BAC Information

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BAC

Clone NameB6Ng01-343B24
Chromosome11 (Build37)
Map Location 3,864,271 - 4,005,918
singlet/doubletdoublet
Overlap genePes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720
Downstream geneLOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343B24.bB6Ng01-343B24.g
ACCGA125988GA125989
length547957
definitionB6Ng01-343B24.b B6Ng01-343B24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,864,271 - 3,864,822)(4,004,964 - 4,005,918)
sequence
attatcaagacttgggactttcttaattgagccaggcccggtcctaggta
ctgggaattgagaagtaagcagtcagatgcggccccgctttcccagtgtc
aacttcagataaagtggctaagggtttttaagtgcgctcctgagaaaggg
agggagggaggagcagtagagtggagagtatcaacaggcgcttaatccga
ttagtgttgtcttgtaggtcctcttctgacgtagcattttagtggaaatc
agtacttaaagaacactttagtctggggcatgaaaatgttgggaagtgtg
gatggtccccaaccttcccctaagagaattctcggcactcagagaaagga
gagactaatatcagcgtgcagctgtagcttccagccgtctcttagccgtc
tctgtgtttgatggtttatatggggttaggcgttgtcacaatcttatatt
ttaggatgacccttttgttcctttacaggcttctggttatgatagtttta
tctttagcagatggaacttgctatccgtgtgatattggtggtgctca
gaattcaaggccagccttggttactgagaccctgttacaaagagaggggc
ttaggcgccagagtgccagtgttggctgtggaggtatttcctagagatgg
gaaagcctctgccttaacccagctctcccgctcagccgggagaagataga
aagtcagagcaatcagtttttatggtttctggttttactgctgctaccac
ccaccaagtgctgaggtggtttggttccctggcagcagagctatgtagga
ggttcagtctgttctcctacccacacttaaaattctttcaaccaaatgtg
ccttaggcacattgggaagaaccgagatccccaacagaggagagataaaa
gttacttccgggtggtcactggagtttagcagtgtcaatgaaatcacccc
aaggccacagatacccgagggtgggcagacacaggacagtcagagttaca
gtcatctgtgcagaggacgtgaggctagtccccggcctggagctgctgac
tgatagtcagctgatagtctatataattagagtggtttgtggtattaagg
tattgtgccaggctagtctttcttaggaaaatagttctcagcattgctgc
tccattcaggagaggatttggttcgaaaaacaacaaaaagcagccaatct
gctcaaaacaagaacacaagtgacgtgggcagagtacagacaagtaagcc
catttaagaggtcactctccagtgaggtactcactcagtaaatcatgact
cagcccagtgaagtgtgggagaagaggggagatcagcatcactgggtgag
aacccgtggattcaagacttctggtccggccgtgtgctcctctgcatgga
atacagttcccacctttgtccatttgggcttttaatttgatgtttgtatc
cttttgggagaggtatataactaatttactaagctcttcttagaattatc
ctcaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3864271_3864822
seq2: B6Ng01-343B24.b_44_596

seq1  GAATTCATTATCAAGACTTGGGACTTTCTTAATTGAGCCAGGCCCGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATCAAGACTTGGGACTTTCTTAATTGAGCCAGGCCCGGTCC  50

seq1  TAGGTACTGGGAATTGAGAAGTAAGCAGTCAGATGCGGCCCCGCTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACTGGGAATTGAGAAGTAAGCAGTCAGATGCGGCCCCGCTTTCCC  100

seq1  AGTGTCAACTTCAGATAAAGTGGCTAAGGGTTTTTAAGTGCGCTCCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAACTTCAGATAAAGTGGCTAAGGGTTTTTAAGTGCGCTCCTGAG  150

seq1  AAAGGGAGGGAGGGAGGAGCAGTAGAGTGGAGAGTATCAACAGGCGCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGGGAGGGAGGAGCAGTAGAGTGGAGAGTATCAACAGGCGCTTA  200

seq1  ATCCGATTAGTGTTGTCTTGTAGGTCCTCTTCTGACGTAGCATTTTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGATTAGTGTTGTCTTGTAGGTCCTCTTCTGACGTAGCATTTTAGTG  250

seq1  GAAATCAGTACTTAAAGAACACTTTAGTCTGGGGCATGAAAATGTTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGTACTTAAAGAACACTTTAGTCTGGGGCATGAAAATGTTGGGA  300

seq1  AGTGTGGATGGTCCCCAACCTTCCCCTAAGAGAATTCTCGGCACTCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGATGGTCCCCAACCTTCCCCTAAGAGAATTCTCGGCACTCAGAG  350

seq1  AAAGGAGAGACTAATATCAGCGTGCAGCTGTAGCTTCCAGCCGTCTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAGACTAATATCAGCGTGCAGCTGTAGCTTCCAGCCGTCTCTTA  400

seq1  GCCGTCTCTGTGTTTGATGGTTTATATGGGGTTAGGCGTTGTCACAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCTCTGTGTTTGATGGTTTATATGGGGTTAGGCGTTGTCACAATCT  450

seq1  TATATTTTAGGATGACCCTTTTGTTCCTTTACAGGC-TCTGGTTATGATA  499
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATATTTTAGGATGACCCTTTTGTTCCTTTACAGGCTTCTGGTTATGATA  500

seq1  GTTTTATCTTTAGCAGATGGAACTTGCTATCCGTGTGATATTGGTGGTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATCTTTAGCAGATGGAACTTGCTATCCGTGTGATATTGGTGGTGC  550

seq1  TCA  552
      |||
seq2  TCA  553

seq1: chr11_4004964_4005918
seq2: B6Ng01-343B24.g_67_1023 (reverse)

seq1  AATTGAGGATA--TCTAAG-AGGGCTTTGTAAATTAGTATAT-TACCTCT  46
      |||||||||||  |||||| || |||| |||||||||| ||| |||||||
seq2  AATTGAGGATAATTCTAAGAAGAGCTTAGTAAATTAGT-TATATACCTCT  49

seq1  CCCAAAAAAGGATACAAACATCAAAATAAAAG-CCAAATGGACAAAGGTG  95
      |||  |||||||||||||||||||| |||||| |||||||||||||||||
seq2  CCC--AAAAGGATACAAACATCAAATTAAAAGCCCAAATGGACAAAGGTG  97

seq1  GGAACTGTATTCCATGCAGAGGAGCACACGGCCGGACCAGAAGTCTTGAA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGTATTCCATGCAGAGGAGCACACGGCCGGACCAGAAGTCTTGAA  147

seq1  TCCACGGGTTCTCACCCAGTGATGCTGATCTCCCCTCTTCTCCCACACTT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGGGTTCTCACCCAGTGATGCTGATCTCCCCTCTTCTCCCACACTT  197

seq1  CACTGGGCTGAGTCATGATTTACTGAGTGAGTACCTCACTGGAGAGTGAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGCTGAGTCATGATTTACTGAGTGAGTACCTCACTGGAGAGTGAC  247

seq1  CTCTTAAATGGGCTTACTTGTCTGTACTCTGCCCACGTCACTTGTGTTCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAATGGGCTTACTTGTCTGTACTCTGCCCACGTCACTTGTGTTCT  297

seq1  TGTTTTGAGCAGATTGGCTGCTTTTTGTTGTTTTTCGAACCAAATCCTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAGCAGATTGGCTGCTTTTTGTTGTTTTTCGAACCAAATCCTCT  347

seq1  CCTGAATGGAGCAGCAATGCTGAGAACTATTTTCCTAAGAAAGACTAGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATGGAGCAGCAATGCTGAGAACTATTTTCCTAAGAAAGACTAGCC  397

seq1  TGGCACAATACCTTAATACCACAAACCACTCTAATTATATAGACTATCAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAATACCTTAATACCACAAACCACTCTAATTATATAGACTATCAG  447

seq1  CTGACTATCAGTCAGCAGCTCCAGGCCGGGGACTAGCCTCACGTCCTCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTATCAGTCAGCAGCTCCAGGCCGGGGACTAGCCTCACGTCCTCTG  497

seq1  CACAGATGACTGTAACTCTGACTGTCCTGTGTCTGCCCACCCTCGGGTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGACTGTAACTCTGACTGTCCTGTGTCTGCCCACCCTCGGGTAT  547

seq1  CTGTGGCCTTGGGGTGATTTCATTGACACTGCTAAACTCCAGTGACCACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCCTTGGGGTGATTTCATTGACACTGCTAAACTCCAGTGACCACC  597

seq1  CGGAAGTAACTTTTATCTCTCCTCTGTTGGGGATCTCGGTTCTTCCCAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGTAACTTTTATCTCTCCTCTGTTGGGGATCTCGGTTCTTCCCAAT  647

seq1  GTGCCTAAGGCACATTTGGTTGAAAGAATTTTAAGTGTGGGTAGGAGAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTAAGGCACATTTGGTTGAAAGAATTTTAAGTGTGGGTAGGAGAAC  697

seq1  AGACTGAACCTCCTACATAGCTCTGCTGCCAGGGAACCAAACCACCTCAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAACCTCCTACATAGCTCTGCTGCCAGGGAACCAAACCACCTCAG  747

seq1  CACTTGGTGGGTGGTAGCAGCAGTAAAACCAGAAACCATAAAAACTGATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGTGGGTGGTAGCAGCAGTAAAACCAGAAACCATAAAAACTGATT  797

seq1  GCTCTGACTTTCTATCTTCTCCCGGCTGAGCGGGAGAGCTGGGTTAAGGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGACTTTCTATCTTCTCCCGGCTGAGCGGGAGAGCTGGGTTAAGGC  847

seq1  AGAGGCTTTCCCATCTCTAGGAAATACCTCCACAGCCAACACTGGCACTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTTCCCATCTCTAGGAAATACCTCCACAGCCAACACTGGCACTC  897

seq1  TGGCGCCTAAGCCCCTCTCTTTGTAACAGGGTCTCAGTAACCAAGGCTGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCCTAAGCCCCTCTCTTTGTAACAGGGTCTCAGTAACCAAGGCTGG  947

seq1  CCTTGAATTC  955
      ||||||||||
seq2  CCTTGAATTC  957