BAC Information

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BAC

Clone NameB6Ng01-341M13
Chromosome5 (Build37)11 (Build37)
Map Location 71,813,300 - 71,814,34965,657,381 - 65,658,067
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGabrg1, Gabra2, LOC635092
Downstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8, Atp10d, Corin
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341M13.bB6Ng01-341M13.g
ACCGA125066GA125067
length1,041688
definitionB6Ng01-341M13.b B6Ng01-341M13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,813,300 - 71,814,349)(65,657,381 - 65,658,067)
sequence
gaattcagcttaatttgtcagccttggatacagttccttttacccattga
gcccactctccaagaccctggaattttctggttgtcatatgatgtagact
catgtaatgttttgctgaagcatatttatgagatgtctggatgaggcaac
acctgtgagatgacacatgatgtttggaaagagtataagtgggactcaag
ggacagtgacaagatgcttgcagtattgtttgcatattacctactaaagg
acatcttgcttctttccatgtttcagaatttatgaatggagcttttgcaa
acatttgtgtgtaggttgtgtgtggacataaatgctaagctctcttaaat
aactctcaaagagtgtaagtcctggactgtaaagcaagaatatgtatagt
ttcataagaaaccacaaaactttccgaaatcactgaacagctactggtgc
atctgcaccagcacaaatcaagaactttttctttttagcattttcagttt
ttttctctttgtgatagtgttttagtaagcagtccaagctgtctttaaac
tccatatcccctgcctcagctgcccaactgctgtgatttcaggtaccttt
tacaaagtgaatgattgtactgagtggttttatatgtcaacttgataaaa
gctggagttatcacagagaacggagacatcccttgaggaaatgcttccat
gagatccaaatgtaaggcattttctcaattagagatcaagtgtgggaggg
cccattgtggatagtgccatctcttggctggtagtcttgggttctgtaag
aaagcatactgtgcaagctagggaaagcaagccagtacacagcactcctc
catggcttctgcatcagttcctgcctccaagttcctgctctgtgtgagtt
tctgtcctgagttcctttggtgatgatagcaatgtggaagtgtaaatgaa
taaaccttttcctcccacttgctctttggtcatatgttttgtgcattatc
catgtcatgtgcattgtcagaaaccctgactagacatgatt
gaattcaattcccagtactgaggagaaatgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtatacatgttatg
catagacagagggagagaaactgataagcatggtggtgtttggatgggtg
ataaatgcataaataataactggtaagtgaatgtggctggctgatgacta
agaagaggaactgtttggtacattgaagaaaatatgcaaacattggcagc
tttatagtattttctcttatgggtagaaaggattctagaagtcttttttc
cctgatatttctggtaaatatatattactttcttaaaaagaaggaaaagc
agaggtattgcttatggaaatgaaattgaattcatcccttggaaggcatc
ccttctctctgaaggactcctggtgctccctgagcaaagaagagtcctcc
tccatctccgcccagcttctcctcacccacagctccttcccaggcctcca
cacttgacaagagacaggatagaactcaatgtccccatccttgtgtattt
ttggagcaatgttctccagaccatctcttcatctcattgtgagtcacagc
caaatggctgttcactgatacaggactgtttcttcaattccactccagag
acaaaatataatataaatttagccatttgtctccagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_71813300_71814349
seq2: B6Ng01-341M13.b_50_1090

seq1  GAATTCAGCTTAATTTGTCAGCCTTGGATACAGTTCCTTTTACCCATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTAATTTGTCAGCCTTGGATACAGTTCCTTTTACCCATTGA  50

seq1  GCCCACTCTCCAAGACCCTGGAATTTTCTGGTTGTCATATGATGTAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTCTCCAAGACCCTGGAATTTTCTGGTTGTCATATGATGTAGACT  100

seq1  CATGTAATGTTTTGCTGAAGCATATTTATGAGATGTCTGGATGAGGCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAATGTTTTGCTGAAGCATATTTATGAGATGTCTGGATGAGGCAAC  150

seq1  ACCTGTGAGATGACACATGATGTTTGGAAAGAGTATAAGTGGGACTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAGATGACACATGATGTTTGGAAAGAGTATAAGTGGGACTCAAG  200

seq1  GGACAGTGACAAGATGCTTGCAGTATTGTTTGCATATTACCTACTAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTGACAAGATGCTTGCAGTATTGTTTGCATATTACCTACTAAAGG  250

seq1  ACATCTTGCTTCTTTCCATGTTTCAGAATTTATGAATGGAGCTTTTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTGCTTCTTTCCATGTTTCAGAATTTATGAATGGAGCTTTTGCAA  300

seq1  ACATTTGTGTGTAGGTTGTGTGTGGACATAAATGCTAAGCTCTCTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTGTGTAGGTTGTGTGTGGACATAAATGCTAAGCTCTCTTAAAT  350

seq1  AACTCTCAAAGAGTGTAAGTCCTGGACTGTAAAGCAAGAATATGTATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCAAAGAGTGTAAGTCCTGGACTGTAAAGCAAGAATATGTATAGT  400

seq1  TTCATAAGAAACCACAAAACTTTCCGAAATCACTGAACAGCTACTGGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGAAACCACAAAACTTTCCGAAATCACTGAACAGCTACTGGTGC  450

seq1  ATCTGCACCAGCACAAATCAAGAACTTTTTCTTTTTAGCATTTTCAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCACCAGCACAAATCAAGAACTTTTTCTTTTTAGCATTTTCAGTTT  500

seq1  TTTTCTCTTTGTGATAGTGTTTTAGTAAGCAGTCCAAGCTGTCTTTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTTGTGATAGTGTTTTAGTAAGCAGTCCAAGCTGTCTTTAAAC  550

seq1  TCCATATCCCCTGCCTCAGCTGCCCAACTGCTGTGATTTCAGGTACCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATCCCCTGCCTCAGCTGCCCAACTGCTGTGATTTCAGGTACCTTT  600

seq1  TACAAAGTGAATGATTGTACTGAGTGGTTTTATATGTCAACTTGATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTGAATGATTGTACTGAGTGGTTTTATATGTCAACTTGATAAAA  650

seq1  GCTGGAGTTATCACAGAGAACGGAGACATCCCTTGAGGAAATGCTTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTTATCACAGAGAACGGAGACATCCCTTGAGGAAATGCTTCCAT  700

seq1  GAGATCCAAATGTAAGGCATTTTCTCAATTAGAGATCAAGTGTGGGAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCAAATGTAAGGCATTTTCTCAATTAGAGATCAAGTGTGGGAGGG  750

seq1  CCCATTGTGGATAGTGCCATCTCTTGGCTGGTAGTCTTGGGTTCTGTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGTGGATAGTGCCATCTCTTGGCTGGTAGTCTTGGGTTCTGTAAG  800

seq1  AAAGCAAACTGTGCAAGCTAGGGAAAGCAAGCCAGTACACAGCACTCCTC  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATACTGTGCAAGCTAGGGAAAGCAAGCCAGTACACAGCACTCCTC  850

seq1  CATGGCTTCTGCATCAGTTCCTGCCTCCAAGTTCCTGCTCTGTGTGAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTTCTGCATCAGTTCCTGCCTCCAAGTTCCTGCTCTGTGTGAGTT  900

seq1  TCTGTCCTGAGTTCCTTTGGTGATGAATAGCAATGTGGAAGTGTAAAATG  950
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  TCTGTCCTGAGTTCCTTTGGTGATG-ATAGCAATGTGGAAGTGT-AAATG  948

seq1  AATAAACCTTTTCCTCCCCAACTTGCTCTTTGGTCATAATGTTTTGTGCA  1000
      ||||||||||||||||||  ||||||||||||||||| ||||||||||||
seq2  AATAAACCTTTTCCTCCC--ACTTGCTCTTTGGTCAT-ATGTTTTGTGCA  995

seq1  TTATCCATTGTCATTGTGCATTGTCAGAAACCCTGACTAAGACAATGATT  1050
      ||||||| ||||| |||||||||||||||||||||||| |||| ||||||
seq2  TTATCCA-TGTCA-TGTGCATTGTCAGAAACCCTGACT-AGAC-ATGATT  1041

seq1: chr11_65657381_65658067
seq2: B6Ng01-341M13.g_65_752 (reverse)

seq1  AGCTGGAGACAAATGGCTAAATTTATATTATATTTTTGTCTCTGGAGTGG  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGCTGGAGACAAATGGCTAAATTTATATTATA-TTTTGTCTCTGGAGTGG  49

seq1  AATTGAAGAAACAGTCCTGTATCAGTGAACAGCCATTTGGCTGTGACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGAAACAGTCCTGTATCAGTGAACAGCCATTTGGCTGTGACTCA  99

seq1  CAATGAGATGAAGAGATGGTCTGGAG-ACATTGCTCC-AAAATACACAAG  148
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  CAATGAGATGAAGAGATGGTCTGGAGAACATTGCTCCAAAAATACACAAG  149

seq1  GATGGGGACATTGAGTTCTATCCTGTCTCTTGTCAAGTGTGGAGGCCTGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGACATTGAGTTCTATCCTGTCTCTTGTCAAGTGTGGAGGCCTGG  199

seq1  GAAGGAGCTGTGGGTGAGGAGAAGCTGGGCGGAGATGGAGGAGGACTCTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCTGTGGGTGAGGAGAAGCTGGGCGGAGATGGAGGAGGACTCTT  249

seq1  CTTTGCTCAGGGAGCACCAGGAGTCCTTCAGAGAGAAGGGATGCCTTCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCAGGGAGCACCAGGAGTCCTTCAGAGAGAAGGGATGCCTTCCA  299

seq1  AGGGATGAATTCAATTTCATTTCCATAAGCAATACCTCTGCTTTTCCTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGAATTCAATTTCATTTCCATAAGCAATACCTCTGCTTTTCCTTC  349

seq1  TTTTTGAGAAAGTAATATATATTTACCAGAAATATCAGGGAAAAAAGACT  398
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGAAAGTAATATATATTTACCAGAAATATCAGGGAAAAAAGACT  399

seq1  TCTAGAATCCTTTCTACCCATAAGAGAAAATACTATAAAGCTGCCAATGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATCCTTTCTACCCATAAGAGAAAATACTATAAAGCTGCCAATGT  449

seq1  TTGCATATTTTCTTCAATGTACCAAACAGTTCCTCTTCTTAGTCATCAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATTTTCTTCAATGTACCAAACAGTTCCTCTTCTTAGTCATCAGC  499

seq1  CAGCCACATTCACTTACCAGTTATTATTTATGCATTTATCACCCATCCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACATTCACTTACCAGTTATTATTTATGCATTTATCACCCATCCAA  549

seq1  ACACCACCATGCTTATCAGTTTCTCTCCCTCTGTCTATGCATAACATGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACCATGCTTATCAGTTTCTCTCCCTCTGTCTATGCATAACATGTA  599

seq1  TACAACACACACACACACACACACACACACACACACACACACACACACAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACACACACACACACACACACACACACACACACACACACACACACAC  649

seq1  ACACACACACATTTCTCCTCAGTACTGGGAATTGAATTC  687
      |||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACATTTCTCCTCAGTACTGGGAATTGAATTC  688