtgataaactttgggc
tctttggtgagctcctaaaaggactttgctttctggcccatacttattct
ctagcttcaaggtttgtcactccacactacattctaagcacatggagctg
aaaattttcccacatcctgctatgctttcatgagtttgtgtgatcattat
ttctgcctaaattgccttctctcagcactcctcaatggaggagctagaga
aaggacccaaggggctgaaagtattcgcagccccataggaggaagaacaa
caagaaccaaccagtacccccagagctcccagggactaaaccaccagcca
aagagtacacaaggagggactcaaggcttcagtcacatctgtagcagagg
atggccttgtgggatatcaatgagaagaaaggtccttggccttatgaagg
ctcaatgccccagtgtagggtaatgccaaaacagggatgcaggagtgggt
aggttagggagcagagggagggataggataggggcattttggggctggaa
atagggaaggggatctatttgaaatctataatatagaaaata
tttttaaaggagaatggagaaactgtctggagcagacatatcttattgtt
aaatgttccctaataatgaaataacataagccaggcagtggtggcacatg
cctttaatcccagcacttggaggcataggcaggtagatttctgagtttga
ggccagcctggtctacaaagtgagttccaggacagccagggcaatacaga
gaaaacatgtctcaaaaacaaacaaacaaacaaacaaaaacaaaaaataa
aaaacaaaggaaaagagaaagaacgaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaagggagggaggaagaaaggaa
gaaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_54864400_54865291
seq2: B6Ng01-338N18.b_48_939 (reverse)

seq1  TATTTTCTTTATT-TACATTTCAAATTTGATCCCTTTCCCTATTTCCAGC  49
      |||||||| |||| || |||||||| | |||||| |||||||||||||||
seq2  TATTTTCTATATTATAGATTTCAAA-TAGATCCCCTTCCCTATTTCCAGC  49

seq1  CCCAAAATGCCCCTATCCTATCCCTCCCTCTGCTCCCTAACCTACCCACT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAATGCCCCTATCCTATCCCTCCCTCTGCTCCCTAACCTACCCACT  99

seq1  CCTGCATCCCTGTTTTGGCATTACCCTACACTGGGGCATTGAGCCTTCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCCCTGTTTTGGCATTACCCTACACTGGGGCATTGAGCCTTCAT  149

seq1  AAGGCCAAGGACCTTTCTTCTCATTGATATCCCACAAGGCCATCCTCTGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAAGGACCTTTCTTCTCATTGATATCCCACAAGGCCATCCTCTGC  199

seq1  TACAGATGTGACTGAAGCCTTGAGTCCCTCCTTGTGTACTCTTTGGCTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGTGACTGAAGCCTTGAGTCCCTCCTTGTGTACTCTTTGGCTGG  249

seq1  TGGTTTAGTCCCTGGGAGCTCTGGGGGTACTGGTTGGTTCTTGTTGTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAGTCCCTGGGAGCTCTGGGGGTACTGGTTGGTTCTTGTTGTTCT  299

seq1  TCCTCCTATGGGGCTGCGAATACTTTCAGCCCCTTGGGTCCTTTCTCTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTATGGGGCTGCGAATACTTTCAGCCCCTTGGGTCCTTTCTCTAG  349

seq1  CTCCTCCATTGAGGAGTGCTGAGAGAAGGCAATTTAGGCAGAAATAATGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCATTGAGGAGTGCTGAGAGAAGGCAATTTAGGCAGAAATAATGA  399

seq1  TCACACAAACTCATGAAAGCATAGCAGGATGTGGGAAAATTTTCAGCTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAAACTCATGAAAGCATAGCAGGATGTGGGAAAATTTTCAGCTCC  449

seq1  ATGTGCTTAGAATGTAGTGTGGAGTGACAAACCTTGAAGCTAGAGAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTTAGAATGTAGTGTGGAGTGACAAACCTTGAAGCTAGAGAATAA  499

seq1  GTATGGGCCAGAAAGCAAAGTCCTTTTAGGAGCTCACCAAAGAGCCCAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGCCAGAAAGCAAAGTCCTTTTAGGAGCTCACCAAAGAGCCCAAA  549

seq1  GTTTATCACTAACAAAATAAAAAAATGCTCTTTGAGAGGCAAGATGACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCACTAACAAAATAAAAAAATGCTCTTTGAGAGGCAAGATGACAT  599

seq1  ACCTTGAAAGCACCAGACATCTTAAGAAAACAAGAGCATGAAAATTTGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAAAGCACCAGACATCTTAAGAAAACAAGAGCATGAAAATTTGCA  649

seq1  TTGGGGAAGGGTTGGTATTATTAAAGGATGCAGCAAAGACATGGTCCAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAGGGTTGGTATTATTAAAGGATGCAGCAAAGACATGGTCCAAG  699

seq1  GAATAATTTTAAATGCACTTACAGTTTCTGAAAAATAGTAAAAGAACTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTTTAAATGCACTTACAGTTTCTGAAAAATAGTAAAAGAACTAT  749

seq1  CAAACTTGTCCTTTGAAATCATCTTAAAAAAGAAAGGAAGAAAGAAAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGTCCTTTGAAATCATCTTAAAAAAGAAAGGAAGAAAGAAAGAA  799

seq1  AGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGAAAGAAAGGAAGGAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGAAAGAAAGGAAGGAAG  849

seq1  GAAGAAAGAAAGGAAGAAAGAAAGAGAAATGTGCAAAGAATTC  892
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAAAGGAAGAAAGAAAGAGAAATGTGCAAAGAATTC  892

seq1: chr11_101336705_101336810
seq2: B6Ng01-338N18.g_160_264 (reverse)

seq1  GCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTC  50
      |||||||||||||||||||||||| ||||||||||||||||||  |||||
seq2  GCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTC  50

seq1  AGAAATCTGCCTGCCTCTACCTCCCAAGTGCTGGGATTAAAGGTGTGCGC  100
      |||||||| ||||||| | ||| ||||||||||||||||||||  || ||
seq2  AGAAATCTACCTGCCTATGCCT-CCAAGTGCTGGGATTAAAGGCATGTGC  99

seq1  CACCAC  106
      ||||||
seq2  CACCAC  105