BAC Information

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BAC

Clone NameB6Ng01-341L20
Chromosome11 (Build37)4 (Build37)
Map Location 70,985,873 - 70,987,07486,241,902 - 86,241,958
singlet/doubletsingletsinglet
Overlap geneNlrp1b
Upstream geneSlc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a
Downstream geneNlrp1c, LOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341L20.bB6Ng01-341L20.g
ACCGA125036GA125037
length1,180750
definitionB6Ng01-341L20.b B6Ng01-341L20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(70,985,873 - 70,987,074)(86,241,902 - 86,241,958)
sequence
gaattccaagctctccacagctgagctgcaagagtaatggatataggtca
ggaccaatgctcaactaccattggccatggcagagcttcataggcctagg
acctctcattgctaaatttcaagagtcacgtgacatgaaattcagcagac
ctggaatagggcaggatctcattcataaagtgagatcttattcaagatag
aaactgagtagaatcatgagggcagaccatatggggaaatgggaagatgc
cattcctcagacctggaactttctcccctcaggcctccctttgcctctgt
atttttcacttctgctttacctatgtcctcaggaagtgtgatccactgaa
gccctcatgagttcagtgttatcattagctaatgggatttcttgatgaat
gcaatctttcatgctccccaagaaaagaacatccatttgtttattttaac
cagtctggcatgttttataattgtggtaatgggagtttagtgaatatctg
acaaataccaagcctctgcctagatatcctttgccttaatgtcctcccat
ctacccatacttcaggggagaacccagcccagactcaccacaaagtcttt
agttggcagccagggtatatcatggcatcacagagatattgcactgcaga
gtaactcagtggatttccactgaggtccaacccctccagattactgttga
atttaagattgtagaaaagaatcttccaactggcattagtgattggggtc
cacctgtacctgaggggccagagaggtagcagaggcatgtgacttgcatg
gtatgatctgtgcagagccccacatagcagatgggcttctatctacctga
gtcccaggcacagggatgccatccccagaattcactagcctcctacatgt
tcttttgctccaaattctggattctcctcctcttggtagtttctcatcta
tgtctttaggatagcatgacatgtgctcattttgtgcatctgtttatgtc
tcagtctagtgtccagggtggtaacaaatgctacatcttcttgtaatcta
cagtgctcagctaatgcttgtaaagtggaactgaaattcagatggctcct
ctctgaatggatgcagcatgcttcttgacggaatactcgagtcatgatgg
tacgacctaaaagttaggcacgaagagagc
gaattctagaaagtctttaatttatttatttcttccttgacccagtggtc
actaagtagatattgagcattcaatttccatgagtgttgaagctttctgt
tgtttctttaatctacatttggcagatacaattcagagggtcattttaat
tttcttttatctgttgagacttgcaactttgtgatcaagtacatggtcaa
tttaggagaaggttcagtgaggtgctgaatgttctggagaattttttaca
atcttttaggattatttgagttagaacatatctcattgtttctctgttta
gtatctgtttggataacttgtctactggtgttgaagtcttccactactaa
tgtgtggagtttaatatgtgatttagactttagtaatgtttcctttatga
atgtgtgtgcccttggctttaagggatagatatttaaaactgagatgtca
ccttggtggatgttctcttggatgagtatgaagtgtccttgtcattttta
ttttattaattttggttgcaagtctattttattagatactagaatggcga
ctacaacttccttcttgtgtccatttgcttagaaatcttgttccagccct
taaatctaagataatgatctttaagtgtgtctcttgcataaagcatagtg
atggatcctattttcatatccattatgctagtttatatctttttttattt
aattgtgatttttttttttgctttttttcatatttttttatttaggtatt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70985873_70987074
seq2: B6Ng01-341L20.b_46_1225

seq1  GAATTCCAAGCTCTCCACAGCTGAGCTGCAAGAGTAATGGATATAGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTCTCCACAGCTGAGCTGCAAGAGTAATGGATATAGGTCA  50

seq1  GGACCAATGCTCAACTACCATTGGCCATGGCAGAGCTTCATAGGCCTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAATGCTCAACTACCATTGGCCATGGCAGAGCTTCATAGGCCTAGG  100

seq1  ACCTCTCATTGCTAAATTTCAAGAGTCACGTGACATGAAATTCAGCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCATTGCTAAATTTCAAGAGTCACGTGACATGAAATTCAGCAGAC  150

seq1  CTGGAATAGGGCAGGATCTCATTCATAAAGTGAGATCTTATTCAAGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATAGGGCAGGATCTCATTCATAAAGTGAGATCTTATTCAAGATAG  200

seq1  AAACTGAGTAGAATCATGAGGGCAGACCATATGGGGAAATGGGAAGATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGTAGAATCATGAGGGCAGACCATATGGGGAAATGGGAAGATGC  250

seq1  CATTCCTCAGACCTGGAACTTTCTCCCCTCAGGCCTCCCTTTGCCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTCAGACCTGGAACTTTCTCCCCTCAGGCCTCCCTTTGCCTCTGT  300

seq1  ATTTTTCACTTCTGCTTTACCTATGTCCTCAGGAAGTGTGATCCACTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCACTTCTGCTTTACCTATGTCCTCAGGAAGTGTGATCCACTGAA  350

seq1  GCCCTCATGAGTTCAGTGTTATCATTAGCTAATGGGATTTCTTGATGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCATGAGTTCAGTGTTATCATTAGCTAATGGGATTTCTTGATGAAT  400

seq1  GCAATCTTTCATGCTCCCCAAGAAAAGAACATCCATTTGTTTATTTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTTTCATGCTCCCCAAGAAAAGAACATCCATTTGTTTATTTTAAC  450

seq1  CAGTCTGGCATGTTTTATAATTGTGGTAATGGGAGTTTAGTGAATATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGGCATGTTTTATAATTGTGGTAATGGGAGTTTAGTGAATATCTG  500

seq1  ACAAATACCAAGCCTCTGCCTAGATATCCTTTGCCTTAATGTCCTCCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACCAAGCCTCTGCCTAGATATCCTTTGCCTTAATGTCCTCCCAT  550

seq1  CTACCCATACTTCAGGGGAGAACCCAGCCCAGACTCACCACAAAGTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCATACTTCAGGGGAGAACCCAGCCCAGACTCACCACAAAGTCTTT  600

seq1  AGTTGGCAGCCAGGGTATATCATGGCATCACAGAGATATTGCACTGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCAGCCAGGGTATATCATGGCATCACAGAGATATTGCACTGCAGA  650

seq1  GTAACTCAGTGGATTTCCACTGAGGTCCAACCCCTCCAGATTACTGTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCAGTGGATTTCCACTGAGGTCCAACCCCTCCAGATTACTGTTGA  700

seq1  ATTTAAGATTGTAGAAAAGAATCTTCCAACTGGCATTAGTGATTGGGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGATTGTAGAAAAGAATCTTCCAACTGGCATTAGTGATTGGGGTC  750

seq1  CACCTGTACCTGAGGGGCCAGAGAGGTAGCAGAGGCATGTGACTTGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTACCTGAGGGGCCAGAGAGGTAGCAGAGGCATGTGACTTGCATG  800

seq1  GTATGATCTGTGCAGAGCCCCACATAGCAGATGGGCTTCTATCTACCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATCTGTGCAGAGCCCCACATAGCAGATGGGCTTCTATCTACCTGA  850

seq1  GTCCCAGGCACAGGGATGCCATCCCCAGAATTCACTAGCCTCCTACATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGGCACAGGGATGCCATCCCCAGAATTCACTAGCCTCCTACATGT  900

seq1  TCTTTTGCTCCAAATTCTGGATTCT-CTCCTCTTGGTAGTTTCTCATCTA  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTTTTGCTCCAAATTCTGGATTCTCCTCCTCTTGGTAGTTTCTCATCTA  950

seq1  TGTCTTTTAGGATAGCATGACATGTGCTCATTTTGTGCATCTGTTTATGT  999
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTC-TTTAGGATAGCATGACATGTGCTCATTTTGTGCATCTGTTTATGT  999

seq1  CTCAGTCTAGTTGTCCCAAGGGTGGGAACAAATGGCTTACATCTTTCCTT  1049
      |||||||||| |||||  ||||||| ||||||||   ||||||||    |
seq2  CTCAGTCTAG-TGTCC--AGGGTGGTAACAAATG--CTACATCTT---CT  1041

seq1  TGTAATCTACAGTGCTCAGCTAATTGCCTTGTTAAAGTGGGACATGAAAA  1099
      ||||||||||||||||||||||||   |||| |||||||| || || |||
seq2  TGTAATCTACAGTGCTCAGCTAAT--GCTTG-TAAAGTGGAAC-TG-AAA  1086

seq1  TTCAGATTGGCTTCTTCTCTTTGATGTGAATGCAGC-TGCTTTCTTTTGG  1148
      ||||||| |    || |||| |||  || ||||||| ||| |||||    
seq2  TTCAGATGG----CTCCTCTCTGA-ATGGATGCAGCATGC-TTCTT----  1126

seq1  AACAGATTACTCGAGTCTCATGATGG-AC-AGCTCAAAAAAGTT---TAG  1193
       || || ||||||||  ||||||||| || | ||   |||||||    | 
seq2  GACGGAATACTCGAG--TCATGATGGTACGACCT---AAAAGTTAGGCAC  1171

seq1  GAAGAGAGC  1202
      |||||||||
seq2  GAAGAGAGC  1180

seq1: chr4_86241902_86241958
seq2: B6Ng01-341L20.g_769_818 (reverse)

seq1  AATAGCCTAAATATAAAGAGCAGATTTGAAAACAAAGCAAAAAAAAAAAT  50
      |||| |||||||| ||     | || |||||| |||||||||||||||||
seq2  AATA-CCTAAATAAAA-----AAATATGAAAA-AAAGCAAAAAAAAAAAT  43

seq1  CACAATT  57
      |||||||
seq2  CACAATT  50