BAC Information

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BAC

Clone NameB6Ng01-344O08
Chromosome11 (Build37)
Map Location 44,819,190 - 44,893,951
singlet/doubletdoublet
Overlap genenone
Upstream geneIl12b, Ublcp1, 3732413I11Rik, Ebf1
Downstream geneLOC382510, LOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344O08.bB6Ng01-344O08.g
ACCGA127263GA127264
length4401,138
definitionB6Ng01-344O08.b B6Ng01-344O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,893,506 - 44,893,951)(44,819,190 - 44,820,332)
sequence
tctatatgcccctatcctttggaaaaccgattcagctcttcagagctgcc
cagctttcttcaggggaggatccaaaacctctgccctactgggtgttctc
acgcttctcagtaacaagtttacacatgagtatattgtatgtaattttta
actagcacattggttggtgggaatctatgagcaggcatcttctgatgcct
tcagttccagctgccaattaccaaagctttgttttgaatagatttagtta
cactatttgtagaagttagctttcccttattgtagttcatattttgtaat
ttgactttctgatttgtttcagtcttgaatttggagaaattgaaaccatg
gttttagaaaacatagctcatagcctgcttatgcctcctaacccttgact
gctatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

gaattccatatatgccctccagtttaccaagccaaaatctcgctcgcact
ccaccgtcaagagatccaagcttactcaagctggaatcctagatattaac
tctagatctgggctcaaaaacccaaataaagcaaacccacaaaggcaagt
aggtgtgctgttccgggctcccaaatcacacgggtctatacccgcaagac
tccgcaaggtcccaaatcacacaggggtctgtatccgcaagactccgcaa
ggttggaaagttctatattcagtcaacaggtaaagtgctttggagttcag
tgtgaaaggaaactgggagagaggaagggaaggttgaggcttcaaactca
gctttctatgggaaattttgctttcaactgggaagtgttcttaaagaatc
catagcaaagattcagccagcaaggctctgagggggcgtgttcctgctga
cctctgcccttctgtttctgtatgtagttataaatactgtagatttcttt
tgtgattttttttttgccaaagttgttttatttatacattttaatgtctt
aagattttcgatctcacacacgcaaagaattatactgcatattttgcaaa
gaaataaaaagcgcactacctttagcttgcacatacttgcaaagttaatt
caaaaggctttctgtttgtttgttttaatggggattttgtaaaatatcca
tataaataatgtatttatctttggaatttgtacattgcttttctctcctt
cctcccatcccccacccctagtttattttgtgtgtgtgtttgctttgtga
acagtgcgcaagtatagtttggtcacttatagttgtattagctgtttcaa
tgtgatttttaaacaattcatttataggtatttttagtattgttttaaac
catgcttcattttttttatttccacccaaaagccattgtctatttttgta
ttatttgtaagttaagaagttttttccaatatatggcaaaaaaaatagta
gcattattattctgtagtatttaggttctgtagatttaaaaaatatgtac
cctttgcttgagcatacaaaacgctgtttactcttagtattgcatgaatc
tcctccattggagtgacgcaattttgtgcattattggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_44893506_44893951
seq2: B6Ng01-344O08.b_49_494 (reverse)

seq1  CACACACACACACACACACACACACACACACACAAATAGCAGTCAAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAAATAGCAGTCAAGGGT  50

seq1  TAGGAGGCATAAGCAGGCTATGAGCTATGTTTTCTAAAACCATGGTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGCATAAGCAGGCTATGAGCTATGTTTTCTAAAACCATGGTTTCA  100

seq1  ATTTCTCCAAATTCAAGACTGAAACAAATCAGAAAGTCAAATTACAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCAAATTCAAGACTGAAACAAATCAGAAAGTCAAATTACAAAAT  150

seq1  ATGAACTACAATAAGGGAAAGCTAACTTCTACAAATAGTGTAACTAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTACAATAAGGGAAAGCTAACTTCTACAAATAGTGTAACTAAATC  200

seq1  TATTCAAAACAAAGCTTTGGTAATTGGCAGCTGGAACTGAAGGCATCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAAACAAAGCTTTGGTAATTGGCAGCTGGAACTGAAGGCATCAGA  250

seq1  AGATGCCTGCTCATAGATTCCCACCAACCAATGTGCTAGTTAAAAATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTGCTCATAGATTCCCACCAACCAATGTGCTAGTTAAAAATTAC  300

seq1  ATACAATATACTCATGTGTAAACTTGTTACTGAGAAGCGTGAGAACACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATATACTCATGTGTAAACTTGTTACTGAGAAGCGTGAGAACACCC  350

seq1  AGTAGGGCAGAGGTTTTGGATCCTCCCCTGAAGAAAGCTGGGCAGCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGCAGAGGTTTTGGATCCTCCCCTGAAGAAAGCTGGGCAGCTCTG  400

seq1  AAGAGCTGAATCGGTTTTCCAAAGGATAGGGGCATATAGAGAATTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGAATCGGTTTTCCAAAGGATAGGGGCATATAGAGAATTC  446


seq1: chr11_44819190_44820332
seq2: B6Ng01-344O08.g_66_1203

seq1  GAATTCCATATATGCCCTCCAGTTTACCAAGCCAAAATCTCGCTCGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATATGCCCTCCAGTTTACCAAGCCAAAATCTCGCTCGCACT  50

seq1  CCACCGTCAAGAGATCCAAGCTTACTCAAGCTGGAATCCTAGATATTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGTCAAGAGATCCAAGCTTACTCAAGCTGGAATCCTAGATATTAAC  100

seq1  TCTAGATCTGGGCTCAAAAACCCAAATAAAGCAAACCCACAAAGGCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATCTGGGCTCAAAAACCCAAATAAAGCAAACCCACAAAGGCAAGT  150

seq1  AGGTGTGCTGTTCCGGGCTCCCAAATCACACGGGTCTATACCCGCAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCTGTTCCGGGCTCCCAAATCACACGGGTCTATACCCGCAAGAC  200

seq1  TCCGCAAGGTCCCAAATCACACAGGGGTCTGTATCCGCAAGACTCCGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCAAGGTCCCAAATCACACAGGGGTCTGTATCCGCAAGACTCCGCAA  250

seq1  GGTTGGAAAGTTCTATATTCAGTCAACAGGTAAAGTGCTTTGGAGTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAAAGTTCTATATTCAGTCAACAGGTAAAGTGCTTTGGAGTTCAG  300

seq1  TGTGAAAGGAAACTGGGAGAGAGGAAGGGAAGGTTGAGGCTTCAAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGGAAACTGGGAGAGAGGAAGGGAAGGTTGAGGCTTCAAACTCA  350

seq1  GCTTTCTATGGGAAATTTTGCTTTCAACTGGGAAGTGTTCTTAAAGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTATGGGAAATTTTGCTTTCAACTGGGAAGTGTTCTTAAAGAATC  400

seq1  CATAGCAAAGATTCAGCCAGCAAGGCTCTGAGGGGGCGTGTTCCTGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAAAGATTCAGCCAGCAAGGCTCTGAGGGGGCGTGTTCCTGCTGA  450

seq1  CCTCTGCCCTTCTGTTTCTGTATGTAGTTATAAATACTGTAGATTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCCTTCTGTTTCTGTATGTAGTTATAAATACTGTAGATTTCTTT  500

seq1  TGTGATTTTTTTTTTGCCAAAGTTGTTTTATTTATACATTTTAATGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTTTTTTTGCCAAAGTTGTTTTATTTATACATTTTAATGTCTT  550

seq1  AAGATTTTCGATCTCACACACGCAAAGAATTATACTGCATATTTTGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTCGATCTCACACACGCAAAGAATTATACTGCATATTTTGCAAA  600

seq1  GAAATAAAAAGCGCACTACCTTTAGCTTGCACATACTTGCAAAGTTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAAAGCGCACTACCTTTAGCTTGCACATACTTGCAAAGTTAATT  650

seq1  C-AAAGGCTTTCTGTTTGTTTGTTTTAATGGGGATTTTGTAAAATATCCA  699
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCTTTCTGTTTGTTTGTTTTAATGGGGATTTTGTAAAATATCCA  700

seq1  TATAAATAATGTATTTATCTTTGGAATTTGTACATTGCTTTTCTCTCCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATAATGTATTTATCTTTGGAATTTGTACATTGCTTTTCTCTCCTT  750

seq1  CCTCCCATCCCCCACCCCTAGTTTATTTTGTGTGTGTGTTTGCTTTGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATCCCCCACCCCTAGTTTATTTTGTGTGTGTGTTTGCTTTGTGA  800

seq1  ACAGTGCGCAAGTATAGTTTGGTCACTTATAGTTGTATTAGCTGTTTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCGCAAGTATAGTTTGGTCACTTATAGTTGTATTAGCTGTTTCAA  850

seq1  TGTGATTTTTAAACAATTCATTTATAGGTATTTTTAGTATTGTTTTAAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTTAAACAATTCATTTATAGGTATTTTTAGTATTGTTTTAAAC  900

seq1  CATGCTTCA-TTTTTTTATTTCCACCCAAAAGCCATTGTCTATTTTTGTA  948
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTCATTTTTTTTATTTCCACCCAAAAGCCATTGTCTATTTTTGTA  950

seq1  TTATTTGTAAGTTAAGAAGTTTTTTCCAATATATGGC-AAAAAAATAGTA  997
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTATTTGTAAGTTAAGAAGTTTTTTCCAATATATGGCAAAAAAAATAGTA  1000

seq1  GCA-TATTATTCTTGTAGTATTTA-GTTCTGTAGATTTAAAAATAATGTA  1045
      ||| |||||||| ||||||||||| ||||||||||||||||||  |||||
seq2  GCATTATTATTC-TGTAGTATTTAGGTTCTGTAGATTTAAAAAATATGTA  1049

seq1  CCCTTTGCTTTGGAAGCATACAAAAACGCTGTTTTACTC-TAGTAATATG  1094
      ||||||||||    ||||||| ||||||||| ||||||| |||||   ||
seq2  CCCTTTGCTT---GAGCATAC-AAAACGCTG-TTTACTCTTAGTA--TTG  1092

seq1  CATGGAATCTCTCCCTTTGGAGTGACGC-ATTTTGTGCATTAAATTTGGG  1143
      ||| |||||||  || |||||||||||| |||||||||||||   |||||
seq2  CAT-GAATCTCCTCCATTGGAGTGACGCAATTTTGTGCATTA---TTGGG  1138


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