BAC Information

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BAC

Clone NameB6Ng01-345K04
Chromosome11 (Build37)
Map Location 101,401,841 - 101,588,212
singlet/doubletdoublet
Overlap geneBrca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842
Upstream geneTtc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2
Downstream geneDhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345K04.bB6Ng01-345K04.g
ACCGA127770GA127771
length1,131655
definitionB6Ng01-345K04.b B6Ng01-345K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,401,841 - 101,402,831)(101,587,560 - 101,588,212)
sequence
gaattcaagaccacccagtaccttccctcttcgaaaaggactttccaaac
tgtaccagcagaccaagtgcagagccagataaggaagctgcctgactaaa
caaatgtaaaaacatagttttagcagtcaaaatgaattagcctacaagct
gccaaaacaatattagctgtcctcagagaaataaccataataagattagc
aattctcctgcccccctcccgccccatattgcattctgaaaaagaccaca
aaccaccctgaccttgttgcgagaacattaacagctgtggcgttaatagc
tgatccataagttcagaatgtattactgctttgctgaccaaatcataata
acccaccatggggcaagcaaagtgagtcactaggccaaagggttacttag
tcactatacaaaccaaccaatgcctgaaagggttacttgctacaccaatg
agaatcctgttgctcaaatctgctccttacaaaggtataaaaagtgtgtt
ctttctttgttctgggtctctcctctggcctgcgtgctgggagggaagtc
cccaacatgtaggatcaataaaaatccttatgtgggttgcagcgatggtg
gcggtctttgtggtctttgtgagtaagggtcttttggcgaaccccaacag
aaccactattttagaataattcatgccgggcagtggtggcgcacgccttt
aatcctagtacttgggaggcagagacaggtggatttctgagttcgaggcc
agcctggtctacaaagtgagttccaggacagccaagactacagagaaacc
ctgtcttgaaaaaccaaaaaaaaaaaaaaaaaaaaaagaaagttagaata
attcagtatcaaaggtctgccttgctaggaacaaagatcagaggagaaat
ttgatcctgtgggtgtgctggtgcctccacccctggagaggcagaaggga
gcagatagattctggagagttcagacctgtcaggtccacaatgagacccc
gtctcaaggaaacaaacaaaaagatccttcatcaagcatccagaagcaga
cagaaatacggtctcctccactgctctggattactgcagcatctataaga
tagcctctaagttggaatgaggctcacagca
gaattcatctcttcccagagtcccctccacccagatgagccaccaaataa
aaccaacatatggggcaattaggagggagccagagtttaggggcctgggt
cccccacccctattcccaacacccaggcccccacaatgaccctaggtccc
aaggaagcatccaattgccacacattggtgtgagtctgagccagtcataa
acaccaacttgtggtttagcctttcaaagtcattctccttccaggatatg
accaccttattttatttcattttttaattgcaaagtgctgaaggagggga
aaagaagaaagaagggaggtaaccctctattatgtgggtatgtctggagc
agagatgacttctttttttgtcatgtattggcttcttttgtgacccagag
agacacttatctttcctagctctctcagccaactctcaaattttagtgtg
agatgaatttgtattgaaagggagaaggagccaatggttcggctgataat
gccacatcaagcgtgaagacctgaattcaatccccatactcactttaaaa
cataagaaacaagccaggtggcggtggtgcacacctttaatcttagcatt
ccaaaaacagaggcagtcagatctctgtgagtttgatagccatccctggt
ctaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101401841_101402831
seq2: B6Ng01-345K04.b_201_1178

seq1  AAAACAATATTAGCTGTCCTCAGAGAAATAACCATAATAAGATTAGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATATTAGCTGTCCTCAGAGAAATAACCATAATAAGATTAGCAAT  50

seq1  TCTCCTGCCCCCCTCCCGCCCCATATTGCATTCTGAAAAAGACCACAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCCCCCCTCCCGCCCCATATTGCATTCTGAAAAAGACCACAAAC  100

seq1  CACCCTGACCTTGTTGCGAGAACATTAACAGCTGTGGCGTTAATAGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGACCTTGTTGCGAGAACATTAACAGCTGTGGCGTTAATAGCTGA  150

seq1  TCCATAAGTTCAGAATGTATTACTGCTTTGCTGACCAAATCATAATAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGTTCAGAATGTATTACTGCTTTGCTGACCAAATCATAATAACC  200

seq1  CACCATGGGGCAAGCAAAGTGAGTCACTAGGCCAAAGGGTTACTTAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGGGCAAGCAAAGTGAGTCACTAGGCCAAAGGGTTACTTAGTCA  250

seq1  CTATACAAACCAACCAATGCCTGAAAGGGTTACTTGCTACACCAATGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAAACCAACCAATGCCTGAAAGGGTTACTTGCTACACCAATGAGA  300

seq1  ATCCTGTTGCTCAAATCTGCTCCTTACAAAGGTATAAAAAGTGTGTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTGCTCAAATCTGCTCCTTACAAAGGTATAAAAAGTGTGTTCTT  350

seq1  TCTTTGTTCTGGGTCTCTCCTCTGGCCTGCGTGCTGGGAGGGAAGTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTCTGGGTCTCTCCTCTGGCCTGCGTGCTGGGAGGGAAGTCCCC  400

seq1  AACATGTAGGATCAATAAAAATCCTTATGTGGGTTGCAGCGATGGTGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTAGGATCAATAAAAATCCTTATGTGGGTTGCAGCGATGGTGGCG  450

seq1  GTCTTTGTGGTCTTTGTGAGTAAGGGTCTTTTGGCGAACCCCAACAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTGGTCTTTGTGAGTAAGGGTCTTTTGGCGAACCCCAACAGAAC  500

seq1  CACTATTTTAGAATAATTCATGCCGGGCAGTGGTGGCGCACGCCTTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTTTAGAATAATTCATGCCGGGCAGTGGTGGCGCACGCCTTTAAT  550

seq1  CCTAGTACTTGGGAGGCAGAGACAGGTGGATTTCTGAGTTCGAGGCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTACTTGGGAGGCAGAGACAGGTGGATTTCTGAGTTCGAGGCCAGC  600

seq1  CTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGACTACAGAGAAACCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGACTACAGAGAAACCCTG  650

seq1  TCTTGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGTTAGAATA  700
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAAACC---AAAAAAAAAAAAAAAAAAAAAAGAAAGTTAGAATA  697

seq1  ATTCAGTATCAAAGGTCTGCCTTGCTAGGAACAAAGATCAGAGGAGAAAA  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTCAGTATCAAAGGTCTGCCTTGCTAGGAACAAAGATCAGAGGAG-AAA  746

seq1  TTTGATCCTGTGGGTGTGCTGGTGCCTCCACCCCTGGAGAGGCAGAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTGATCCTGTGGGTGTGCTGGTGCCTCCACCCCTGGAGAGGCAG-AAGG  795

seq1  AAGCAGATAGATTCT-GAGAGTTCAAGACCTGTCAGGGTTCCACAATGAG  849
       |||||||||||||| |||||||| ||||||||||||  |||||||||||
seq2  GAGCAGATAGATTCTGGAGAGTTC-AGACCTGTCAGG--TCCACAATGAG  842

seq1  ACCCCGTCTCAAAGGAAACAAAACAAAAGATCCTTTCATCAAGCATTCAG  899
      |||||||||| |||||||||||  ||||||||| |||||||||||| |||
seq2  ACCCCGTCTC-AAGGAAACAAACAAAAAGATCC-TTCATCAAGCATCCAG  890

seq1  AAAGCAGACAGAAATACCGGTCTCCT-CACTGCTCTGGATTACTGCCAGC  948
       ||||||||||||||| ||||||||| |||||||||||||||||| ||||
seq2  -AAGCAGACAGAAATA-CGGTCTCCTCCACTGCTCTGGATTACTG-CAGC  937

seq1  ATCTATAAGATTAGCTCTAGGTTGGGAATGAGGCTCAACAGCA  991
      |||||||||||   ||||| ||| |||||||||||| ||||||
seq2  ATCTATAAGATAGCCTCTAAGTT-GGAATGAGGCTC-ACAGCA  978

seq1: chr11_101587560_101588212
seq2: B6Ng01-345K04.g_69_723 (reverse)

seq1  TGTAGACCA-GGCTGGCT-TCAAACTCACAGAGATCTGACTGCCTCTGTT  48
      ||||||||| || ||||| |||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGGATGGCTATCAAACTCACAGAGATCTGACTGCCTCTGTT  50

seq1  TCTGGAATGCTAAGATTAAAGGTGTGCACCACCGCCACCTGGCTTGTTTC  98
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATGCTAAGATTAAAGGTGTGCACCACCGCCACCTGGCTTGTTTC  100

seq1  TTATGTTTTAAAGTGAGTATGGGGATTGAATTCAGGTCTTCACGCTTGAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTAAAGTGAGTATGGGGATTGAATTCAGGTCTTCACGCTTGAT  150

seq1  GTGGCATTATCAGCCGAACCATTGGCTCCTTCTCCCTTTCAATACAAATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATTATCAGCCGAACCATTGGCTCCTTCTCCCTTTCAATACAAATT  200

seq1  CATCTCACACTAAAATTTGAGAGTTGGCTGAGAGAGCTAGGAAAGATAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCACACTAAAATTTGAGAGTTGGCTGAGAGAGCTAGGAAAGATAAG  250

seq1  TGTCTCTCTGGGTCACAAAAGAAGCCAATACATGACAAAAAAAGAAGTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTGGGTCACAAAAGAAGCCAATACATGACAAAAAAAGAAGTCA  300

seq1  TCTCTGCTCCAGACATACCCACATAATAGAGGGTTACCTCCCTTCTTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTCCAGACATACCCACATAATAGAGGGTTACCTCCCTTCTTTCT  350

seq1  TCTTTTCCCCTCCTTCAGCACTTTGCAATTAAAAAATGAAATAAAATAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCCCTCCTTCAGCACTTTGCAATTAAAAAATGAAATAAAATAAG  400

seq1  GTGGTCATATCCTGGAAGGAGAATGACTTTGAAAGGCTAAACCACAAGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCATATCCTGGAAGGAGAATGACTTTGAAAGGCTAAACCACAAGTT  450

seq1  GGTGTTTATGACTGGCTCAGACTCACACCAATGTGTGGCAATTGGATGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTATGACTGGCTCAGACTCACACCAATGTGTGGCAATTGGATGCT  500

seq1  TCCTTGGGACCTAGGGTCATTGTGGGGGCCTGGGTGTTGGGAATAGGGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGGACCTAGGGTCATTGTGGGGGCCTGGGTGTTGGGAATAGGGGT  550

seq1  GGGGGACCCAGGCCCCTAAACTCTGGCTCCCTCCTAATTGCCCCATATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACCCAGGCCCCTAAACTCTGGCTCCCTCCTAATTGCCCCATATGT  600

seq1  TGGTTTTATTTGGTGGCTCATCTGGGTGGAGGGGACTCTGGGAAGAGATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTATTTGGTGGCTCATCTGGGTGGAGGGGACTCTGGGAAGAGATG  650

seq1  AATTC  653
      |||||
seq2  AATTC  655