BAC Information

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BAC

Clone NameB6Ng01-345N06
Chromosome11 (Build37)
Map Location 73,857,732 - 73,858,849
singlet/doubletsinglet
Overlap geneOlfr139
Upstream gene1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398
Downstream geneOlfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345N06.bB6Ng01-345N06.g
ACCGA127901GA127902
length1,1601,116
definitionB6Ng01-345N06.b B6Ng01-345N06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcttccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactaa
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcctctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
aggacccagatgtagctgtctcttgtgagactatgcccggggcctagcaa
acacagaagtggatgctcacagtcagctactggatggatctcaggctccc
aatggaggagctagagaaagtagccaaggagctaaaggatctgcaaccta
tagtggacacatatgactacagtaccccggagctcttgactctagctgca
tatgtatcaaaagatgctagtcaggcaatcacttgaaagagaggtcatga
cacgcaacttatattgctagtcagatcgctagcaatatggtatgctggct
atgggaattt
gaattcctccaactgtgcacttgagcttccagtatgagaatgccaaggac
atatgtaaggatggcaggacattttaatagccttgtcctgtcttctcaca
ctggatacctctttcctgtcagcaccctcttcagggcaccctgtacatct
gggttccggaggctgtagatgagtgggtttaacatagggctgaggatagt
attgaggatcccaatgcccttgtccttgtctgaggctgagacagaaccca
gacgcatgtaactgaagaagccagttccataaaagatacagaccacagtg
aggtgggagccgcatgtggaaaatgccttcttcctcccctctgtggagcg
gatccgtagtactgcagctgcaacgtgggcataggacactgagataagta
tcatggggactactcccatgaaagtggctcccacaaaaagcagttgccca
ttgaggtagatgctggagcaggagagctggaaaagaggtggaaggtcaca
gtagaagtggttgaccacattagggccacagaaatccagcacagacactg
ccactgtgtgagtcagagcattaatgaaggagacagtacagcaaataccc
accagtgtgccctgcacttcacggctcatgcgggtgctgtaggtgagggg
ctggcagatggccaggtagcggtcataggccatggctgtcaagagatgac
agtccacacctgccaggaggtggaaaaaaaagagctgtgaaatgcaggca
gcgtagggaactctgcactcatgagccaggagacacacaagcattggagg
aacagtgacactgatgcatccgatgtccaacagagatagattccccaaga
agtagtacataggagtgtggagcttgggttccacaagatggcggcccaag
atgctgaggttacccccaactgtgacaatataggcaaagaagaagacaac
aaaaagggataggttgcagtcttacatttcctgttaagccaaggagggat
gaaattccgtgacagctgtctgttccccaggcactgggctcatagtcact
gctatgagcctgagagccaaggaggtaaggagtagattctcacaatagaa
ggcagaggcatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_73857732_73858849
seq2: B6Ng01-345N06.g_66_1181

seq1  GAATTCCTCCAACTGTGCACTTGAGCTTCCAGTATGAGAATGCCAAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCAACTGTGCACTTGAGCTTCCAGTATGAGAATGCCAAGGAC  50

seq1  ATATGTAAGGATGGCAGGACATTTTAATAGCCTTGTCCTGTCTTCTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGGATGGCAGGACATTTTAATAGCCTTGTCCTGTCTTCTCACA  100

seq1  CTGGATACCTCTTTCCTGTCAGCACCCTCTTCAGGGCACCCTGTACATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATACCTCTTTCCTGTCAGCACCCTCTTCAGGGCACCCTGTACATCT  150

seq1  GGGTTCCGGAGGCTGTAGATGAGTGGGTTTAACATAGGGCTGAGGATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCGGAGGCTGTAGATGAGTGGGTTTAACATAGGGCTGAGGATAGT  200

seq1  ATTGAGGATCCCAATGCCCTTGTCCTTGTCTGAGGCTGAGACAGAACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGATCCCAATGCCCTTGTCCTTGTCTGAGGCTGAGACAGAACCCA  250

seq1  GACGCATGTAACTGAAGAAGCCAGTTCCATAAAAGATACAGACCACAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCATGTAACTGAAGAAGCCAGTTCCATAAAAGATACAGACCACAGTG  300

seq1  AGGTGGGAGCCGCATGTGGAAAATGCCTTCTTCCTCCCCTCTGTGGAGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGAGCCGCATGTGGAAAATGCCTTCTTCCTCCCCTCTGTGGAGCG  350

seq1  GATCCGTAGTACTGCAGCTGCAACGTGGGCATAGGACACTGAGATAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCGTAGTACTGCAGCTGCAACGTGGGCATAGGACACTGAGATAAGTA  400

seq1  TCATGGGGACTACTCCCATGAAAGTGGCTCCCACAAAAAGCAGTTGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGGACTACTCCCATGAAAGTGGCTCCCACAAAAAGCAGTTGCCCA  450

seq1  TTGAGGTAGATGCTGGAGCAGGAGAGCTGGAAAAGAGGTGGAAGGTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTAGATGCTGGAGCAGGAGAGCTGGAAAAGAGGTGGAAGGTCACA  500

seq1  GTAGAAGTGGTTGACCACATTAGGGCCACAGAAATCCAGCACAGACACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGTGGTTGACCACATTAGGGCCACAGAAATCCAGCACAGACACTG  550

seq1  CCACTGTGTGAGTCAGAGCATTAATGAAGGAGACAGTACAGCAAATACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGTGAGTCAGAGCATTAATGAAGGAGACAGTACAGCAAATACCC  600

seq1  ACCAGTGTGCCCTGCACTTCACGGCTCATGCGGGTGCTGTAGGTGAGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTGCCCTGCACTTCACGGCTCATGCGGGTGCTGTAGGTGAGGGG  650

seq1  CTGGCAGATGGCCAGGTAGCGGTCATAGGCCATGGCTGTCAAGAGATGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGATGGCCAGGTAGCGGTCATAGGCCATGGCTGTCAAGAGATGAC  700

seq1  AGTCCACACCTGCCAGGAGGTGGAAAAAAAAGAGCTGTGAAATGCAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACACCTGCCAGGAGGTGGAAAAAAAAGAGCTGTGAAATGCAGGCA  750

seq1  GCGTAGGGAACTCTGCACTCATGAGCCAGGAGACACACAAGCATTGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAGGGAACTCTGCACTCATGAGCCAGGAGACACACAAGCATTGGAGG  800

seq1  AACAGTGACACTGATGCATCCGATGTCCAACAGAGATAGATTCCCCAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGACACTGATGCATCCGATGTCCAACAGAGATAGATTCCCCAAGA  850

seq1  AGTAGTACATAGGAGTGTGGAGCTTGGGTTCCACAAAGATGGCGG-CCAA  899
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  AGTAGTACATAGGAGTGTGGAGCTTGGGTTCCAC-AAGATGGCGGCCCAA  899

seq1  GATGCTGAGGTTACCCCCAACTGTGACAATATAGGCAAAGAAGAAGACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGAGGTTACCCCCAACTGTGACAATATAGGCAAAGAAGAAGACAA  949

seq1  CAAAAA-GGATAGGTTGCAGTCTTACATTTCCTGTTAAGCCAA-GAAGGA  997
      |||||| |||||||||||||||||||||||||||||||||||| || |||
seq2  CAAAAAGGGATAGGTTGCAGTCTTACATTTCCTGTTAAGCCAAGGAGGGA  999

seq1  TGAAA-TCCGTGACAGCTGTCCTGTTTCCCCAGGCACCTGGCTCCATAGG  1046
      ||||| |||||||||||||| ||| ||||||||||||  |||| |||| |
seq2  TGAAATTCCGTGACAGCTGT-CTG-TTCCCCAGGCACTGGGCT-CATA-G  1045

seq1  CCACTGCTATGAGCTGGAGAGCAAAGGAGG-AAGAGTTAGA-TCTCACAA  1094
       |||||||||||||  |||||| ||||||| |||   |||| ||||||||
seq2  TCACTGCTATGAGCCTGAGAGCCAAGGAGGTAAGGAGTAGATTCTCACAA  1095

seq1  TAGGGAAAGAAAGAGGCATGTGTG  1118
      |||   |||  |||||||||||||
seq2  TAG---AAGGCAGAGGCATGTGTG  1116