BAC Information

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BAC

Clone NameB6Ng01-340G11
Chromosome11 (Build37)
Map Location 86,860,962 - 87,016,068
singlet/doubletdoublet
Overlap geneGdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37
Upstream geneBrip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2
Downstream genePpm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340G11.bB6Ng01-340G11.g
ACCGA124122GA124123
length1,1251,181
definitionB6Ng01-340G11.b B6Ng01-340G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,014,951 - 87,016,068)(86,860,962 - 86,862,167)
sequence
gaattctattagctacattgtatatattgtacgtactgatgaaagtatat
acttatgcatccaaaacagtactggttccgtactgagagtgagacagagg
agaaacttcatcagcgcctgctgcaggcatgagaacgtctatctacccac
gactacattcacacaagctaacgtgacagagcccctgcactggagcttta
ttagcgctttctccacagcgcagctatttctgaacaaatgaacagctcaa
gctctttactgaagtcttgtaagagcctgggttaaacactgttgtctctg
acttcatctcagtctgccctgcctgattctccacatccactcatgccagt
cttgctttaacccttcaatgtcaattttacaccagtgaatttgcatttct
gtcctgtttatacagaacactgcttccccccggcatttgaagggctcagc
tcaaatgtgctctttacaaagactgtctctgcctctccaaaactaggcat
tcttcatctgctcttgtttcatggtggtagtattcattaacattatgttc
actcatttatttacatactttactgtctgattcttatcactacaatgaaa
catccataaggttaccaaagtgtcatttaatgccaagaacacgtgaaagg
agagaactgactctataaagccagttctcttacctccagaaggtaccgtg
tgtgcacgtacaaacttacacaaaaaaataatttaagaaacaaaaaataa
tttaaaaaagaaaaatgttcgtgctggagagatggctcagcggttaagag
cactgactgctcttccagaggtcctgagtttaattcccagcaaccacaag
gtggctcacaaccatctgtaatgggatctgatgcccaattctggtgtgtc
aaggcacatgggagaaaattacaggaacttcgtcacttacgggttcggta
tgtaacagccagccactgatgactttgctagaagctccattccaaatcct
gtaatctaccagagttttccggttcactagctagtccgagctgcctggtc
agcacataaataggtttgtctgccatgtctgtgaaagcaacacttgctgg
ccctttatatacgagacagcgtagt
gaattcataattctgaactatagtattgagtacactcttatctgtttacc
actactgagggtttggctctgctcttgaaattgctttctgaaaacgctaa
gttaaattctataaaattgtaatacctgaaacagaagaagttatgcttat
taaataatttggctactaaggagatggctcatagagacaatctcttaccg
attaaagcctagttaaacaagtgttaacggagtttttggcttttgagaat
gccagtaaggcccttgaaggcccagcaagctccttagaggagtggctggt
tgtaaggcatgaagcctatttcagtccaaaaacccacaagtatatgccat
tctaaatagttttattagacttaaaatgaatctcttcatataattaccga
ttctcaatatgcagaaggggttgtactgcacattaaaactgctgaactca
ttcctgacaattcagaattaaccttgtgattcatgcaactgcatcaaaca
gttgctgaaagatctaactgcactctgaaagagatgtttttaaacaaaag
cgggatgtgagggctcccagagctagactgcatacggctttactagcttt
aaatgcgagtgaaggagggacaacagctgctaaaaggcattggattgcgg
aaaacctgctgagctgagtcagcctgtgtactgcaaggatgctggagcat
tacaacagaaaccagcaaaggtgtctggatggggctgctgttaccggtct
gtttctccaggagactaaaagctatggataccatcgacagctctgctccc
tgctgcgctgcctgtggtaactgtacaggtaacagggaccaaccctacct
atcaggcctattccaacccccctattaacagaggagtaagttggggagat
agtaatatccttgtaatggttactgcatcttcttggctacctgaccctta
tcaccaccaaggaccagctaagctgtaggggagggtaaggaaattataat
tatactgcgggagtacaggacaacttcagtgtgtatctacagtcatacta
ccagacttatatatataatataattttatattgctccatgcattggtttc
agggaacaggagattgggtacagttcatactctgccattttagaggtact
gactgatacgtgcaacaggtccagtgctcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_87014951_87016068
seq2: B6Ng01-340G11.b_48_1172 (reverse)

seq1  ACTACGCTG--TCAGATATAAAGGG-CAGC-AGTGTTGCTTCCACAGACA  46
      |||||||||  ||  |||||||||| |||| |||||||||| ||||||||
seq2  ACTACGCTGTCTCGTATATAAAGGGCCAGCAAGTGTTGCTTTCACAGACA  50

seq1  T-GCAGACAAACCTA-TTCTGTGCTGACCAGGCAGCTCTGACTACCT-GT  93
      | ||||||||||||| || ||||||||||||||||||| ||||| || ||
seq2  TGGCAGACAAACCTATTTATGTGCTGACCAGGCAGCTCGGACTAGCTAGT  100

seq1  GGACCCGAAAACTCTGGTAGATTACAGGATTTGGGAATGGAGCTTCTAGC  143
      | ||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  GAACCGGAAAACTCTGGTAGATTACAGGATTT-GGAATGGAGCTTCTAGC  149

seq1  AAAGTCATCAGTGGCTGGCTGTTACATA-CGAAACCGTAAGTGACGAAGT  192
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  AAAGTCATCAGTGGCTGGCTGTTACATACCGAACCCGTAAGTGACGAAGT  199

seq1  TCCTGTAATTTTCTCCCATGTGCCTTGACACACCAGAATTGGGCATCAGA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAATTTTCTCCCATGTGCCTTGACACACCAGAATTGGGCATCAGA  249

seq1  TCCCATTACAGATGGTTGTGAGCCACCTTGTGGTTGCTGGGAATTAAACT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTACAGATGGTTGTGAGCCACCTTGTGGTTGCTGGGAATTAAACT  299

seq1  CAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTC  349

seq1  CAGCACGAACATTTTTCTTTTTTAAATTATTTTTTGTTTCTTAAATTATT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACGAACATTTTTCTTTTTTAAATTATTTTTTGTTTCTTAAATTATT  399

seq1  TTTTTGTGTAAGTTTGTACGTGCACACACGGTACCTTCTGGAGGTAAGAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGTAAGTTTGTACGTGCACACACGGTACCTTCTGGAGGTAAGAG  449

seq1  AACTGGCTTTATAGAGTCAGTTCTCTCCTTTCACGTGTTCTTGGCATTAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCTTTATAGAGTCAGTTCTCTCCTTTCACGTGTTCTTGGCATTAA  499

seq1  ATGACACTTTGGTAACCTTATGGATGTTTCATTGTAGTGATAAGAATCAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACTTTGGTAACCTTATGGATGTTTCATTGTAGTGATAAGAATCAG  549

seq1  ACAGTAAAGTATGTAAATAAATGAGTGAACATAATGTTAATGAATACTAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAGTATGTAAATAAATGAGTGAACATAATGTTAATGAATACTAC  599

seq1  CACCATGAAACAAGAGCAGATGAAGAATGCCTAGTTTTGGAGAGGCAGAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGAAACAAGAGCAGATGAAGAATGCCTAGTTTTGGAGAGGCAGAG  649

seq1  ACAGTCTTTGTAAAGAGCACATTTGAGCTGAGCCCTTCAAATGCCGGGGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTTGTAAAGAGCACATTTGAGCTGAGCCCTTCAAATGCCGGGGG  699

seq1  GAAGCAGTGTTCTGTATAAACAGGACAGAAATGCAAATTCACTGGTGTAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGTGTTCTGTATAAACAGGACAGAAATGCAAATTCACTGGTGTAA  749

seq1  AATTGACATTGAAGGGTTAAAGCAAGACTGGCATGAGTGGATGTGGAGAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACATTGAAGGGTTAAAGCAAGACTGGCATGAGTGGATGTGGAGAA  799

seq1  TCAGGCAGGGCAGACTGAGATGAAGTCAGAGACAACAGTGTTTAACCCAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAGGGCAGACTGAGATGAAGTCAGAGACAACAGTGTTTAACCCAG  849

seq1  GCTCTTACAAGACTTCAGTAAAGAGCTTGAGCTGTTCATTTGTTCAGAAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTACAAGACTTCAGTAAAGAGCTTGAGCTGTTCATTTGTTCAGAAA  899

seq1  TAGCTGCGCTGTGGAGAAAGCGCTAATAAAGCTCCAGTGCAGGGGCTCTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCGCTGTGGAGAAAGCGCTAATAAAGCTCCAGTGCAGGGGCTCTG  949

seq1  TCACGTTAGCTTGTGTGAATGTAGTCGTGGGTAGATAGACGTTCTCATGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTTAGCTTGTGTGAATGTAGTCGTGGGTAGATAGACGTTCTCATGC  999

seq1  CTGCAGCAGGCGCTGATGAAGTTTCTCCTCTGTCTCACTCTCAGTACGGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCAGGCGCTGATGAAGTTTCTCCTCTGTCTCACTCTCAGTACGGA  1049

seq1  ACCAGTACTGTTTTGGATGCATAAGTATATACTTTCATCAGTACGTACAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTACTGTTTTGGATGCATAAGTATATACTTTCATCAGTACGTACAA  1099

seq1  TATATACAATGTAGCTAATAGAATTC  1118
      ||||||||||||||||||||||||||
seq2  TATATACAATGTAGCTAATAGAATTC  1125

seq1: chr11_86860962_86862167
seq2: B6Ng01-340G11.g_67_1247

seq1  GAATTCATAATTCTGAACTATAGTATTGAGTACACTCTTATCTGTTTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATTCTGAACTATAGTATTGAGTACACTCTTATCTGTTTACC  50

seq1  ACTACTGAGGGTTTGGCTCTGCTCTTGAAATTGCTTTCTGAAAACGCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGAGGGTTTGGCTCTGCTCTTGAAATTGCTTTCTGAAAACGCTAA  100

seq1  GTTAAATTCTATAAAATTGTAATACCTGAAACAGAAGAAGTTATGCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATTCTATAAAATTGTAATACCTGAAACAGAAGAAGTTATGCTTAT  150

seq1  TAAATAATTTGGCTACTAAGGAGATGGCTCATAGAGACAATCTCTTACCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATTTGGCTACTAAGGAGATGGCTCATAGAGACAATCTCTTACCG  200

seq1  ATTAAAGCCTAGTTAAACAAGTGTTAACGGAGTTTTTGGCTTTTGAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGCCTAGTTAAACAAGTGTTAACGGAGTTTTTGGCTTTTGAGAAT  250

seq1  GCCAGTAAGGCCCTTGAAGGCCCAGCAAGCTCCTTAGAGGAGTGGCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAAGGCCCTTGAAGGCCCAGCAAGCTCCTTAGAGGAGTGGCTGGT  300

seq1  TGTAAGGCATGAAGCCTATTTCAGTCCAAAAACCCACAAGTATATGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGCATGAAGCCTATTTCAGTCCAAAAACCCACAAGTATATGCCAT  350

seq1  TCTAAATAGTTTTATTAGACTTAAAATGAATCTCTTCATATAATTACCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATAGTTTTATTAGACTTAAAATGAATCTCTTCATATAATTACCGA  400

seq1  TTCTCAATATGCAGAAGGGGTTGTACTGCACATTAAAACTGCTGAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATATGCAGAAGGGGTTGTACTGCACATTAAAACTGCTGAACTCA  450

seq1  TTCCTGACAATTCAGAATTAACCTTGTGATTCATGCAACTGCATCAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACAATTCAGAATTAACCTTGTGATTCATGCAACTGCATCAAACA  500

seq1  GTTGCTGAAAGATCTAACTGCACTCTGAAAGAGATGTTTTTAAACAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGAAAGATCTAACTGCACTCTGAAAGAGATGTTTTTAAACAAAAG  550

seq1  CGGGATGTGAGGGCTCCCAGAGCTAGACTGCATACGGCTTTACTAGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGATGTGAGGGCTCCCAGAGCTAGACTGCATACGGCTTTACTAGCTTT  600

seq1  AAATGCGAGTGAAGGAGGGACAACAGCTGCTAAAAGGCATTGGATTGCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCGAGTGAAGGAGGGACAACAGCTGCTAAAAGGCATTGGATTGCGG  650

seq1  AAAACCTGCTGAGCTGAGTCAGCCTGTGTACTGCAAGGATGCTGGAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGCTGAGCTGAGTCAGCCTGTGTACTGCAAGGATGCTGGAGCAT  700

seq1  TACAACAGAAACCAGCAAAGGTGTCTGGATGGGGCTGCTGTTACCGGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGAAACCAGCAAAGGTGTCTGGATGGGGCTGCTGTTACCGGTCT  750

seq1  GTTTCTCCAGGAGACTAAAAGCTATGGATACCATCGACAGCTCTGCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCAGGAGACTAAAAGCTATGGATACCATCGACAGCTCTGCTCCC  800

seq1  TGCTGCGCTGCCTGTGGTAACTGTACAGGTAACAGGGACCAACCCTACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCGCTGCCTGTGGTAACTGTACAGGTAACAGGGACCAACCCTACCT  850

seq1  ATCAGGCCTATTCCCAACCCCCCTATTAACAGAGGAGTAAGTTGGGGAGA  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCCTATT-CCAACCCCCCTATTAACAGAGGAGTAAGTTGGGGAGA  899

seq1  TAGTAATATCCTTGTAATGGTTACTGCATCTTCTTGGCTACCTGACCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATATCCTTGTAATGGTTACTGCATCTTCTTGGCTACCTGACCCTT  949

seq1  ATCACCACCAAGGACCAGCTAAGCCTGTAGGGGAGGGTAAGGAAATTATA  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  ATCACCACCAAGGACCAGCTAAG-CTGTAGGGGAGGGTAAGGAAATTAT-  997

seq1  AATTATACTGCGGGAGTACAAGGACAACTTTCAAGTGTGGTTATCTACAG  1050
      ||||||||||||||||||| ||||||||||   ||||||  |||||||||
seq2  AATTATACTGCGGGAGTAC-AGGACAACTT--CAGTGTG--TATCTACAG  1042

seq1  TTAATACTACCCAAGACTTATATATATATATATAATTTTATA-TGCTCCA  1099
       | ||||||||  ||||||||||||||| ||||||||||||| |||||||
seq2  -TCATACTACC--AGACTTATATATATA-ATATAATTTTATATTGCTCCA  1088

seq1  TGCATTTGGTTTTCAGGG-ACAGGAGATTGGTGTTACTAGTTCCATACAT  1148
      ||||||  | |||||||| |||||||||||  | ||| |||| ||||| |
seq2  TGCATT--GGTTTCAGGGAACAGGAGATTG--GGTAC-AGTT-CATAC-T  1131

seq1  CTGCCATTTTTTAAGATGTATCTGACTGAATACACTGGCAACAGTGTCCA  1198
      ||||||||||   ||| ||| |||||||   | ||  ||||||| |||||
seq2  CTGCCATTTT---AGAGGTA-CTGACTG---ATACGTGCAACAG-GTCCA  1173

seq1  GTGCTCGT  1206
      ||||||||
seq2  GTGCTCGT  1181