BAC Information

Click to search

BAC

Clone NameB6Ng01-340G14
Chromosome11 (Build37)
Map Location 102,168,958 - 102,318,867
singlet/doubletdoublet
Overlap geneUbtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b
Upstream genePsme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik
Downstream geneMdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340G14.bB6Ng01-340G14.g
ACCGA124126GA124127
length131898
definitionB6Ng01-340G14.b B6Ng01-340G14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,318,737 - 102,318,867)(102,168,958 - 102,169,851)
sequence
cttccctgcctccctggtggtggcagcagaagaaggtgacagggagcagg
aagacttggacagatgggtctccaggctggagcacacctatgaggtaggg
aggagcctctgggtaagattggggggggggg
gaattcctgccatccctctgggtctttggttagcctatctgagtgacagg
taattctccctggacaaatgtgaccattcaagcacagcagtggagactgc
cagcctagccaggccctacaagtctcctggtccttgcttgaacgaagagc
acccagtctacacaaactgtctactatgtaaccttggcaaatgacttgat
accttggcttgcttagctttaaaaaatgtcagtacccactgccccgcagg
acttcccagtccctgcaggcactcccttccaaggtgcctttgtcctctct
ctcaccttgacccagaggtccaagtgcaccttgtactgcctctgttgctc
ctccgccagcttcttatagtgctccttctggctctgggagatgcgctgcc
agcggctgccaatctccaccatgcgctccttcagcggcaggtgatttagc
tccccattggacagcagctcctgggagaacttctggtaaccgttcctgca
gcgtggggtgacagggacagtcagggtcctaagggagccgccttctaagc
cctgtctacaccataggtcccagcctcaggcttacataggaggtttcttg
ggttctccctggaacttcatcttcttggaagagtttgtagcagctggagg
ggcccgcatctcacttaactctctctgtggagagagacggagaggtcaca
cccacacccgcactcccccaccccactggcgggggagatctcaactcggc
agagattaaggcaggaggagctagagctggtagtggtagctagctgggat
ccatagcaggactcttctcaaaacaactgctgggacaagtcacttgcacc
aagaggggtcgtttcaaaaatgttccctgaaatggaagtagtcccgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102318737_102318867
seq2: B6Ng01-340G14.b_47_177 (reverse)

seq1  CCCCCCCCCCCAATCTTACCCAGAGGCTCCTCCCTACCTCATAGGTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCAATCTTACCCAGAGGCTCCTCCCTACCTCATAGGTGTGC  50

seq1  TCCAGCCTGGAGACCCATCTGTCCAAGTCTTCCTGCTCCCTGTCACCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCTGGAGACCCATCTGTCCAAGTCTTCCTGCTCCCTGTCACCTTC  100

seq1  TTCTGCTGCCACCACCAGGGAGGCAGGGAAG  131
      |||||||||||||||||||||||||||||||
seq2  TTCTGCTGCCACCACCAGGGAGGCAGGGAAG  131

seq1: chr11_102168958_102169851
seq2: B6Ng01-340G14.g_73_970

seq1  GAATTCCTGCCATCCCTCTGGGTCTTTGGTTAGCCTATCTGAGTGACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCATCCCTCTGGGTCTTTGGTTAGCCTATCTGAGTGACAGG  50

seq1  TAATTCTCCCTGGACAAATGTGACCATTCAAGCACAGCAGTGGAGACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCCCTGGACAAATGTGACCATTCAAGCACAGCAGTGGAGACTGC  100

seq1  CAGCCTAGCCAGGCCCTACAAGTCTCCTGGTCCTTGCTTGAACGAAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGCCAGGCCCTACAAGTCTCCTGGTCCTTGCTTGAACGAAGAGC  150

seq1  ACCCAGTCTACACAAACTGTCTACTATGTAACCTTGGCAAATGACTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTCTACACAAACTGTCTACTATGTAACCTTGGCAAATGACTTGAT  200

seq1  ACCTTGGCTTGCTTAGCTTTAAAAAATGTCAGTACCCACTGCCCCGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGCTTGCTTAGCTTTAAAAAATGTCAGTACCCACTGCCCCGCAGG  250

seq1  ACTTCCCAGTCCCTGCAGGCACTCCCTTCCAAGGTGCCTTTGTCCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCAGTCCCTGCAGGCACTCCCTTCCAAGGTGCCTTTGTCCTCTCT  300

seq1  CTCACCTTGACCCAGAGGTCCAAGTGCACCTTGTACTGCCTCTGTTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTGACCCAGAGGTCCAAGTGCACCTTGTACTGCCTCTGTTGCTC  350

seq1  CTCCGCCAGCTTCTTATAGTGCTCCTTCTGGCTCTGGGAGATGCGCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCCAGCTTCTTATAGTGCTCCTTCTGGCTCTGGGAGATGCGCTGCC  400

seq1  AGCGGCTGCCAATCTCCACCATGCGCTCCTTCAGCGGCAGGTGATTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCTGCCAATCTCCACCATGCGCTCCTTCAGCGGCAGGTGATTTAGC  450

seq1  TCCCCATTGGACAGCAGCTCCTGGGAGAACTTCTGGTAACCGTTCCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATTGGACAGCAGCTCCTGGGAGAACTTCTGGTAACCGTTCCTGCA  500

seq1  GCGTGGGGTGACAGGGACAGTCAGGGTCCTAAGGGAGCCGCCTTCTAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGGGTGACAGGGACAGTCAGGGTCCTAAGGGAGCCGCCTTCTAAGC  550

seq1  CCTGTCTACACCATAGGTCCCAGCCTCAGGCTTACATAGGAGGTTTCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTACACCATAGGTCCCAGCCTCAGGCTTACATAGGAGGTTTCTTG  600

seq1  GGTTCTCCCTGGAACTTCATCTTCTTGGAAGAGTTTGTAGCAGCTGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCCCTGGAACTTCATCTTCTTGGAAGAGTTTGTAGCAGCTGGAGG  650

seq1  GGCCCGCATCTCACTTAACTCTCTCTGTGGAGAGAGACGGAGAGGTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCGCATCTCACTTAACTCTCTCTGTGGAGAGAGACGGAGAGGTCACA  700

seq1  CCCACACCCGCACT-CCCCACCCCACTGGCGGGGGAGATCTCAACTCGGC  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCACACCCGCACTCCCCCACCCCACTGGCGGGGGAGATCTCAACTCGGC  750

seq1  AGAGATTAAGGCAGGAGGAGCTAGAGCTGGTAGTGGTAGCTAGCTGGGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTAAGGCAGGAGGAGCTAGAGCTGGTAGTGGTAGCTAGCTGGGAT  800

seq1  CCATAGCAGGACTCTTCTCAAAACAACTGCT-GGACAAGTCAC-TGCACC  847
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  CCATAGCAGGACTCTTCTCAAAACAACTGCTGGGACAAGTCACTTGCACC  850

seq1  AAGA-GGGTCGTTTCAAAAATGTTCCCTGAAATGGAAGTAGTCCCGTC  894
      |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGGTCGTTTCAAAAATGTTCCCTGAAATGGAAGTAGTCCCGTC  898