BAC Information

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BAC

Clone NameB6Ng01-343D13
Chromosome11 (Build37)
Map Location 59,812,805 - 59,920,016
singlet/doubletdoublet
Overlap genePemt, Rai1
Upstream geneObscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1
Downstream geneSrebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343D13.bB6Ng01-343D13.g
ACCGA126056GA126057
length4031,088
definitionB6Ng01-343D13.b B6Ng01-343D13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,919,608 - 59,920,016)(59,812,805 - 59,813,886)
sequence
tcaacacagcactgccgttggaaaagggggtgggagggggcgcggggccc
cgctcgaaccgcgacacaagcgctgcgggattgcgtgcggtggggctggg
acgcgccggcctgggctcgccgtgcaggcacgcagcctcacgtccccagt
ccttcggagcgtaagacgctcgggtttaatccattcatagtcctcaggtc
ctgggttcccgggacgcaggcacaactcctggctgcactcccgccctgct
gtgtgaatgagcaaccgggagccccaagaagacctagctagctggtagct
gggaaaaactggcgtcccaggaaactggggccgacgctacctgaaacctg
ctttgtttttttctattcctatgcttgacctttaatgtctccatttgtga
cca
gaattctctgccaaatatgaaaacgtatacaggaagggacaaaggcacgg
gaggctcagtaaattgccagaagccatccagcggggtaatgggaaagggc
agcctcatcccacacctctgcatcctatggcttcctcctcctcctcctgc
aactagctctgctagactagctgaagagatcacagggtgtccccatggct
ggacgcctgctgggctaggtattttcccatctcacaattacctgagatga
ctggctgcagagagagggcttgttttgcgtcatagtttccatccatgacc
tgttgtttcaggtctatggcacatcctggcaggtatggaaagcagaatga
agccccacttaaagacctgatttttctcttgctgggccataccttttaaa
ggtcccactacatccaatagtgacacaggctggggatgaggtggggagga
ggtaccttcaacacctttggataacttgtttaaagccagactgctttgta
acctgtagcctggtaggcatgaaaacacttgtgtcttcagttttttggtt
tttttgttttttatttttgttttgttttgttttttcgagacagggtttcc
ctggctgtcctggaaatcactctgtagaccaggctggcctcgaactcaga
aatccacctgcctctgcatcccgagtgctgggattaaaggcgtgcgccac
taccacctggcgacttgtgtcttcatttagcatttaatacctcaacatga
cctggatgagagacaaatgcctgtgggttcacctgcctgtgggattttgc
tactcgggtttgctgtgcttcaaaaagagggtacaagggctcagtggtta
agagtacagactgcttcttccagaggtcctgagttcaaatcccagtaaaa
cacatggtggctcacaaccatctgtaatggaaccgatgccctcttctagt
gttgcatctgaagacaagctgcagtgtgttctaataattaaaacgttaat
taatcctctgaaaaataaaaagaggggacataggagaggacactgggttt
gggaagtcatgcatagtctcatctagctataagtccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_59919608_59920016
seq2: B6Ng01-343D13.b_50_458 (reverse)

seq1  TGGTCACAACTGGAGGCCTTCAAGGAGGAGCAGAGGGGAAGCGAAACACA  50
      ||||||||| ||||| | || ||||   |||| |||   ||  ||| |||
seq2  TGGTCACAAATGGAGACATTAAAGGTCAAGCATAGGAATAGAAAAAAACA  50

seq1  AGGCAGGCTCCAGGTCGCGGCGGCCCCAGTTTCCCGGGGCGCCCGTTTTT  100
      | ||||| | ||||| ||| |||||||||||||| ||| |||| ||||||
seq2  AAGCAGGTTTCAGGTAGCGTCGGCCCCAGTTTCCTGGGACGCCAGTTTTT  100

seq1  CCCAGCGACCAGCTAGCTAGCTCCTCTTGGGGCTCCCGGTCGCTCATTCA  150
      |||||| ||||||||||||| || |||||||||||||||| |||||||||
seq2  CCCAGCTACCAGCTAGCTAGGTCTTCTTGGGGCTCCCGGTTGCTCATTCA  150

seq1  CACAGCAGGGCGGGAGTGCAGCCAGGAGCTGTGCCTGCGTCCCGGGAACC  200
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACAGCAGGGCGGGAGTGCAGCCAGGAGTTGTGCCTGCGTCCCGGGAACC  200

seq1  CAGGACCTGAGGACTCTGAATGGATTAAACCCGAGCGTCTTACGCTCCGA  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGGACCTGAGGACTATGAATGGATTAAACCCGAGCGTCTTACGCTCCGA  250

seq1  AGGACTGGGGACGTGAGGCTGCGTGCCTGCACGGCGAGCCCAGGCCGGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGGGGACGTGAGGCTGCGTGCCTGCACGGCGAGCCCAGGCCGGCG  300

seq1  CGTCCCAGCCCCACCGCACGCACTCCCGCAGCGCTTGTGTCGCGGTTCGA  350
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CGTCCCAGCCCCACCGCACGCAATCCCGCAGCGCTTGTGTCGCGGTTCGA  350

seq1  GCGGGGCCCCGCGCCCCCTCCCACCCCCTTTTCCAACGGCAGTGCTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGCCCCGCGCCCCCTCCCACCCCCTTTTCCAACGGCAGTGCTGTGT  400

seq1  TGAGAATTC  409
      |||||||||
seq2  TGAGAATTC  409

seq1: chr11_59812805_59813886
seq2: B6Ng01-343D13.g_68_1155

seq1  GAATTCTCTGCCAAATATGAAAACGTATACAGGAAGGGACAAAGGCACGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCAAATATGAAAACGTATACAGGAAGGGACAAAGGCACGG  50

seq1  GAGGCTCAGTAAATTGCCAGAAGCCATCCAGCGGGGTAATGGGAAAGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCAGTAAATTGCCAGAAGCCATCCAGCGGGGTAATGGGAAAGGGC  100

seq1  AGCCTCATCCCACACCTCTGCATCCTATGGCTTCCTCCTCCTCCTCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCATCCCACACCTCTGCATCCTATGGCTTCCTCCTCCTCCTCCTGC  150

seq1  AACTAGCTCTGCTAGACTAGCTGAAGAGATCACAGGGTGTCCCCATGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCTCTGCTAGACTAGCTGAAGAGATCACAGGGTGTCCCCATGGCT  200

seq1  GGACGCCTGCTGGGCTAGGTATTTTCCCATCTCACAATTACCTGAGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCCTGCTGGGCTAGGTATTTTCCCATCTCACAATTACCTGAGATGA  250

seq1  CTGGCTGCAGAGAGAGGGCTTGTTTTGCGTCATAGTTTCCATCCATGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGCAGAGAGAGGGCTTGTTTTGCGTCATAGTTTCCATCCATGACC  300

seq1  TGTTGTTTCAGGTCTATGGCACATCCTGGCAGGTATGGAAAGCAGAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTCAGGTCTATGGCACATCCTGGCAGGTATGGAAAGCAGAATGA  350

seq1  AGCCCCACTTAAAGACCTGATTTTTCTCTTGCTGGGCCATACCTTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCACTTAAAGACCTGATTTTTCTCTTGCTGGGCCATACCTTTTAAA  400

seq1  GGTCCCACTACATCCAATAGTGACACAGGCTGGGGATGAGGTGGGGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCACTACATCCAATAGTGACACAGGCTGGGGATGAGGTGGGGAGGA  450

seq1  GGTACCTTCAACACCTTTGGATAACTTGTTTAAAGCCAGACTGCTTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTTCAACACCTTTGGATAACTTGTTTAAAGCCAGACTGCTTTGTA  500

seq1  ACCTGTAGCCTGGTAGGCATGAAAACACTTGTGTCTTCAGTTTTTTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAGCCTGGTAGGCATGAAAACACTTGTGTCTTCAGTTTTTTGGTT  550

seq1  TTTTTGTTTTTTATTTTTGTTTTGTTTTGTTTTTTCGAGACAGGGTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTTATTTTTGTTTTGTTTTGTTTTTTCGAGACAGGGTTTCC  600

seq1  CTGGCTGTCCTGGAAATCACTCTGTAGACCAGGCTGGCCTCGAACTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCCTGGAAATCACTCTGTAGACCAGGCTGGCCTCGAACTCAGA  650

seq1  AATCCACCTGCCTCTGCATCCCGAGTGCTGGGATTAAAGGCGTGCGCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACCTGCCTCTGCATCCCGAGTGCTGGGATTAAAGGCGTGCGCCAC  700

seq1  TACCACCTGGCGACTTGTGTCTTCATTTAGCATTTAATACCTCAACATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCTGGCGACTTGTGTCTTCATTTAGCATTTAATACCTCAACATGA  750

seq1  CCTGGATGAGAGAC-AATGCCTGT-GGTTCACCTGCCTGTGGGA-TTTGC  797
      |||||||||||||| ||||||||| ||||||||||||||||||| |||||
seq2  CCTGGATGAGAGACAAATGCCTGTGGGTTCACCTGCCTGTGGGATTTTGC  800

seq1  TACTCGGGTTTGCTGTGCTTCAAAAAGAGGGTACAAGGGCTCAGTGGTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCGGGTTTGCTGTGCTTCAAAAAGAGGGTACAAGGGCTCAGTGGTTA  850

seq1  AGAGTACAGACTGC-TCTTCCAGAGGTCCTGAGTTCAAATCCCAGT-AAA  895
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  AGAGTACAGACTGCTTCTTCCAGAGGTCCTGAGTTCAAATCCCAGTAAAA  900

seq1  CACATGGTGGCTCACAACCATCTGTAATGGGAACCGATGCCCTCTTCTAG  945
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACATGGTGGCTCACAACCATCTGTAAT-GGAACCGATGCCCTCTTCTAG  949

seq1  TG-TGCATCTGAAGAC-AGCTGCAGTGTGGTCATATAAATAAAACGTAAA  993
      || ||||||||||||| |||||||||||| ||  |||| |||||||| ||
seq2  TGTTGCATCTGAAGACAAGCTGCAGTGTGTTCTAATAATTAAAACGTTAA  999

seq1  TAAAT-CTCTGAAAAATAAAAAGAGGGGACAAAGGAGAAGGACACTGGTT  1042
      | ||| ||||||||||||||||||||||||| ||||| |||||||||| |
seq2  TTAATCCTCTGAAAAATAAAAAGAGGGGACATAGGAG-AGGACACTGGGT  1048

seq1  TTGGGAAGCCATGCAATGCTTCAACCAGCTATAAGTCCAT  1082
      |||||||| ||||||  |  ||| | ||||||||||||||
seq2  TTGGGAAGTCATGCATAGTCTCATCTAGCTATAAGTCCAT  1088