BAC Information

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BAC

Clone NameB6Ng01-343I18
Chromosome11 (Build37)5 (Build37)
Map Location 69,465,244 - 69,466,193138,218,237 - 138,218,302
singlet/doubletsingletsinglet
Overlap geneFxr2
Upstream geneMyh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532
Downstream geneSox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343I18.bB6Ng01-343I18.g
ACCGA126295GA126296
length955435
definitionB6Ng01-343I18.b B6Ng01-343I18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,465,244 - 69,466,193)(138,218,237 - 138,218,302)
sequence
gaattcttagaggtgtgattaagaatgaagtatggccgggcgtggtgttg
cacgcctttattcccagcacttgggaggcagaggcaggcagatttttgag
ttcgaggccagcctggtctacagagcaagttccaggacagccagggctat
acagagaaaccctgtctggaaaaaccaaaaaaaaaaaaaaaatgaagtat
gagagggtgggtgaatgactcttctttactccacagaagatgaatcaaga
ccccagagacgaaatcgcagccgccgccgccgtaatcgtggtaaccggac
tgatgggtccatcagtggagaccgccaaccaggtcagctgacatacagaa
ttggagcctttctggaactaagatgaaatgtctcattggctgggaaacca
gggttggattcattgggaaccatgaaatcccgaagttcctgaaagtcttg
atcctgtgtctttcctagtgactgtggctgactatatctcacgggcagag
tctcagagccgccagcggcccctggaacgcacgaaaccctcagaggattc
tctttcaggacagaaggtaggcaatcaagatacagcctaccccactttgt
tgttgttgtttgtttgtttgtttggggcagggacacagaaaactttgcaa
agaaagttgaattgactgtatgtgatggagttcaggctaagctgagggta
gagcagagccggcacaaacagaagacagggctggtggtgattgagcacag
gggggtgagggacctggcctccacgtgtgtctgtagtgagaaggaaggcg
tgcttttttttgctgtactcatcagctgcttcctttttgttttcctcctg
cttcctctgtagggtgattctgtcagcaagctttcccaagggcccctcat
ataatggggagctctctgctcccctttggaagttggggtagttgggtgat
tggag
caaacatcgcacaactgcagaaactatctgcagctggcaaaaccacacct
ctgctagagcatgaggcaaatcatagtcagctgctgcaaagcatccccat
gtccccacatctggggtttaaacgaaaacatattcttatatttctatggt
ttttttttttatttgtttgctttttaaatgtttaaaattttacttacatt
ggtgttctgcctccatgtatatctgtgccagggtatcatattccctgcaa
ttggaattacagacggaaattgtgagttgccatctgggtgctgggatttg
aatcccgggtccatttggaagaaaagccagtgctcttaattgctgagcca
tttctccagccccacttctatgttttgtgtgtgtaaaaatctcacatata
tataaatatgtgtgcgagcaactttttttttttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69465244_69466193
seq2: B6Ng01-343I18.b_44_998

seq1  GAATTCTTAGAGGTGTGATTAAGAATGAAGTATGGCCGGGCGTGGTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAGGTGTGATTAAGAATGAAGTATGGCCGGGCGTGGTGTTG  50

seq1  CACGCCTTTATTCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTTTATTCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTTTGAG  100

seq1  TTCGAGGCCAGCCTGGTCTACAGAGCAAGTTCCAGGACAGCCAGGGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGCCAGCCTGGTCTACAGAGCAAGTTCCAGGACAGCCAGGGCTAT  150

seq1  ACAGAGAAACCCTGTCTGGAAAAACCAAAAAAAAAAAAAAAATGAAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTGTCTGGAAAAACCAAAAAAAAAAAAAAAATGAAGTAT  200

seq1  GAGAGGGTGGGTGAATGACTCTTCTTTACTCCACAGAAGATGAATCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGTGGGTGAATGACTCTTCTTTACTCCACAGAAGATGAATCAAGA  250

seq1  CCCCAGAGACGAAATCGCAGCCGCCGCCGCCGTAATCGTGGTAACCGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGACGAAATCGCAGCCGCCGCCGCCGTAATCGTGGTAACCGGAC  300

seq1  TGATGGGTCCATCAGTGGAGACCGCCAACCAGGTCAGCTGACATACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGTCCATCAGTGGAGACCGCCAACCAGGTCAGCTGACATACAGAA  350

seq1  TTGGAGCCTTTCTGGAACTAAGATGAAATGTCTCATTGGCTGGGAAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCCTTTCTGGAACTAAGATGAAATGTCTCATTGGCTGGGAAACCA  400

seq1  GGGTTGGATTCATTGGGAACCATGAAATCCCGAAGTTCCTGAAAGTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGATTCATTGGGAACCATGAAATCCCGAAGTTCCTGAAAGTCTTG  450

seq1  ATCCTGTGTCTTTCCTAGTGACTGTGGCTGACTATATCTCACGGGCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGTCTTTCCTAGTGACTGTGGCTGACTATATCTCACGGGCAGAG  500

seq1  TCTCAGAGCCGCCAGCGGCCCCTGGAACGCACGAAACCCTCAGAGGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGCCGCCAGCGGCCCCTGGAACGCACGAAACCCTCAGAGGATTC  550

seq1  TCTTTCAGGACAGAAGGTAGGCAATCAAGATACAGCCTACCCCACTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGGACAGAAGGTAGGCAATCAAGATACAGCCTACCCCACTTTGT  600

seq1  TGTTGTTGTTTGTTTGTTTGTTTGGGGCAGGGACACAGAAAACTTTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTTGTTTGTTTGTTTGGGGCAGGGACACAGAAAACTTTGCAA  650

seq1  AGAAAGTTGAATTGACTGTATGTGATGGAGTTCAGGCTAAGCTGAGGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTGAATTGACTGTATGTGATGGAGTTCAGGCTAAGCTGAGGGTA  700

seq1  GAGCAGAGCCGGCACAAACAGAAGACAGGGCTGGTGGTGATTGAGCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGCCGGCACAAACAGAAGACAGGGCTGGTGGTGATTGAGCACAG  750

seq1  GGGGGTGAGGGACCTGGCCTCCACGTGTGTCTGTAGTGAGAAGGAAGGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGAGGGACCTGGCCTCCACGTGTGTCTGTAGTGAGAAGGAAGGCG  800

seq1  TGCCTGCATCTGCTGTACTCATCAGCTGCTTCCTTTTTGTTTTCCTCCTG  850
      ||| |   | ||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTTTTGCTGTACTCATCAGCTGCTTCCTTTTTGTTTTCCTCCTG  850

seq1  CTTCCTCTGTAGGGTGACTCTGTCAGCAAGC-TTCCCAAGGGCCCCTCAG  899
      ||||||||||||||||| ||||||||||||| ||||||||||||||||| 
seq2  CTTCCTCTGTAGGGTGATTCTGTCAGCAAGCTTTCCCAAGGGCCCCTCAT  900

seq1  AGAATGGGGAGCTCTCTGC-CCCCTT--GGAGTT-GGGTAGTTTGGTGAA  945
      | ||||||||||||||||| ||||||  | |||| |||||||| ||||| 
seq2  ATAATGGGGAGCTCTCTGCTCCCCTTTGGAAGTTGGGGTAGTTGGGTGAT  950

seq1  TGGAG  950
      |||||
seq2  TGGAG  955

seq1: chr5_138218237_138218302
seq2: B6Ng01-343I18.g_388_507

seq1  TGGAAGAGCAGTCAGTGCTCTTAATCGCTGAGCCATTTCTCCAGCCCACA  50
      |||||||  || ||||||||||||| ||||||||||||||||||||| ||
seq2  TGGAAGAAAAGCCAGTGCTCTTAATTGCTGAGCCATTTCTCCAGCCC-CA  49

seq1  CTTTTTTTTTTTTTAA----------------------------------  66
      ||| | | |||| |                                    
seq2  CTTCTATGTTTTGTGTGTGTAAAAATCTCACATATATATAAATATGTGTG  99

seq1  ---------------------  66
                           
seq2  CGAGCAACTTTTTTTTTTTAA  120