BAC Information

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BAC

Clone NameB6Ng01-344O19
Chromosome11 (Build37)
Map Location 41,801,622 - 41,802,509
singlet/doubletsinglet
Overlap geneGabrg2
Upstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292
Downstream geneGabra1, Gabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344O19.bB6Ng01-344O19.g
ACCGA127283GA127284
length1,206890
definitionB6Ng01-344O19.b B6Ng01-344O19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtactttattttttaattatttgattttctg
gagtccagcttcttgagttctttgtacatattggatattagtcccctata
agatttaggattggtaaagattctttcccaaactgtttgtggcctttttg
tcttattgaccgtgtcttttgccttacagaagctttgcattttcctctgt
gcccatatctttgagtctatcccccactttctcctctataagttttagtg
tctctggttttatgtggagttccttcatccacttagacttcagctttgta
caaggagataagaatgaatcaatttctatggttctacatgataaccacaa
gttgttccatcaccatttgttgaaaatgtccttttccactggatagtttt
agctcctttgtcaaagatcaaatgaccataggtatgtgggttcatttctg
ggtcttcagttctattccattgatctacctgtctgttgctgtaccaatac
catgcagtttttaccacaattgctcaatagtgcagcttgaggtcaggcat
ggtgattcccccaaaagtccttttattgataaggataggttttgctatcc
taggttttttgttattccagatgtattagcaaattgccctttctaactct
attaagaattgagttggaattttgatagggattgcatggaatctgtagat
tgtgttcagcaagatagccatttttactatattaatcctgccaatccatg
atcatgggagatctttccatcttttgagatctacttagatttatttcttc
agagacttgaagttcttatcatgtagatctttcacttccttagttagagt
cataccaatttattttaaatattgatgactattttaaaggtgttgtttct
ctaatttctttctcaacttgtttatcctttgtgtagagaaaggccattgt
tttgttttagttaattttatattcagctacttcattgatgctgttaatca
agtctaggagttcctctgtgaatttttaggatcacttatataatagtatt
aatctgcaaatattgaatattttgacttcctcacctcgattgaatcctcc
tgatctccctttgtttccattgctggctagaacttcaagtactaattgga
acgctaggaagaaagtctccccttgtcctaagttcctggtaatatattta
agatga
gaattccttaccatttttctatgctataattttggcaccatgaaactaaa
tttgtatgaacaaaccagtaagtatacagagagatacttttataactact
ataaatatttgtgtttgaaataactggactaaaacaacagttaacatgtg
attttcgaccttgtttggataaaagacatactaagatttctgagacagca
agactccaacagttaatcaattaattgtcaagcgattggaaattggtatg
tgaactaccgaattcatcattcttcaaaggatatgtacatatcttccttc
agaatgagactgatatcctgaaatattctcaccaacccaaagcccttact
tgagctacagtttaaatttatactatagttgtaagtctgggcactaagaa
atagtttctggcttcacaaattcttttttttttttttttttttttacttt
tctacctttggatatagtggttcaaacatctggatttagtttagtgctca
aattatgccaaaatcctattccctgaggtccttgtatttgtttttacctc
aaacaattctaattataggtatgatgtttacttaatcccataataatttc
aaatttttaattaaaataatcactatgacttcttattcattgttcagaat
tatttttcctgctcatcctatgaaaagtaaattcccataatttaattttt
attcatgtcaccaacctattatttgatttgtttttaatacccattgttat
gttaaactgtcatcactgtgtgtgtgttttcttttttcttttactgttgt
tcattgtttatctctttcctgtctactttctcactgcaaggctgggtggg
gtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41801622_41802509
seq2: B6Ng01-344O19.g_67_956

seq1  GAATTCCTTACCATTTTTCTATGCTATAATTTTGGCACCATGAAACTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACCATTTTTCTATGCTATAATTTTGGCACCATGAAACTAAA  50

seq1  TTTGTATGAACAAACCAGTAAGTATACAGAGAGATACTTTTATAACTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGAACAAACCAGTAAGTATACAGAGAGATACTTTTATAACTACT  100

seq1  ATAAATATTTGTGTTTGAAATAACTGGACTAAAACAACAGTTAACATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATTTGTGTTTGAAATAACTGGACTAAAACAACAGTTAACATGTG  150

seq1  ATTTTCGACCTTGTTTGGATAAAAGACATACTAAGATTTCTGAGACAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCGACCTTGTTTGGATAAAAGACATACTAAGATTTCTGAGACAGCA  200

seq1  AGACTCCAACAGTTAATCAATTAATTGTCAAGCGATTGGAAATTGGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCAACAGTTAATCAATTAATTGTCAAGCGATTGGAAATTGGTATG  250

seq1  TGAACTACCGAATTCATCATTCTTCAAAGGATATGTACATATCTTCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTACCGAATTCATCATTCTTCAAAGGATATGTACATATCTTCCTTC  300

seq1  AGAATGAGACTGATATCCTGAAATATTCTCACCAACCCAAAGCCCTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGACTGATATCCTGAAATATTCTCACCAACCCAAAGCCCTTACT  350

seq1  TGAGCTACAGTTTAAATTTATACTATAGTTGTAAGTCTGGGCACTAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTACAGTTTAAATTTATACTATAGTTGTAAGTCTGGGCACTAAGAA  400

seq1  ATAGTTTCTGGCTTCACAAATTCTTTTTTTTTTTTTTTTTTTTTTACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCTGGCTTCACAAATTCTTTTTTTTTTTTTTTTTTTTTTACTTT  450

seq1  TCTACCTTTGGATATAGTGGTTCAAACATCTGGATTTAGTTTAGTGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTTGGATATAGTGGTTCAAACATCTGGATTTAGTTTAGTGCTCA  500

seq1  AATTATGCCAAAATCCTATTCCCTGAGGTCCTTGTATTTGTTTTTACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGCCAAAATCCTATTCCCTGAGGTCCTTGTATTTGTTTTTACCTC  550

seq1  AAACAATTCTAATTATAGGTATGATGTTTACTTAATCCCATAATAATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTCTAATTATAGGTATGATGTTTACTTAATCCCATAATAATTTC  600

seq1  AAATTTTTAATTAAAATAATCACTATGACTTCTTATTCATTGTTCAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTAATTAAAATAATCACTATGACTTCTTATTCATTGTTCAGAAT  650

seq1  TATTTTTCCTGCTCATCCTATGAAAAGTAAATTCCCATAATTTAATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCTGCTCATCCTATGAAAAGTAAATTCCCATAATTTAATTTTT  700

seq1  ATTCATGTCACCAACCTATTATTTGATTTGTTTTTAATACCCATTGTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGTCACCAACCTATTATTTGATTTGTTTTTAATACCCATTGTTAT  750

seq1  GTTAAACTGTCATCACTGTGTGTGTGTTTTCTTTTTTCTTTTACTGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACTGTCATCACTGTGTGTGTGTTTTCTTTTTTCTTTTACTGTTGT  800

seq1  TCATTGTTTATCTCTTTCCTGTCTACTTTCTCACTGCAAGGCTGG--TGT  848
      |||||||||||||||||||||||||||||||||||||||||||||   | 
seq2  TCATTGTTTATCTCTTTCCTGTCTACTTTCTCACTGCAAGGCTGGGTGGG  850

seq1  GTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGT  888
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGT  890