BAC Information

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BAC

Clone NameB6Ng01-339H21
Chromosome11 (Build37)
Map Location 95,871,571 - 95,903,408
singlet/doubletdoublet
Overlap geneGip, Snf8
Upstream geneSamd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040
Downstream geneUbe2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339H21.bB6Ng01-339H21.g
ACCGA123476GA123477
length6601,081
definitionB6Ng01-339H21.b B6Ng01-339H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,871,571 - 95,872,217)(95,902,333 - 95,903,408)
sequence
gaattctttctgcttttgtatcaactgctttggatgaatctccaatatac
acattgcagtttaatctaacatttacccgtgatttatatcttaaaatgtt
gatatgttctataaaagagaggacatgtacaaaaagagagagaaaaaaaa
aaacctagaaagctgttagggaaatatattagaatatttttgtgttttct
aataaatcacagttaattttgatataatcatggttgctatgagatacaac
aaaagcaaaacacttcctgacagctttgacttcaaagtttctgggcattt
tgagagttgtttatttttgttgttgtttgcctgttttattgttgttgctg
ccttgagatgttttctcccttcctgccgtctgaagtgtggttctttttaa
atgcctgtaaactttaagaaaatgtaaattagtcctagttttaaaggaca
ggcagcattttctcctgtcaaataaataaggataattatgtgtttaggat
atctcaagaaatagacgagagtcataagcagaaaagaacgctttcttcat
tcaaagcatcataaactcaaaagtgtttcaaagtttttaaaggaatgttt
ttttcaatcggaaatgtaggactcaaggaggggtggggggagggttatgc
acctaaccct
gaattcatgcagtcaggcttgcccagcaaacacctgtacacgcggagtcc
cctcactggccccagatgaccaaattttaaaatcacgaacctcagaactc
aaaggctgggctggccccaccatatttcagaaaggtgggtcaagtctacc
tacagttaaaatgagaacttggtaatgcagaccagtgtatactaggccac
cgtcctacctttcaccatggctgtagagatcggccaaagattcaacaaca
tgaaagagttaaggtgtgtctcaagaccttacaggcctgcaggctccaga
attttagaaaagacaatcagaaaattaagtccaaagcccagttcacaagt
cccaaccacccttacctccattccgatgtttgagggccaggcacacttca
ataatctggacacccagttcataatagaagtccccaacgcccagcatctc
agaccaaaagccttttccagctaaaaacagaaaaataaacgctgtattat
tcattcattttcttttttttttttttaagatttatttatttatttattat
atggaagtacattgtagctgtcttcagacactccagaagagggagtcaga
tctcgttatggatggttgtgagccaccatgtggttgctgggatttgaact
ctggaccttcagaagagcagtcgggtgctcttacccactgagccatctca
ccagccccttattcattttcatctcctctcttctctcaatgctggactga
agcatctatccagtgggaagtctctctgtagaagtcaagccctgactctt
ccccccaggctccccattcctcagaaataagactcagactcaaacctttc
ctactgcttaagtgctgcccatgcttactactgaagaagctctgagccca
ggcacatgcatgtagaatgcacaccagcaattcccagcattctgaacgag
gaggaagcaggtaggcaggttcaaagtcaccctcgctgcatagcagttct
gaagcagcttgggctatactagctctgtcttcaagtgggggttggtagca
gaatacctcagcttgaaagtgtatgggtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_95871571_95872217
seq2: B6Ng01-339H21.b_47_693

seq1  GAATTCTTTCTGCTTTTGTATCAACTGCTTTGGATGAATCTCCAATATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGCTTTTGTATCAACTGCTTTGGATGAATCTCCAATATAC  50

seq1  ACATTGCAGTTTAATCTAACATTTACCCGTGATTTATATCTTAAAATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCAGTTTAATCTAACATTTACCCGTGATTTATATCTTAAAATGTT  100

seq1  GATATGTTCTATAAAAGAGAGGACATGTACAAAAAGAGAGAGAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTTCTATAAAAGAGAGGACATGTACAAAAAGAGAGAGAAAAAAAA  150

seq1  AAACCTAGAAAGCTGTTAGGGAAATATATTAGAATATTTTTGTGTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAGAAAGCTGTTAGGGAAATATATTAGAATATTTTTGTGTTTTCT  200

seq1  AATAAATCACAGTTAATTTTGATATAATCATGGTTGCTATGAGATACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCACAGTTAATTTTGATATAATCATGGTTGCTATGAGATACAAC  250

seq1  AAAAGCAAAACACTTCCTGACAGCTTTGACTTCAAAGTTTCTGGGCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAAACACTTCCTGACAGCTTTGACTTCAAAGTTTCTGGGCATTT  300

seq1  TGAGAGTTGTTTATTTTTGTTGTTGTTTGCCTGTTTTATTGTTGTTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTGTTTATTTTTGTTGTTGTTTGCCTGTTTTATTGTTGTTGCTG  350

seq1  CCTTGAGATGTTTTCTCCCTTCCTGCCGTCTGAAGTGTGGTTCTTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGATGTTTTCTCCCTTCCTGCCGTCTGAAGTGTGGTTCTTTTTAA  400

seq1  ATGCCTGTAAACTTTAAGAAAATGTAAATTAGTCCTAGTTTTAAAGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTAAACTTTAAGAAAATGTAAATTAGTCCTAGTTTTAAAGGACA  450

seq1  GGCAGCATTTTCTCCTGTCAAATAAATAAGGATAATTATGTGTTTAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCATTTTCTCCTGTCAAATAAATAAGGATAATTATGTGTTTAGGAT  500

seq1  ATCTCAAGAAATAGACGAGAGTCATAAGCAGAAAAGAACGCTTTCTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAGAAATAGACGAGAGTCATAAGCAGAAAAGAACGCTTTCTTCAT  550

seq1  TCAAAGCATCATAAACTCAAAAGTGTTTCAAAGTTTTTAAAGGAATGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCATCATAAACTCAAAAGTGTTTCAAAGTTTTTAAAGGAATGTTT  600

seq1  TTTTCAATCGGAAATGTAGGACTCAAGGAGGGGTGGGGGGAGGGTTA  647
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATCGGAAATGTAGGACTCAAGGAGGGGTGGGGGGAGGGTTA  647

seq1: chr11_95902333_95903408
seq2: B6Ng01-339H21.g_66_1146 (reverse)

seq1  ATCACCCAT-CACTTTTCCAGCTGAGTTATTCTGCTACCCACCCCCACTT  49
      ||||||||| ||| |||| ||||||| |||||||||||| ||||||||||
seq2  ATCACCCATACAC-TTTCAAGCTGAGGTATTCTGCTACCAACCCCCACTT  49

seq1  GGAGACAGGAGCTGGTATAGCCCAAGCTGGCTTCAGACTTGCTATGCAGC  99
      | ||||| ||||| |||||||||||||| ||||||||  |||||||||||
seq2  GAAGACA-GAGCTAGTATAGCCCAAGCT-GCTTCAGAACTGCTATGCAGC  97

seq1  GAGGGTGACTTTGAACCTGCCTCCCTTGCTTCCTCCTCGTTCAGAATGCT  149
      |||||||||||||||||||||| || ||||||||||||||||||||||||
seq2  GAGGGTGACTTTGAACCTGCCTACC-TGCTTCCTCCTCGTTCAGAATGCT  146

seq1  GGG-ATTGCTGGTGTGCATTCTACATGCATGTGCCT-GGCTCAGAGC-TC  196
      ||| |||||||||||||||||||||||||||||||| |||||||||| ||
seq2  GGGAATTGCTGGTGTGCATTCTACATGCATGTGCCTGGGCTCAGAGCTTC  196

seq1  TTCAGTAGTAAGCAT-GGCAGCACTT-AGCAGTAGG-AAGGTTTGAGTCT  243
      ||||||||||||||| |||||||||| ||||||||| |||||||||||||
seq2  TTCAGTAGTAAGCATGGGCAGCACTTAAGCAGTAGGAAAGGTTTGAGTCT  246

seq1  GAGTCTTATTTCTG-GGAATGGGG-GCCTGGGGGGAAGAGTCAGGGCTTG  291
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  GAGTCTTATTTCTGAGGAATGGGGAGCCTGGGGGGAAGAGTCAGGGCTTG  296

seq1  ACTTCTACAGAGAGACTTCCCACTGGATAGATGCTTCAGTCCAGCATTGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTACAGAGAGACTTCCCACTGGATAGATGCTTCAGTCCAGCATTGA  346

seq1  GAGAAGAGAGGAGATGAAAATGAATAAGGGGCTGGTGAGATGGCTCAGTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGAGGAGATGAAAATGAATAAGGGGCTGGTGAGATGGCTCAGTG  396

seq1  GGTAAGAGCACCCGACTGCTCTTCTGAAGGTCCAGAGTTCAAATCCCAGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGCACCCGACTGCTCTTCTGAAGGTCCAGAGTTCAAATCCCAGC  446

seq1  AACCACATGGTGGCTCACAACCATCCATAACGAGATCTGACTCCCTCTTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATGGTGGCTCACAACCATCCATAACGAGATCTGACTCCCTCTTC  496

seq1  TGGAGTGTCTGAAGACAGCTACAATGTACTTCCATATAATAAATAAATAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTCTGAAGACAGCTACAATGTACTTCCATATAATAAATAAATAA  546

seq1  ATAAATCTTAAAAAAAAAAAAAAGAAAATGAATGAATAATACAGCGTTTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTTAAAAAAAAAAAAAAGAAAATGAATGAATAATACAGCGTTTA  596

seq1  TTTTTCTGTTTTTAGCTGGAAAAGGCTTTTGGTCTGAGATGCTGGGCGTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTTTTTAGCTGGAAAAGGCTTTTGGTCTGAGATGCTGGGCGTT  646

seq1  GGGGACTTCTATTATGAACTGGGTGTCCAGATTATTGAAGTGTGCCTGGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTCTATTATGAACTGGGTGTCCAGATTATTGAAGTGTGCCTGGC  696

seq1  CCTCAAACATCGGAATGGAGGTAAGGGTGGTTGGGACTTGTGAACTGGGC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACATCGGAATGGAGGTAAGGGTGGTTGGGACTTGTGAACTGGGC  746

seq1  TTTGGACTTAATTTTCTGATTGTCTTTTCTAAAATTCTGGAGCCTGCAGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACTTAATTTTCTGATTGTCTTTTCTAAAATTCTGGAGCCTGCAGG  796

seq1  CCTGTAAGGTCTTGAGACACACCTTAACTCTTTCATGTTGTTGAATCTTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGGTCTTGAGACACACCTTAACTCTTTCATGTTGTTGAATCTTT  846

seq1  GGCCGATCTCTACAGCCATGGTGAAAGGTAGGACGGTGGCCTAGTATACA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGATCTCTACAGCCATGGTGAAAGGTAGGACGGTGGCCTAGTATACA  896

seq1  CTGGTCTGCATTACCAAGTTCTCATTTTAACTGTAGGTAGACTTGACCCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTGCATTACCAAGTTCTCATTTTAACTGTAGGTAGACTTGACCCA  946

seq1  CCTTTCTGAAATATGGTGGGGCCAGCCCAGCCTTTGAGTTCTGAGGTTCG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGAAATATGGTGGGGCCAGCCCAGCCTTTGAGTTCTGAGGTTCG  996

seq1  TGATTTTAAAATTTGGTCATCTGGGGCCAGTGAGGGGACTCCGCGTGTAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAAAATTTGGTCATCTGGGGCCAGTGAGGGGACTCCGCGTGTAC  1046

seq1  AGGTGTTTGCTGGGCAAGCCTGACTGCATGAATTC  1076
      |||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTGCTGGGCAAGCCTGACTGCATGAATTC  1081