BAC Information

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BAC

Clone NameB6Ng01-343D17
Chromosome11 (Build37)
Map Location 63,586,203 - 63,708,186
singlet/doubletdoublet
Overlap geneLOC100041690, LOC654442, LOC668297, Hs3st3b1
Upstream geneZfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
Downstream geneCox10, 2810001G20Rik, EG544785, Hs3st3a1, LOC626959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343D17.bB6Ng01-343D17.g
ACCGA126064GA126065
length1,153656
definitionB6Ng01-343D17.b B6Ng01-343D17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,707,030 - 63,708,186)(63,586,203 - 63,586,857)
sequence
gaattcactatggagctgaagcaggcctcagtctgtaggtcctgagtgtg
tgcctccctcttaccttcatagtagccctaaaatccacgcagcacctctg
cttaggtgcatgcaaatgccagtgggggaggggaataacccaatgtgcaa
gatagagtccaaggccaaggatgccccatcctgtctgcacaggagaatca
ttaaagagtcctgtgctggagccgtgcccaggcagggcctggttcattca
gtctgtctgggtggagcccagacatttagtcctcgttaaaccaccctcca
tggttctaatgtgcacccagaggtaaacttggccagcaatgagatacaca
tgactttcttgtaaatattcccacaaggtcaaaggcctccgtgaccctct
aagccgagctggccttcagagtgctgctttgagatctagctcttttaggc
atacggtgttcctggaagttcatgggcatttctacgccctaagatatggt
gacacgcctccctcgctctgcaggtttcacctttctgctcactgtcactt
ctgtttctgttctgtgattcccagacagtgtctctcaggccattctaagg
gacctttgcgtctgtgatctatgtatgagtagtgtctctttttcttatcc
ttgaactgagatagcctgtgccttcagcttcccaagcacttattcctgat
gtgtgccaggtgtttgtgctctcggagaggagaagtctattttcccacct
aggtgacaaagaggagaggaggggctgagccagtggtgcaggagggcagg
ggctgtctggactcattggtgattttccaagcaccgtaatcgcagtaaca
atgggaatatgtgaaccaaagaggcttttttttttgtttcgaaatctgac
tcctatttgagcaattatgatcagcagtgatctgattgggacttaagtat
ctaccattagatcatatctctgagctagagtattaacctgtgagcacaca
ggtgtctaaagaaagacacgctaagctctgtgcactcttcgacttgctca
gacacaggatcgctgaaaggagacatcccattgggttgggaaggaatgca
ccaaggtctccagcctctgtgaacctgggcattcaccctcttctgcttcg
act
gaattctctttaccatgtcccaggggcaaagttgcttgttcacacgtaac
tcatatttaaatttaaatatgtgatctcttgtctaaatgttcttaattaa
aaaaaaaaaaaacaatctggggttttatttcctttggggggaggtagttc
ctttggtgttagttagtctgttttttgtttttttggggggaggggttaac
tcaagttaaaaagataaaaacactttcccactccaaggtcatgaaaatgt
tcctttgagttgtttcctcaaagcttccctggttggtcttccacgtctaa
gcccatagcccatctggagctgattttgtgtatggtgtgagaaaggagct
agggaggtttgcttttccgtgcatccacccatggatcccgcatagagtct
gaagcacagtctttccctcgctgttatttctaattaccattcttctgatt
cctattggtttggtattcaatctagagtacaggtgcttttgcaaacggcc
acactgagccagactctcatgcccttcatgcatgggacatgttttatatt
tgtgctcattttgttttaactaaacattggaacttgcctttatttctgat
aacttttgtcatattattttcactctattggtttcctctatatagaaatt
taaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_63707030_63708186
seq2: B6Ng01-343D17.b_44_1196 (reverse)

seq1  AGTCGAAAGCAG-AGAGGGTG-ATGCCCAGG-TCACAGA-GCT-GAGACC  45
      ||||| |||||| |||||||| ||||||||| ||||||| ||| ||||||
seq2  AGTCG-AAGCAGAAGAGGGTGAATGCCCAGGTTCACAGAGGCTGGAGACC  49

seq1  TCTGGTGCATCTCTTCCC-ACCCATTGGGATGTCTCCTTTTCAGCGATCC  94
      | ||||||||  |||||| ||||| |||||||||||| |||||||||| |
seq2  T-TGGTGCATTCCTTCCCAACCCAATGGGATGTCTCC-TTTCAGCGAT-C  96

seq1  CTGTGTCTGAGCAAGTCGAAGAGTGCACAGAGCTTAGCGTGTCTTTCTTT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTGAGCAAGTCGAAGAGTGCACAGAGCTTAGCGTGTCTTTCTTT  146

seq1  AGACACCTGTGTGCTCACAGGTTAAATACCTCTAGCTCAGAGATTATGAT  194
      ||||||||||||||||||||||| |||| |||||||||||||| ||||||
seq2  AGACACCTGTGTGCTCACAGGTT-AATA-CTCTAGCTCAGAGA-TATGAT  193

seq1  CTTAATGGTAGATACTTAAGTCCCAATCAGATCACTGCTGATCATAATTG  244
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TAATGGTAGATACTTAAGTCCCAATCAGATCACTGCTGATCATAATTG  242

seq1  CTCAAATAGGAGTCAGATTTCGAAACAAAAAAAAAAGCCTCTTTGGTTCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATAGGAGTCAGATTTCGAAACAAAAAAAAAAGCCTCTTTGGTTCA  292

seq1  CATATTCCCATTGTTACCTGCGATTTACGGTGCTTGGAAAATCACCAATG  344
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  CATATTCCCATTGTTA-CTGCGA-TTACGGTGCTTGGAAAATCACCAATG  340

seq1  AGTCCAGACAGCCCCTGCCCTCCTGCACCACTGGCTCAGCCCCTCCTCTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGACAGCCCCTGCCCTCCTGCACCACTGGCTCAGCCCCTCCTCTC  390

seq1  CTCTTTGTCACCTAGGTGGGAAAATAGACTTCTCCTCTCCGAGAGCACAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTCACCTAGGTGGGAAAATAGACTTCTCCTCTCCGAGAGCACAA  440

seq1  ACACCTGGCACACATCAGGAATAAGTGCTTGGGAAGCTGAAGGCACAGGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGCACACATCAGGAATAAGTGCTTGGGAAGCTGAAGGCACAGGC  490

seq1  TATCTCAGTTCAAGGATAAGAAAAAGAGACACTACTCATACATAGATCAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAGTTCAAGGATAAGAAAAAGAGACACTACTCATACATAGATCAC  540

seq1  AGACGCAAAGGTCCCTTAGAATGGCCTGAGAGACACTGTCTGGGAATCAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCAAAGGTCCCTTAGAATGGCCTGAGAGACACTGTCTGGGAATCAC  590

seq1  AGAACAGAAACAGAAGTGACAGTGAGCAGAAAGGTGAAACCTGCAGAGCG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGAAACAGAAGTGACAGTGAGCAGAAAGGTGAAACCTGCAGAGCG  640

seq1  AGGGAGGCGTGTCACCATATCTTAGGGCGTAGAAATGCCCATGAACTTCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGCGTGTCACCATATCTTAGGGCGTAGAAATGCCCATGAACTTCC  690

seq1  AGGAACACCGTATGCCTAAAAGAGCTAGATCTCAAAGCAGCACTCTGAAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACCGTATGCCTAAAAGAGCTAGATCTCAAAGCAGCACTCTGAAG  740

seq1  GCCAGCTCGGCTTAGAGGGTCACGGAGGCCTTTGACCTTGTGGGAATATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTCGGCTTAGAGGGTCACGGAGGCCTTTGACCTTGTGGGAATATT  790

seq1  TACAAGAAAGTCATGTGTATCTCATTGCTGGCCAAGTTTACCTCTGGGTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAAAGTCATGTGTATCTCATTGCTGGCCAAGTTTACCTCTGGGTG  840

seq1  CACATTAGAACCATGGAGGGTGGTTTAACGAGGACTAAATGTCTGGGCTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAGAACCATGGAGGGTGGTTTAACGAGGACTAAATGTCTGGGCTC  890

seq1  CACCCAGACAGACTGAATGAACCAGGCCCTGCCTGGGCACGGCTCCAGCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGACAGACTGAATGAACCAGGCCCTGCCTGGGCACGGCTCCAGCA  940

seq1  CAGGACTCTTTAATGATTCTCCTGTGCAGACAGGATGGGGCATCCTTGGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTCTTTAATGATTCTCCTGTGCAGACAGGATGGGGCATCCTTGGC  990

seq1  CTTGGACTCTATCTTGCACATTGGGTTATTCCCCTCCCCCACTGGCATTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACTCTATCTTGCACATTGGGTTATTCCCCTCCCCCACTGGCATTT  1040

seq1  GCATGCACCTAAGCAGAGGTGCTGCGTGGATTTTAGGGCTACTATGAAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACCTAAGCAGAGGTGCTGCGTGGATTTTAGGGCTACTATGAAGG  1090

seq1  TAAGAGGGAGGCACACACTCAGGACCTACAGACTGAGGCCTGCTTCAGCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGGAGGCACACACTCAGGACCTACAGACTGAGGCCTGCTTCAGCT  1140

seq1  CCATAGTGAATTC  1157
      |||||||||||||
seq2  CCATAGTGAATTC  1153

seq1: chr11_63586203_63586857
seq2: B6Ng01-343D17.g_65_720

seq1  GAATTCTCTTTACCATGTCCCAGGGGCAAAGTTGCTTGTTCACACGTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTACCATGTCCCAGGGGCAAAGTTGCTTGTTCACACGTAAC  50

seq1  TCATATTTAAATTTAAATATGTGATCTCTTGTCTAAATGTTCTTAATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTAAATTTAAATATGTGATCTCTTGTCTAAATGTTCTTAATTAA  100

seq1  AAAAAAAAAAAACAATCTGGGGTTTTATTTCCTTTGGGGGGAGGTAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAACAATCTGGGGTTTTATTTCCTTTGGGGGGAGGTAGTTC  150

seq1  CTTTGGTGTTAGTTAGTCTGTTTTTTGTTTTTTTGGGGGGAGGGGTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGTTAGTTAGTCTGTTTTTTGTTTTTTTGGGGGGAGGGGTTAAC  200

seq1  TCAAGTTAAAAAGATAAAAACACTTTCCCACTCCAAGGTCATGAAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTAAAAAGATAAAAACACTTTCCCACTCCAAGGTCATGAAAATGT  250

seq1  TCCTTTGAGTTGTTTCCTCAAAGCTTCCCTGGTTGGTCTTCCACGTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGAGTTGTTTCCTCAAAGCTTCCCTGGTTGGTCTTCCACGTCTAA  300

seq1  GCCCATAGCCCATCTGGAGCTGATTTTGTGTATGGTGTGAGAAAGGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATAGCCCATCTGGAGCTGATTTTGTGTATGGTGTGAGAAAGGAGCT  350

seq1  AGGGAGGTTTGCTTTTCCGTGCATCCACCCATGGATCCCGCATAGAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTTTGCTTTTCCGTGCATCCACCCATGGATCCCGCATAGAGTCT  400

seq1  GAAGCACAGTCTTTCCCTCGCTGTTATTTCTAATTACCATTCTTCTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACAGTCTTTCCCTCGCTGTTATTTCTAATTACCATTCTTCTGATT  450

seq1  CCTATTGGTTTGGTATTCAATCTAGAGTACAGGTGCTTTTGCAAACGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGGTTTGGTATTCAATCTAGAGTACAGGTGCTTTTGCAAACGGCC  500

seq1  ACACTGAGCCAGACTCTCATGCCCTTCATGCATGGGACATGTTTTATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGCCAGACTCTCATGCCCTTCATGCATGGGACATGTTTTATATT  550

seq1  TGTGCTCA-TTTGTTTTAACTAAACATTGGAACTTGCCTTTTATTTCTGA  599
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  TGTGCTCATTTTGTTTTAACTAAACATTGGAACTTGCC-TTTATTTCTGA  599

seq1  TAACTTTTGTCATATTATTTTCACTCTATT-GTTTCCTCTATATAGAAAT  648
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAACTTTTGTCATATTATTTTCACTCTATTGGTTTCCTCTATATAGAAAT  649

seq1  TTAAAAA  655
      |||||||
seq2  TTAAAAA  656