BAC Information

Click to search

BAC

Clone NameB6Ng01-344N03
Chromosome11 (Build37)
Map Location 115,543,065 - 115,544,198
singlet/doubletsinglet
Overlap geneGrb2
Upstream geneTtyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19
Downstream geneLOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344N03.bB6Ng01-344N03.g
ACCGA127207GA127208
length1,0941,135
definitionB6Ng01-344N03.b B6Ng01-344N03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctaaaatagggacggggtttcgttttctctctctcttgcttc
ttgctctcttgcttcctgcaccctggctcctgaagatgtaagaataaagc
tttgccgcagaagattctggtctgttgcgtctttcctggccggtcgtgag
aacgcgtctaataacagtaactcttaatacgaccaagtttagctgccagc
aagaggtacaaccttgactgcctctggaacacagctcctatgttctctct
ggaaacacttcccagatttcaacctaatggcattggtctcttcttaacca
cagctgattcctcagccccggctaaacaaacaccacagactcatcacata
aactgcgtgtagggtctttgcttccctctgaaatgtcacaagccaggcct
ccgtcgtctccaatgctctccacattcttactaccgaggctcctacagga
cagctcactgggctctcagcactcaatggcttttctagcccaaagttcca
aagtccttcttcccacttctctcagaaatatgttcaggtctgtcatggca
ataccccacttcttataccaacttgtcctaattagagtttttttttttta
attctttaagatttatttattttatgtatatattcgtactctttagctgt
catcagacacaccagaagagacatctaatcccattacagatgcttgtgag
gcaccatgtggttgctgggacttgaactcaggacatctggaagagtagtc
aatgctcttaaccactgagccagctccctaaattagagttattatagcta
tgataaaactccatgaccaaagtaacttggaaggaaagggtttaatcagc
tttatgcttccacatctcaattcatcatcaaacaaagtcaggacagaaac
tcaagtagggcaaggacctagagacaggatctgatacagagggccatgga
gcggtactacttactagcttgcttctcatgggtttgcttcagcctgcttt
tttaatagaagccaggaccaccagcctagggatgatggcttcaggcacaa
taggctggtgccttccctccatcaatccaactaatgaaataatg
gaattcactatatagacatggttagccttgaactcacagagatccacttt
cctcctaggtgctagaattaaagatgtgagccaccacaccccaagagtcc
taatttctgtctgatatccttcaaaccaacccaaactctgccagcaatat
tgcctgacataaagatggcgtccactctccatgcatgcatgctgagaggg
tgagagagatggggatgcacagatttctcccttccctccaagagcttaaa
ctactatgccaaaaggcatccaacaaggcttccagatgcaggacctcctc
atccagggagagaaagacccgatgtagtggcaaaaggcatgcctgtactg
gggacagtggagaggcagctgaaggcaagaagtcctgtaggccactggga
gcgtggtggagttcaaatgtgagtgaaggatgagatggggttagtcacgg
tcagttagctgtgtggagaggctaagcttataacatacaggaaaaagcag
tttgaaaagttgtacaggcaaaaagagcaatatggctgaagactagaaat
gtaagatcacttgatgagccaggtaactaagcactaacagtgagcatgtg
ctgtgtattgctggacacaccatttctgaactactgacaaaggtgttagt
tggtgaaaaactatagtcactctgggcgagaatacgaaactgcaaatttt
tggtgcatgttgaacctcactctaaatgagtctacagtaagggtaaagtt
gtgccttgcttttgtgagacagttctgggataaaaacacagtaattatgg
tttttggagaattcaaagaaattgctgcctctgctctctggacaagcctc
agatgctgctatctgcacagtcagctgaagaccacaccacacaggccgtg
gcacagtcagctcaacaccacattacacaggccatggcacagccacctga
gaagatgcagcactctcaggccactccaggaggacttgcaccaggaagca
accaaagagggcccacaggggactctctagtcctggccacttatctgggg
tgatggtgaagtcaagccagtcttgaataggcccagcagaagggggagta
tgcctgtgagagcaggtatggaattccaacgtcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115543065_115544198
seq2: B6Ng01-344N03.g_70_1204

seq1  GAATTCACTATATAGACATGGTTAGCCTTGAACTCACAGAGATCCACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATATAGACATGGTTAGCCTTGAACTCACAGAGATCCACTTT  50

seq1  CCTCCTAGGTGCTAGAATTAAAGATGTGAGCCACCACACCCCAAGAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAGGTGCTAGAATTAAAGATGTGAGCCACCACACCCCAAGAGTCC  100

seq1  TAATTTCTGTCTGATATCCTTCAAACCAACCCAAACTCTGCCAGCAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTGTCTGATATCCTTCAAACCAACCCAAACTCTGCCAGCAATAT  150

seq1  TGCCTGACATAAAGATGGCGTCCACTCTCCATGCATGCATGCTGAGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGACATAAAGATGGCGTCCACTCTCCATGCATGCATGCTGAGAGGG  200

seq1  TGAGAGAGATGGGGATGCACAGATTTCTCCCTTCCCTCCAAGAGCTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGATGGGGATGCACAGATTTCTCCCTTCCCTCCAAGAGCTTAAA  250

seq1  CTACTATGCCAAAAGGCATCCAACAAGGCTTCCAGATGCAGGACCTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATGCCAAAAGGCATCCAACAAGGCTTCCAGATGCAGGACCTCCTC  300

seq1  ATCCAGGGAGAGAAAGACCCGATGTAGTGGCAAAAGGCATGCCTGTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGAGAGAAAGACCCGATGTAGTGGCAAAAGGCATGCCTGTACTG  350

seq1  GGGACAGTGGAGAGGCAGCTGAAGGCAAGAAGTCCTGTAGGCCACTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGTGGAGAGGCAGCTGAAGGCAAGAAGTCCTGTAGGCCACTGGGA  400

seq1  GCGTGGTGGAGTTCAAATGTGAGTGAAGGATGAGATGGGGTTAGTCACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGTGGAGTTCAAATGTGAGTGAAGGATGAGATGGGGTTAGTCACGG  450

seq1  TCAGTTAGCTGTGTGGAGAGGCTAAGCTTATAACATACAGGAAAAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGCTGTGTGGAGAGGCTAAGCTTATAACATACAGGAAAAAGCAG  500

seq1  TTTGAAAAGTTGTACAGGCAAAAAGAGCAATATGGCTGAAGACTAGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAGTTGTACAGGCAAAAAGAGCAATATGGCTGAAGACTAGAAAT  550

seq1  GTAAGATCACTTGATGAGCCAGGTAACTAAGCACTAACAGTGAGCATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATCACTTGATGAGCCAGGTAACTAAGCACTAACAGTGAGCATGTG  600

seq1  CTGTGTATTGCTGGACACACCATTTCTGAACTACTGACAAAGGTGTTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATTGCTGGACACACCATTTCTGAACTACTGACAAAGGTGTTAGT  650

seq1  TGGTGAAAAACTATAGTCACTCTGGGCGAGAATACGAAACTGCAAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAAAACTATAGTCACTCTGGGCGAGAATACGAAACTGCAAATTTT  700

seq1  TGGTGCATGTTGAACCTCACTCTAAATGAGTCTACAGTAAGGGTAAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATGTTGAACCTCACTCTAAATGAGTCTACAGTAAGGGTAAAGTT  750

seq1  GTGCCTTGCTTTTGTGAGACAGTTCTGGGATAAAAACACAGTAATTATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTGCTTTTGTGAGACAGTTCTGGGATAAAAACACAGTAATTATGG  800

seq1  -TTTTGGAGAATTCAAAGAAA-TGCTGCCTCTGCTCTCTGGACAAGCCTC  848
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTTGGAGAATTCAAAGAAATTGCTGCCTCTGCTCTCTGGACAAGCCTC  850

seq1  AGATGCTGCTATCTGCACAGTCAGCTGAAGACCACACCACACAGGCCGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGCTATCTGCACAGTCAGCTGAAGACCACACCACACAGGCCGTG  900

seq1  GCACAGTCAGCTCAACACCACATTACACAGGCCATGGCACAGCCACCTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTCAGCTCAACACCACATTACACAGGCCATGGCACAGCCACCTGA  950

seq1  GAAGAGGCAGCACTCTCAGGCCACTCCAGGAGGAC-TGCA-CAGGAAGCA  996
      ||||| ||||||||||||||||||||||||||||| |||| |||||||||
seq2  GAAGATGCAGCACTCTCAGGCCACTCCAGGAGGACTTGCACCAGGAAGCA  1000

seq1  ACCAAAGAGGG-CCACAGGGGGACTCTCTAGT-CTTGCCACTTTATCT-G  1043
      ||||||||||| ||||| |||||||||||||| || ||||| |||||| |
seq2  ACCAAAGAGGGCCCACA-GGGGACTCTCTAGTCCTGGCCAC-TTATCTGG  1048

seq1  GGTGATGGTGAATGTCCAAACCAGTCTTGAATAGGCCC--CAGGCAAGAG  1091
      |||||||||||| || ||| ||||||||||||||||||  |||  ||| |
seq2  GGTGATGGTGAA-GT-CAAGCCAGTCTTGAATAGGCCCAGCAG--AAG-G  1093

seq1  GGGAGTAGTGCTGTGAGAGCAGGGCATGGGGATTCAACGTCCA  1134
      |||||||   ||||||||||| || ||||   | |||||||||
seq2  GGGAGTATGCCTGTGAGAGCA-GGTATGGAATTCCAACGTCCA  1135