BAC Information

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BAC

Clone NameB6Ng01-341F04
Chromosome11 (Build37)
Map Location 115,730,275 - 115,892,258
singlet/doubletdoublet
Overlap geneRecql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk
Upstream geneGprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2
Downstream geneUnc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341F04.bB6Ng01-341F04.g
ACCGA124737GA124738
length367890
definitionB6Ng01-341F04.b B6Ng01-341F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,891,892 - 115,892,258)(115,730,275 - 115,731,164)
sequence
aagcatgggtgatcctcgtggacaatctaacaggccttaaagatacaaaa
ggcctccggtgcacagagtctcctcccgagacttcaagcaaacagtcatt
tctagacaggtctcgtgctggttggtacagacttccacttgtcatgtcgt
ggacttgtcgggttttatgtctgagaccgtcaggcctctgaggcctggcc
tgagaagtgtggattcgggacccgcgctcctgcctttccgactcggaggc
tgggaccgagtttcccgccccactgcccgaccagaggttggtgacagttg
aagtaagctgggaccggtcccagcaggttggaaccggtctgggccgagcc
ggaggaagggggggggg
gaattcactctgtaggccaggctggcctcgaactcagaaatccgactgcc
tctgcctcccaagtgctgggattaaaggcgtgcaccaccacgcctggcta
cagccagtgttttttcccaccccttaggttaaagtgacctgtgacagctt
gtggagagggtgtggctggaacagttttgacctctgtctcaaagcctcca
actatgtcttctttaactccttcagacttcctcagaaatatcacatctag
ggcttggtggaggtggctcctgggcctgaggtgaccctgaccttctcaaa
taggacctggctgttcaaaaggatgaagggaacacactgtagggattctg
ctgcaggccaagctgactccctcagtctgaggaagagatctggggagaca
aatgtccccatgtctaggttgtgtggggctgcggtcttcaggaaggaacg
gggtgaattcagggaacagtaagtgtgtacaggacctgagaaagtgtggc
tccttccttaccaggccacagaccacaccttcctccagaagtgccactat
caccatggtgaccaccccagctacgccaagcctcagctgcccctgccaat
cttcacggtgcggcactacgctgggactgtcacctaccaggtatctgccc
tcagacaaagaatgcaggtgaatcatcaaggccgtgtcatcgtagtgtct
gcccctcccaagctgagtcacctaccagaagtggcaccgtatctccatga
gagcctcaggccacacccacttctgagtgttattttttaatagctcctta
gctaaagatggggccttgagagcccctcccatccatgctggatttttttt
ttttttacatttgttttagttaatgaggtgggggaaaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115891892_115892258
seq2: B6Ng01-341F04.b_55_421 (reverse)

seq1  CCCCCCCCCCTTCCTCCGGCTCGGCCCAGACCGGTTCCAACCTGCTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCTTCCTCCGGCTCGGCCCAGACCGGTTCCAACCTGCTGGGA  50

seq1  CCGGTCCCAGCTTACTTCAACTGTCACCAACCTCTGGTCGGGCAGTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCCCAGCTTACTTCAACTGTCACCAACCTCTGGTCGGGCAGTGGGG  100

seq1  CGGGAAACTCGGTCCCAGCCTCCGAGTCGGAAAGGCAGGAGCGCGGGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAACTCGGTCCCAGCCTCCGAGTCGGAAAGGCAGGAGCGCGGGTCC  150

seq1  CGAATCCACACTTCTCAGGCCAGGCCTCAGAGGCCTGACGGTCTCAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATCCACACTTCTCAGGCCAGGCCTCAGAGGCCTGACGGTCTCAGACA  200

seq1  TAAAACCCGACAAGTCCACGACATGACAAGTGGAAGTCTGTACCAACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCCGACAAGTCCACGACATGACAAGTGGAAGTCTGTACCAACCAG  250

seq1  CACGAGACCTGTCTAGAAATGACTGTTTGCTTGAAGTCTCGGGAGGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGACCTGTCTAGAAATGACTGTTTGCTTGAAGTCTCGGGAGGAGAC  300

seq1  TCTGTGCACCGGAGGCCTTTTGTATCTTTAAGGCCTGTTAGATTGTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCACCGGAGGCCTTTTGTATCTTTAAGGCCTGTTAGATTGTCCAC  350

seq1  GAGGATCACCCATGCTT  367
      |||||||||||||||||
seq2  GAGGATCACCCATGCTT  367

seq1: chr11_115730275_115731164
seq2: B6Ng01-341F04.g_64_953

seq1  GAATTCACTCTGTAGGCCAGGCTGGCCTCGAACTCAGAAATCCGACTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGGCCAGGCTGGCCTCGAACTCAGAAATCCGACTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACGCCTGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACGCCTGGCTA  100

seq1  CAGCCAGTGTTTTTTCCCACCCCTTAGGTTAAAGTGACCTGTGACAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTGTTTTTTCCCACCCCTTAGGTTAAAGTGACCTGTGACAGCTT  150

seq1  GTGGAGAGGGTGTGGCTGGAACAGTTTTGACCTCTGTCTCAAAGCCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAGGGTGTGGCTGGAACAGTTTTGACCTCTGTCTCAAAGCCTCCA  200

seq1  ACTATGTCTTCTTTAACTCCTTCAGACTTCCTCAGAAATATCACATCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTCTTCTTTAACTCCTTCAGACTTCCTCAGAAATATCACATCTAG  250

seq1  GGCTTGGTGGAGGTGGCTCCTGGGCCTGAGGTGACCCTGACCTTCTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGTGGAGGTGGCTCCTGGGCCTGAGGTGACCCTGACCTTCTCAAA  300

seq1  TAGGACCTGGCTGTTCAAAAGGATGAAGGGAACACACTGTAGGGATTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCTGGCTGTTCAAAAGGATGAAGGGAACACACTGTAGGGATTCTG  350

seq1  CTGCAGGCCAAGCTGACTCCCTCAGTCTGAGGAAGAGATCTGGGGAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCCAAGCTGACTCCCTCAGTCTGAGGAAGAGATCTGGGGAGACA  400

seq1  AATGTCCCCATGTCTAGGTTGTGTGGGGCTGCGGTCTTCAGGAAGGAACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCCCATGTCTAGGTTGTGTGGGGCTGCGGTCTTCAGGAAGGAACG  450

seq1  GGGTGAATTCAGGGAACAGTAAGTGTGTACAGGACCTGAGAAAGTGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAATTCAGGGAACAGTAAGTGTGTACAGGACCTGAGAAAGTGTGGC  500

seq1  TCCTTCCTTACCAGGCCACAGACCACACCTTCCTCCAGAAGTGCCACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTACCAGGCCACAGACCACACCTTCCTCCAGAAGTGCCACTAT  550

seq1  CACCATGGTGACCACCCCAGCTACGCCAAGCCTCAGCTGCCCCTGCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGTGACCACCCCAGCTACGCCAAGCCTCAGCTGCCCCTGCCAAT  600

seq1  CTTCACGGTGCGGCACTACGCTGGGACTGTCACCTACCAGGTATCTGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACGGTGCGGCACTACGCTGGGACTGTCACCTACCAGGTATCTGCCC  650

seq1  TCAGACAAAGAATGCAGGTGAATCATCAAGGCCGTGTCATCGTAGTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAAAGAATGCAGGTGAATCATCAAGGCCGTGTCATCGTAGTGTCT  700

seq1  GCCCCTCCCAAGCTGAGTCACCTACCAGAAGTGGCACCGTATCTCCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCCAAGCTGAGTCACCTACCAGAAGTGGCACCGTATCTCCATGA  750

seq1  GAGCCTCAGGCCACACCCACTTCTGAGTGTTATTTTTTAATAGCTCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCAGGCCACACCCACTTCTGAGTGTTATTTTTTAATAGCTCCTTA  800

seq1  GCTAAGGATGGGGCCTTGAGAGCCCCTCCCATCCATGCTGGA-TTTTTTT  849
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  GCTAAAGATGGGGCCTTGAGAGCCCCTCCCATCCATGCTGGATTTTTTTT  850

seq1  TTTTTTACATTTGTTTTTAGTTAATGAGGTGGGGGAAGGGT  890
      ||||||||||||| ||||||||||||||||||||||| |||
seq2  TTTTTTACATTTG-TTTTAGTTAATGAGGTGGGGGAAAGGT  890