BAC Information

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BAC

Clone NameB6Ng01-345N01
Chromosome11 (Build37)
Map Location 86,507,252 - 86,649,706
singlet/doubletdoublet
Overlap geneCltc, Dhx40
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2
Downstream geneYpel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345N01.bB6Ng01-345N01.g
ACCGA127891GA127892
length1,0001,049
definitionB6Ng01-345N01.b B6Ng01-345N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,507,252 - 86,508,256)(86,648,647 - 86,649,706)
sequence
gaattcttgttgggaaaaatcttcaaggaaacaatagagtaaggccagaa
aaacagctcagttctccagagaaactgactgttcttccagaggaccaggt
tcaattcctaggacccacagggtaacttaacttccaccccagaggatctg
agcccctcatctggattctgggggcattgtatgcacatttacacaggcaa
aacacccgtactcataaaataaatgagatttcaagttgtttctattaagg
gaaaagagcatcattcacaagtttaggaaaagtcaagaatgaactgactg
atatatctcttgattccttacggtagtaggtagagttctgggaacacagt
gcagctctagcctgagagttcacggtttcactaagacgaatgaaaagtga
ctttaacagtaatactaatttgctaagggtgtgtatgtgaagctgatgtt
aattagcctgagagttgtagagcaatagaagctaggcaatatgctctata
actatagataattaagttgttaacaaagtaaattcaatattctcagccat
ggcaaaaatttaaattatggagccctttatgttgaaaagaaataccatga
tattttaaaaaatatacctttatttcaagtcagtgtaacactcatacttt
tcttagttacgtgaaatgcataaagccctggagtgctacttgattaaaat
gctggaaacgtgagaaggagtccactattcactgactgctgtataatctt
tcataactacaggaatgtaattgacataatgcatctctttttcataattt
ccctctatggctcccggtaatgctccagcagtatccagtatgaaactatg
aaaccatgattctggtttgagatgtatttaattaaaactgcaattctaca
tgttattttccacagtccagtatttatttaaattggaggtattcaaatcc
acaaacaaaaactgagaacagcatatctgtttgaattctcttcttctgta

gaattcaaggctatccaaggctacacagtgaattcctgtctcaaaaacaa
aacaaaataacaaaaacaaccaaacaaccctgaaacgtaactgtaacaaa
gtggccaggtctggagagatgactcagtgggtaagagttcttgctgctct
tccagagaaccgaggtttaattcccaaatggcagctcacaactataccta
actccagtttcagggggtctgactccccattctggccttcaggtgcactg
cacacacatggtgcatagatactgagacacatacaataaaagtaaataaa
atctttaaacaaataaggtgatggaattcaagctgttggtagagtgcttg
cctagtttacatcaagctgcaggccctatcccaagtattccttgaaaaat
ggtggggtggtgtagctctatcaccccagttctcaggaaggacaagcagg
atcagaaagtcaaggccattctgagccacactgtgagttccaggccagta
tgagctacgtgagattctgtgtaatagaattctgtgcaaataaacaacaa
caacaaaataacaaagcatgagagactggaaaaacatgacatatcaacca
ttggctttcacaggcatgtgtgctcacctacacacacggacacacacaaa
taaagaaaagagaaaaaaaatggccctgataccctgtagttggcagccca
cagctggtctcagagcgttcccttaccaaagataaacagttttcacagag
taacaacaatcctcaggcgaggtcacttggttgtcttggggaaacaaggc
aataaggaaaatcagcatggacacagaaaaggacattcaacaaccacaaa
aacatccttacggttctagctacgtggacaagaacctagcctttttatcg
tgttaatgggatgaggttgacagctgatgtctccatcctagtctctctgc
tgcctccctaccttctcaacacttctcatgcaaactaatcctggtaatga
ctgagcttcagctagtcattgacacgtgatgacgacttttgcttggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_86507252_86508256
seq2: B6Ng01-345N01.b_46_1045

seq1  GAATTCTTGTTGGGAAAAATCTTCAAGGAAACAATAGAGTAAGGCCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTGGGAAAAATCTTCAAGGAAACAATAGAGTAAGGCCAGAA  50

seq1  AAACAGCTCAGTTCTCCAGAGAAACTGACTGTTCTTCCAGAGGACCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTCAGTTCTCCAGAGAAACTGACTGTTCTTCCAGAGGACCAGGT  100

seq1  TCAATTCCTAGGACCCACAGGGTAACTTAACTTCCACCCCAGAGGATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCTAGGACCCACAGGGTAACTTAACTTCCACCCCAGAGGATCTG  150

seq1  AGCCCCTCATCTGGATTCTGGGGGCATTGTATGCACATTTACACAGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTCATCTGGATTCTGGGGGCATTGTATGCACATTTACACAGGCAA  200

seq1  AACACCCGTACTCATAAAATAAATGAGATTTCAAGTTGTTTCTATTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCGTACTCATAAAATAAATGAGATTTCAAGTTGTTTCTATTAAGG  250

seq1  GAAAAGAGCATCATTCACAAGTTTAGGAAAAGTCAAGAATGAACTGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGCATCATTCACAAGTTTAGGAAAAGTCAAGAATGAACTGACTG  300

seq1  ATATATCTCTTGATTCCTTACGGTAGTAGGTAGAGTTCTGGGAACACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTCTTGATTCCTTACGGTAGTAGGTAGAGTTCTGGGAACACAGT  350

seq1  GCAGCTCTAGCCTGAGAGTTCACGGTTTCACTAAGACGAATGAAAAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCTAGCCTGAGAGTTCACGGTTTCACTAAGACGAATGAAAAGTGA  400

seq1  CTTTAACAGTAATACTAATTTGCTAAGGGTGTGTATGTGAAGCTGATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACAGTAATACTAATTTGCTAAGGGTGTGTATGTGAAGCTGATGTT  450

seq1  AATTAGCCTGAGAGTTGTAGAGCAATAGAAGCTAGGCAATATGCTCTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCCTGAGAGTTGTAGAGCAATAGAAGCTAGGCAATATGCTCTATA  500

seq1  ACTATAGATAATTAAGTTGTTAACAAAGTAAATTCAATATTCTCAGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGATAATTAAGTTGTTAACAAAGTAAATTCAATATTCTCAGCCAT  550

seq1  GGCAAAAATTTAAATTATGGAGCCCTTTATGTTGAAAAGAAATACCATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAATTTAAATTATGGAGCCCTTTATGTTGAAAAGAAATACCATGA  600

seq1  TATTTTAAAAAATATACCTTTATTTCAAGTCAGTGTAACACTCATACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAAAAATATACCTTTATTTCAAGTCAGTGTAACACTCATACTTT  650

seq1  TCTTAGTTACGTGAAATGCATAAAGCCCTGGAGTGCTACTTGATTAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTTACGTGAAATGCATAAAGCCCTGGAGTGCTACTTGATTAAAAT  700

seq1  GCTGGAAACGTGAGAAGGAGTCCACTATTCACTGACTGCTGTATAATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAACGTGAGAAGGAGTCCACTATTCACTGACTGCTGTATAATCTT  750

seq1  TCATAACTACAGGAATGTAATTGACATAATGCATCTCTTTTTCATAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACTACAGGAATGTAATTGACATAATGCATCTCTTTTTCATAATTT  800

seq1  CCCTCTATGGCTCCCGGTAATGCTCCAGCAGTATCCAGTATGAAACTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTATGGCTCCCGGTAATGCTCCAGCAGTATCCAGTATGAAACTATG  850

seq1  AAAACCATGATTCTGGTTTGAGATGTATTTAATTAAAACTGCAATTCTAC  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAACCATGATTCTGGTTTGAGATGTATTTAATTAAAACTGCAATTCTAC  899

seq1  ATGTTA-TTTCCACAGTCCAGTAATTTATTTTAAATTGGAGTAATTTCAA  949
      |||||| ||||||||||||||| ||||| ||||||||||||  | |||||
seq2  ATGTTATTTTCCACAGTCCAGT-ATTTA-TTTAAATTGGAGGTA-TTCAA  946

seq1  ATTCCACAAAC-AAAACTGAAGAACAGCAATATCTTGTTTGAATTCTC-T  997
      | ||||||||| ||||||| |||||||| ||||| ||||||||||||| |
seq2  A-TCCACAAACAAAAACTG-AGAACAGC-ATATC-TGTTTGAATTCTCTT  992

seq1  CTTCTGTA  1005
      ||||||||
seq2  CTTCTGTA  1000

seq1: chr11_86648647_86649706
seq2: B6Ng01-345N01.g_66_1114 (reverse)

seq1  CAACCAAACAAAAGTCGTCCATTCACGTGGTCAATGACCTAAGCTGAAAC  50
      ||||||| |||||||||||   |||||| |||||||||   ||||| || 
seq2  CAACCAAGCAAAAGTCGTC--ATCACGT-GTCAATGAC--TAGCTG-AAG  44

seq1  CTCAGTCATTACACAGGGATTAGTTTGCATGAGAAGGTGTTTGAGGAAGG  100
      |||||||||||| || ||||||||||||||||||| ||| |||| |||||
seq2  CTCAGTCATTAC-CA-GGATTAGTTTGCATGAGAA-GTG-TTGA-GAAGG  89

seq1  TAGGGAGGCAGCAGAGAGAACTAGGATGGAGACAACAGCTGGCAACCTCA  150
      |||||||||||||||||| ||||||||||||||| |||||| ||||||||
seq2  TAGGGAGGCAGCAGAGAG-ACTAGGATGGAGACATCAGCTGTCAACCTCA  138

seq1  TCCCATTAACACGAT-AAAAGGCTAGGTTCTTGTCCACGTAGCTAGAACC  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCCATTAACACGATAAAAAGGCTAGGTTCTTGTCCACGTAGCTAGAACC  188

seq1  GTAAGGATGTTTTTGTGGTTGTTGAATGTCCTTTTCTGTGTCCATGCTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGATGTTTTTGTGGTTGTTGAATGTCCTTTTCTGTGTCCATGCTGA  238

seq1  TTTTCCTTATTGCCTTGTTTCCCCAAGACAACCAAGTGACCTCGCCTGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTATTGCCTTGTTTCCCCAAGACAACCAAGTGACCTCGCCTGAG  288

seq1  GATTGTTGTTACTCTGTGAAAACTGTTTATCTTTGGTAAGGGAACGCTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTGTTACTCTGTGAAAACTGTTTATCTTTGGTAAGGGAACGCTCT  338

seq1  GAGACCAGCTGTGGGCTGCCAACTACAGGGTATCAGGGCCATTTTTTTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAGCTGTGGGCTGCCAACTACAGGGTATCAGGGCCATTTTTTTTC  388

seq1  TCTTTTCTTTATTTGTGTGTGTCCGTGTGTGTAGGTGAGCACACATGCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTATTTGTGTGTGTCCGTGTGTGTAGGTGAGCACACATGCCT  438

seq1  GTGAAAGCCAATGGTTGATATGTCATGTTTTTCCAGTCTCTCATGCTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGCCAATGGTTGATATGTCATGTTTTTCCAGTCTCTCATGCTTTG  488

seq1  TTATTTTGTTGTTGTTGTTTATTTGCACAGAATTCTATTACACAGAATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTTGTTGTTGTTTATTTGCACAGAATTCTATTACACAGAATCT  538

seq1  CACGTAGCTCATACTGGCCTGGAACTCACAGTGTGGCTCAGAATGGCCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTAGCTCATACTGGCCTGGAACTCACAGTGTGGCTCAGAATGGCCTT  588

seq1  GACTTTCTGATCCTGCTTGTCCTTCCTGAGAACTGGGGTGATAGAGCTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTGATCCTGCTTGTCCTTCCTGAGAACTGGGGTGATAGAGCTAC  638

seq1  ACCACCCCACCATTTTTCAAGGAATACTTGGGATAGGGCCTGCAGCTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCCACCATTTTTCAAGGAATACTTGGGATAGGGCCTGCAGCTTGA  688

seq1  TGTAAACTAGGCAAGCACTCTACCAACAGCTTGAATTCCATCACCTTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACTAGGCAAGCACTCTACCAACAGCTTGAATTCCATCACCTTATT  738

seq1  TGTTTAAAGATTTTATTTACTTTTATTGTATGTGTCTCAGTATCTATGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAGATTTTATTTACTTTTATTGTATGTGTCTCAGTATCTATGCA  788

seq1  CCATGTGTGTGCAGTGCACCTGAAGGCCAGAATGGGGAGTCAGACCCCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTGTGCAGTGCACCTGAAGGCCAGAATGGGGAGTCAGACCCCCT  838

seq1  GAAACTGGAGTTAGGTATAGTTGTGAGCTGCCATTTGGGAATTAAACCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGGAGTTAGGTATAGTTGTGAGCTGCCATTTGGGAATTAAACCTC  888

seq1  GGTTCTCTGGAAGAGCAGCAAGAACTCTTACCCACTGAGTCATCTCTCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCTGGAAGAGCAGCAAGAACTCTTACCCACTGAGTCATCTCTCCA  938

seq1  GACCTGGCCACTTTGTTACAGTTACGTTTCAGGGTTGTTTGGTTGTTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGCCACTTTGTTACAGTTACGTTTCAGGGTTGTTTGGTTGTTTTT  988

seq1  GTTATTTTGTTTTGTTTTTGAGACAGGAATTCACTGTGTAGCCTTGGATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTGTTTTGTTTTTGAGACAGGAATTCACTGTGTAGCCTTGGATA  1038

seq1  GCCTTGAATTC  1060
      |||||||||||
seq2  GCCTTGAATTC  1049