BAC Information

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BAC

Clone NameB6Ng01-344K13
Chromosome11 (Build37)
Map Location 98,316,248 - 98,431,044
singlet/doubletdoublet
Overlap geneGrb7, Ikzf3, Zpbp2
Upstream gene4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik
Downstream geneOrmdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344K13.bB6Ng01-344K13.g
ACCGA127087GA127088
length1,140653
definitionB6Ng01-344K13.b B6Ng01-344K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,316,248 - 98,317,385)(98,430,392 - 98,431,044)
sequence
gaattccaccagctgaaccgaggcatcctgccctgcctgctgcgccactg
ctgtgcccgtgtggccctctgaggccgcacaagctactgcagccatgggt
ttgcctaccacctttctgttctgtggactcggtgcaggtgggtggggtgg
taaacagtggaagagctcctccccccaattttatcccattttttaaaaac
ctctctcaaccagtgaaacatcccctaaacctgtccatccctgactcctg
tccccaagggaggcattgtggtcctgtccccttggtagagctcctgaggt
actgttccagtgaggggcattatgagaggagcggggcagcccaggaggtc
tcataccccacccgtaatctgtacagactgagaggccagttgatctgctc
tgttttataccagtagcaataaagattattttttgatacatctgtgagtc
ctgtctggcaagaacatgtcagagaaccagcagaggtgaaggtcttggtc
aactagaatataccctgaggacaaaaatggtgtcagctgccagagagcgt
ccaaatcctagcaggtatcctggcgcagcctggagtgtcagtcaatactg
gttaaatggatgaatggacactgaataacaaggaatggtgcttttctttc
attttttttttaaacttaaaattatgtctgtgtgtatataagtatgtgtg
tgagtgcacgcaaatgttcaaggaggccagaagggggcgctggatccctc
caagctgtagttagagtcagctgtgtgctgatatggatgttggtaacaaa
ctcagtcttccacaagagtagtacatgcctttaaccactgggccatctct
tcagtccccctcctccaagggactgggcttttctgacagcctagatctgg
gacctgtgatgcatgcttagaatctcagcactccggcagcagctacagga
agaagagttcagggccagcctgggcttgtatgagaccctgtctcaccacc
tcccttctcctcacaactcaaagcaagacgaagtcagcagttgggtggac
attgagtcctgactgacaaatcggatgcacaaggggaaaatgggtctaca
ttccctccagcccctggtttcacaaccttcttcgccctct
gaattctggatcctgaaggggaacctagagcaagctggttacagagacta
gccagatccatgagctctaggttcgattgagaaacctgtctccaaagcat
aggtggaagggtctgaatagtggcaatctaacgggtgtgggtcagaggaa
gatgcaggtcagccctcgccaatcgcttagagggaaaaggagacagagac
caagcaatataataaaggctatgtgtgtgctaatctggaatctcggccat
taacaatttaaactgggcatggtggctcattcctataatcccagcactcg
caggttggaggatttcagcaaataccaggccagccagcgccacaggagga
gactctgtctcaagacaaacaaaataagccaaagggggaaaaaatctaag
gaagaaaacgataggatcatttccgttgaaatgaaagggcaccgtgtaaa
gcaacagaaattcaggaacacactggcgctgctatagtctgaccagagta
tatggaaacacacaggaagcaaaactcagcaggtaagccgggatggccac
gcctaccaggtccacttcctactgcacaggagatctagcaagagcagggc
agcaagagaaagaggacaaacagtaggacttgtgaagggaggaggagggg
gag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_98316248_98317385
seq2: B6Ng01-344K13.b_48_1187

seq1  GAATTCCACCAGCTGAACCGAGGCATCCTGCCCTGCCTGCTGCGCCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCAGCTGAACCGAGGCATCCTGCCCTGCCTGCTGCGCCACTG  50

seq1  CTGTGCCCGTGTGGCCCTCTGAGGCCGCACAAGCTACTGCAGCCATGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCCGTGTGGCCCTCTGAGGCCGCACAAGCTACTGCAGCCATGGGT  100

seq1  TTGCCTACCACCTTTCTGTTCTGTGGACTCGGTGCAGGTGGGTGGGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTACCACCTTTCTGTTCTGTGGACTCGGTGCAGGTGGGTGGGGTGG  150

seq1  TAAACAGTGGAAGAGCTCCTCCCCCCAATTTTATCCCATTTTTTAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTGGAAGAGCTCCTCCCCCCAATTTTATCCCATTTTTTAAAAAC  200

seq1  CTCTCTCAACCAGTGAAACATCCCCTAAACCTGTCCATCCCTGACTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCAACCAGTGAAACATCCCCTAAACCTGTCCATCCCTGACTCCTG  250

seq1  TCCCCAAGGGAGGCATTGTGGTCCTGTCCCCTTGGTAGAGCTCCTGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGGGAGGCATTGTGGTCCTGTCCCCTTGGTAGAGCTCCTGAGGT  300

seq1  ACTGTTCCAGTGAGGGGCATTATGAGAGGAGCGGGGCAGCCCAGGAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCCAGTGAGGGGCATTATGAGAGGAGCGGGGCAGCCCAGGAGGTC  350

seq1  TCATACCCCACCCGTAATCTGTACAGACTGAGAGGCCAGTTGATCTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCCCACCCGTAATCTGTACAGACTGAGAGGCCAGTTGATCTGCTC  400

seq1  TGTTTTATACCAGTAGCAATAAAGATTATTTTTTGATACATCTGTGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATACCAGTAGCAATAAAGATTATTTTTTGATACATCTGTGAGTC  450

seq1  CTGTCTGGCAAGAACATGTCAGAGAACCAGCAGAGGTGAAGGTCTTGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGGCAAGAACATGTCAGAGAACCAGCAGAGGTGAAGGTCTTGGTC  500

seq1  AACTAGAATATACCCTGAGGACAAAAATGGTGTCAGCTGCCAGAGAGCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAATATACCCTGAGGACAAAAATGGTGTCAGCTGCCAGAGAGCGT  550

seq1  CCAAATCCTAGCAGGTATCCTGGCGCAGCCTGGAGTGTCAGTCAATACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCTAGCAGGTATCCTGGCGCAGCCTGGAGTGTCAGTCAATACTG  600

seq1  GTTAAATGGATGAATGGACACTGAATAACAAGGAATGGTGCTTTTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATGGATGAATGGACACTGAATAACAAGGAATGGTGCTTTTCTTTC  650

seq1  ATTTTTTTTTTAAACTTAAAATTATGTCTGTGTGTATATAAGTATGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTAAACTTAAAATTATGTCTGTGTGTATATAAGTATGTGTG  700

seq1  TGAGTGCACGCAAATGTTCAAGGAGGCCAGAAGGGGGCGCTGGATCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCACGCAAATGTTCAAGGAGGCCAGAAGGGGGCGCTGGATCCCTC  750

seq1  CAAGCTGTAGTTAGAGTCAGCTGTGTGCTGATATGGATGTTGGTAACCAA  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAAGCTGTAGTTAGAGTCAGCTGTGTGCTGATATGGATGTTGGTAA-CAA  799

seq1  ACTCAGGTCTTCCACAAGAGTAGTACATGCCTTTAACCACTGGGCCATCT  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCA-GTCTTCCACAAGAGTAGTACATGCCTTTAACCACTGGGCCATCT  848

seq1  CTTCAGTCCCCCTCCTCCAAGGGACTGGGCTTTTCTGACAGCCTAGATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTCCCCCTCCTCCAAGGGACTGGGCTTTTCTGACAGCCTAGATCT  898

seq1  GGGACCTGTGATGCATGCCTAGAATCTCAGCACTCCGGCAGCAGCTACAG  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGGACCTGTGATGCATGCTTAGAATCTCAGCACTCCGGCAGCAGCTACAG  948

seq1  GAAGAAGAGTTCAGGGCCAGCCTGGGC-TGTATGAGACCCTGTCTCACCA  999
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAGAAGAGTTCAGGGCCAGCCTGGGCTTGTATGAGACCCTGTCTCACCA  998

seq1  CCTCCCTTCTCTCCACAAACCAAAGCAAGACG-AGTCAGCAGTT-GGTGG  1047
      |||||||||||  |||||  |||||||||||| ||||||||||| |||||
seq2  CCTCCCTTCTCCTCACAACTCAAAGCAAGACGAAGTCAGCAGTTGGGTGG  1048

seq1  ACAATGAGTCCTGACTGACAGA-CGGATGCCACAGGGGAGAGT-GGTCTC  1095
      ||| |||||||||||||||| | |||||||   |||||| | | ||||| 
seq2  ACATTGAGTCCTGACTGACAAATCGGATGCACAAGGGGAAAATGGGTCTA  1098

seq1  ACTTCCCTCACGCCCCTGTTTTCTACCAACCTCTTCGCCCTCT  1138
        |||||||  ||||||| |||| || | | ||||||||||||
seq2  CATTCCCTCCAGCCCCTGGTTTC-ACAACCTTCTTCGCCCTCT  1140

seq1: chr11_98430392_98431044
seq2: B6Ng01-344K13.g_68_720 (reverse)

seq1  CTCCCCCTCCTCCTCCCTTCACAAGTCCTACTGTTTGTCCTCTTTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTCCTCCTCCCTTCACAAGTCCTACTGTTTGTCCTCTTTCTCTT  50

seq1  GCTGCCCTGCTCTTGCTAGATCTCCTGTGCAGTAGGAAGTGGACCTGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCTGCTCTTGCTAGATCTCCTGTGCAGTAGGAAGTGGACCTGGTA  100

seq1  GGCGTGGCCATCCCGGCTTACCTGCTGAGTTTTGCTTCCTGTGTGTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGCCATCCCGGCTTACCTGCTGAGTTTTGCTTCCTGTGTGTTTCC  150

seq1  ATATACTCTGGTCAGACTATAGCAGCGCCAGTGTGTTCCTGAATTTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTCTGGTCAGACTATAGCAGCGCCAGTGTGTTCCTGAATTTCTGT  200

seq1  TGCTTTACACGGTGCCCTTTCATTTCAACGGAAATGATCCTATCGTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTACACGGTGCCCTTTCATTTCAACGGAAATGATCCTATCGTTTTC  250

seq1  TTCCTTAGATTTTTTCCCCCTTTGGCTTATTTTGTTTGTCTTGAGACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAGATTTTTTCCCCCTTTGGCTTATTTTGTTTGTCTTGAGACAGA  300

seq1  GTCTCCTCCTGTGGCGCTGGCTGGCCTGGTATTTGCTGAAATCCTCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTCCTGTGGCGCTGGCTGGCCTGGTATTTGCTGAAATCCTCCAAC  350

seq1  CTGCGAGTGCTGGGATTATAGGAATGAGCCACCATGCCCAGTTTAAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGAGTGCTGGGATTATAGGAATGAGCCACCATGCCCAGTTTAAATTG  400

seq1  TTAATGGCCGAGATTCCAGATTAGCACACACATAGCCTTTATTATATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGCCGAGATTCCAGATTAGCACACACATAGCCTTTATTATATTGC  450

seq1  TTGGTCTCTGTCTCCTTTTCCCTCTAAGCGATTGGCGAGGGCTGACCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTCTGTCTCCTTTTCCCTCTAAGCGATTGGCGAGGGCTGACCTGC  500

seq1  ATCTTCCTCTGACCCACACCCGTTAGATTGCCACTATTCAGACCCTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTCTGACCCACACCCGTTAGATTGCCACTATTCAGACCCTTCCA  550

seq1  CCTATGCTTTGGAGACAGGTTTCTCAATCGAACCTAGAGCTCATGGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCTTTGGAGACAGGTTTCTCAATCGAACCTAGAGCTCATGGATCT  600

seq1  GGCTAGTCTCTGTAACCAGCTTGCTCTAGGTTCCCCTTCAGGATCCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTCTCTGTAACCAGCTTGCTCTAGGTTCCCCTTCAGGATCCAGAA  650

seq1  TTC  653
      |||
seq2  TTC  653