BAC Information

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BAC

Clone NameB6Ng01-339P01
Chromosome11 (Build37)
Map Location 17,917,320 - 17,918,480
singlet/doubletsinglet
Overlap genenone
Upstream gene1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748, Etaa1, LOC327871
Downstream geneLOC627696, LOC627716, LOC665796, Meis1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339P01.bB6Ng01-339P01.g
ACCGA123795GA123796
length1,158144
definitionB6Ng01-339P01.b B6Ng01-339P01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcactggacctgaaacacagcatttaagctagactgactggttg
ggaagtcctagccatccttttagctctgctgcctataggactgggcaaca
ggcatatacggccacactcatgcttttactctagtctgtaggatccaagt
tcagttcttcaagcttgtatagcaggaagctcttagccagtaagctatct
tcccagcatgcattagattcttgttcttggagattatttaaattctcata
gactctagtagtttgctatcaataaaatgaaaagctcaatggtgcctata
tggtgctatccttggaacaaatagcatattttttaaccagcaaatagtct
attgatcaatggtttctaagacacagtatttataataggtatggctacaa
atagttgccaatctctctataaagatcttggaagtactattcactatctg
atattatattggaagaaagtgccttattctgagatcttgaatcatgattt
agtgtttgtgtctttgcaaaacgtctcttagtcactcctgtcagatctga
tgcactgaaaactcagaaacagagctttgcttgatagccggatatcaaag
gggcctcgaatcaggaggaagaggctcaattttagtttacaaataatctt
gcatgtttcaaaaatctaagtcaggtgtgtgcattgtcagatctcatgga
gcaaacatatcaaccctctgatttgcaacaaatatgtcattatgttcttt
ttaacataacctgaagtttcaggacaggcacttcttctttagaccatgaa
gacttggcctatagtttcctacagcctctggttcttctgatctaagataa
atacaaacagtcggtactcaatcttctgcccttctaagccttgcacttct
ctcacagtttaagaagacagttggcattttaccaaaaacactaaccattt
gagaagtcattttgtcttttctgatcttagtatgtctgtagaaaacatgc
aagctcttttcttccagaagtgattgtctgcaaaatcattacttcagctc
tgtgagtattgtggctttgcatttcctctctgcacaaatatctcattgtt
ctggcttgcaacaatgttgtggtagaagtttatgtctcgtaatctcattc
catgatct

ctgcagccccattcagagctgggtgtgataatctgtgcctataacccagg
tgctggaggggcagaaaccagaggctcctgggacagtcattctagccaat
tgttgagctcgagggaggaagggtaggaaaggagagaaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_17917320_17918480
seq2: B6Ng01-339P01.b_46_1203

seq1  GAATTCTCACTGGACCTGAAACACAGCATTTAAGCTAGACTGACTGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTGGACCTGAAACACAGCATTTAAGCTAGACTGACTGGTTG  50

seq1  GGAAGTCCTAGCCATCCTTTTAGCTCTGCTGCCTATAGGACTGGGCAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCCTAGCCATCCTTTTAGCTCTGCTGCCTATAGGACTGGGCAACA  100

seq1  GGCATATACGGCCACACTCATGCTTTTACTCTAGTCTGTAGGATCCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATACGGCCACACTCATGCTTTTACTCTAGTCTGTAGGATCCAAGT  150

seq1  TCAGTTCTTCAAGCTTGTATAGCAGGAAGCTCTTAGCCAGTAAGCTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTTCAAGCTTGTATAGCAGGAAGCTCTTAGCCAGTAAGCTATCT  200

seq1  TCCCAGCATGCATTAGATTCTTGTTCTTGGAGATTATTTAAATTCTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCATGCATTAGATTCTTGTTCTTGGAGATTATTTAAATTCTCATA  250

seq1  GACTCTAGTAGTTTGCTATCAATAAAATGAAAAGCTCAATGGTGCCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAGTAGTTTGCTATCAATAAAATGAAAAGCTCAATGGTGCCTATA  300

seq1  TGGTGCTATCCTTGGAACAAATAGCATATTTTTTAACCAGCAAATAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTATCCTTGGAACAAATAGCATATTTTTTAACCAGCAAATAGTCT  350

seq1  ATTGATCAATGGTTTCTAAGACACAGTATTTATAATAGGTATGGCTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCAATGGTTTCTAAGACACAGTATTTATAATAGGTATGGCTACAA  400

seq1  ATAGTTGCCAATCTCTCTATAAAGATCTTGGAAGTACTATTCACTATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGCCAATCTCTCTATAAAGATCTTGGAAGTACTATTCACTATCTG  450

seq1  ATATTATATTGGAAGAAAGTGCCTTATTCTGAGATCTTGAATCATGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATATTGGAAGAAAGTGCCTTATTCTGAGATCTTGAATCATGATTT  500

seq1  AGTGTTTGTGTCTTTGCAAAACGTCTCTTAGTCACTCCTGTCAGATCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTGTGTCTTTGCAAAACGTCTCTTAGTCACTCCTGTCAGATCTGA  550

seq1  TGCACTGAAAACTCAGAAACAGAGCTTTGCTTGATAGCCGGATATCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGAAAACTCAGAAACAGAGCTTTGCTTGATAGCCGGATATCAAAG  600

seq1  GGGCCTCGAATCAGGAGGAAGAGGCTCAATTTTAGTTTACAAATAATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCGAATCAGGAGGAAGAGGCTCAATTTTAGTTTACAAATAATCTT  650

seq1  GCATGTTTCAAAAATCTAAGTCAGGTGTGTGCATTGTCAGATCTCATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTCAAAAATCTAAGTCAGGTGTGTGCATTGTCAGATCTCATGGA  700

seq1  GCAAACATATCAACCCTCTGATTTGCAACAAATATGTCATTATGTTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACATATCAACCCTCTGATTTGCAACAAATATGTCATTATGTTCTTT  750

seq1  TTAACATAACCTGAAGTTTCAGGACAGGCACTTCTTCTTTAGACCATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATAACCTGAAGTTTCAGGACAGGCACTTCTTCTTTAGACCATGAA  800

seq1  GACTTGGCCTATAGTTTCCTACAGCCTCTGGTTCTTCTGATCTAAGATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGCCTATAGTTTCCTACAGCCTCTGGTTCTTCTGATCTAAGATAA  850

seq1  ATACAAACAGTCGGTACTCAATCTTCTGCCCTTCTAAGCCTTGCACTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACAGTCGGTACTCAATCTTCTGCCCTTCTAAGCCTTGCACTTCT  900

seq1  CTCACAGTTTAAGAAGACAGTTGGCATTTTACCAAAAACACTAACCATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTTTAAGAAGACAGTTGGCATTTTACCAAAAACACTAACCATTT  950

seq1  GAGAAGTCATTTTGTCTTTTCTTGATCTTAGTATGTCTGTAG-AAACATG  999
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  GAGAAGTCATTTTGTCTTTTC-TGATCTTAGTATGTCTGTAGAAAACATG  999

seq1  CAGGCTCTTTCTTCCCAGAAGTGATTGTCTTGCAAAATCATTACTTCAGC  1049
      || |||||||  | ||||||||||||||| ||||||||||||||||||| 
seq2  CAAGCTCTTTTCTTCCAGAAGTGATTGTC-TGCAAAATCATTACTTCAG-  1047

seq1  CTCTTGGTGAGTATTGTGGCTTTGCATTT-CTCTCTGCAC-AATATCTCA  1097
      ||||  ||||||||||||||||||||||| |||||||||| |||||||||
seq2  CTCT--GTGAGTATTGTGGCTTTGCATTTCCTCTCTGCACAAATATCTCA  1095

seq1  TTG-TCT-GCCTGCAAC-ATGTTGT-GTAGAAGTTAGGGTCTCGTTATTC  1143
      ||| ||| || |||||| ||||||| |||||||||   ||||||| |   
seq2  TTGTTCTGGCTTGCAACAATGTTGTGGTAGAAGTTTATGTCTCGTAA---  1142

seq1  CTCCCATCCCCATGATCT  1161
       || |||  |||||||||
seq2  -TCTCAT-TCCATGATCT  1158


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