BAC Information

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BAC

Clone NameB6Ng01-346B01
Chromosome11 (Build37)
Map Location 96,617,303 - 96,634,483
singlet/doubletdoublet
Overlap geneSkap1, Snx11
Upstream geneZfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775
Downstream geneCbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346B01.bB6Ng01-346B01.g
ACCGA128073GA128074
length1,066361
definitionB6Ng01-346B01.b B6Ng01-346B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,633,431 - 96,634,483)(96,617,303 - 96,617,663)
sequence
gaattcttacgtggactataagatattcctccatgtgagtcaagctttag
tgatggtgtcagctgcagggctgtgggctgtgctgaggtcaaaaatggtt
tgtgggtgttcccgacagaagatttacaagaaagagtggggagaggacta
gcttgaggggacacagaatggcttccaggtgcctggtggcatcttggtct
gggacccagtagcctgataatccgtccccttagggtggcggtggtgaact
catgagggactaaggcttttccggatttctcccctagacgaacagcaagg
cttttaccgccaagacgtcctgtgtgcggcggcgctaccgtgagtttgtg
tggctgaggaagcagctgcagaggaacgccggcttggtgtgagtttgctc
tcgggccttctcaggtctgaatggatctgggggatcacaggggagctagg
gttacgagggagaagaacttagagcgtggcaggctgaggagcttgagaaa
tgctcgcactcaggtggttatgtcagtgaaaggaaaccagcaagtctccc
tccgttcatgccacgtgacctagcaaaactgtataaacggggggaaaagt
gaatacatacatactcccctcctcccacaaagcaattaaagtgaaaaaaa
aaacagttctgtgtgctttataacagaagttgagaatgtttaacagtatc
ctgccacagctcatctcagttttagaaaactctggggctggagtactctt
ttggtttagtttagtttagctttgttttctgagatagagctggtggtatt
tagctccagcctggccctcaaatgccccagaattctcgcccgaagccaac
agagtagctgagatggatagcaccgtgggcagttgtgtcctgacttggag
tagttctaatccttaggaacggaccagcattctgcagcttactttggtgg
agctgatgctggggacgtggatgtccgtcaaagggttgctgtcaagcact
agctgagatcagatcctttagcacccacgtagaagcccgggaatcccagt
gcttggagagagagac
aaggcaccctgggctgcagatcaagacccacaatatatagagacgtaact
tttaagtaataaagcatatgcattaagctgctgggcagtggtggcacacg
cctttgatcccagcacttggaaggcagaggcagacggatttctgagttcg
aggccagcctggtctacagagtgagttctaggacagccagggctacacag
agaaaccctgtctcgggaaaaaaaaaaaaaaaaagttttatgagcaagaa
caccatgctttggtaggttgttttggtttggtttttgctttgtttttttt
ttgttttttttgtttgtttttgtttgttttttgattgtgtgtgtgtgtgt
gtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96633431_96634483
seq2: B6Ng01-346B01.b_48_1113 (reverse)

seq1  GTCTCTCTCTC--AGCACTGGGA-TCACGGGCTTTCTACGTGGGTGCT-A  46
      |||||||||||  |||||||||| || ||||| ||||||||||||||| |
seq2  GTCTCTCTCTCCAAGCACTGGGATTCCCGGGC-TTCTACGTGGGTGCTAA  49

seq1  AGGATCTGATCTCAGCTCGTGCTTTACAGCAACCCTTTGACGGACATCCA  96
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  AGGATCTGATCTCAGCTAGTGCTTGACAGCAACCCTTTGACGGACATCCA  99

seq1  CGTCCCCAGCATCAGCTCCA-CACAGTGAGCTGCAG-ATGCTGGGTCCGT  144
      |||||||||||||||||||| || ||| |||||||| ||||| |||||||
seq2  CGTCCCCAGCATCAGCTCCACCAAAGTAAGCTGCAGAATGCT-GGTCCGT  148

seq1  TCCTATGAATTAGAACTACTCCAAGTCA-GACAC-ACTG-CCAC-GTGCT  190
      ||||| | |||||||||||||||||||| ||||| |||| |||| |||||
seq2  TCCTAAGGATTAGAACTACTCCAAGTCAGGACACAACTGCCCACGGTGCT  198

seq1  AT-CATCTCAGCTACTCTGTGGGC-TCGGGCGAGAA-TCTGGGGCATTTG  237
      || ||||||||||||||||| ||| ||||||||||| |||||||||||||
seq2  ATCCATCTCAGCTACTCTGTTGGCTTCGGGCGAGAATTCTGGGGCATTTG  248

seq1  A-GGCCAGGCTGGAGCTAAATA-CACCAGCTCTATCTCAGAAAACAAAGC  285
      | |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGGCCAGGCTGGAGCTAAATACCACCAGCTCTATCTCAGAAAACAAAGC  298

seq1  TAAACTAAACTAAACCAAAAGAGTACTCCAGCCCCAGAGTTTTCTAAAAC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAAACTAAACCAAAAGAGTACTCCAGCCCCAGAGTTTTCTAAAAC  348

seq1  TGAGATGAGCTGTGGCAGGATACTGTTAAACATTCTCAACTTCTGTTATA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGAGCTGTGGCAGGATACTGTTAAACATTCTCAACTTCTGTTATA  398

seq1  AAGCACACAGAACTGTTTTTTTTTTCACTTTAATTGCTTTGTGGGAGGAG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACAGAACTGTTTTTTTTTTCACTTTAATTGCTTTGTGGGAGGAG  448

seq1  GGGAGTATGTATGTATTCACTTTTCCCCCCGTTTATACAGTTTTGCTAGG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTATGTATGTATTCACTTTTCCCCCCGTTTATACAGTTTTGCTAGG  498

seq1  TCACGTGGCATGAACGGAGGGAGACTTGCTGGTTTCCTTTCACTGACATA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGGCATGAACGGAGGGAGACTTGCTGGTTTCCTTTCACTGACATA  548

seq1  ACCACCTGAGTGCGAGCATTTCTCAAGCTCCTCAGCCTGCCACGCTCTAA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGAGTGCGAGCATTTCTCAAGCTCCTCAGCCTGCCACGCTCTAA  598

seq1  GTTCTTCTCCCTCGTAACCCTAGCTCCCCTGTGATCCCCCAGATCCATTC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTCCCTCGTAACCCTAGCTCCCCTGTGATCCCCCAGATCCATTC  648

seq1  AGACCTGAGAAGGCCCGAGAGCAAACTCACACCAAGCCGGCGTTCCTCTG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGAGAAGGCCCGAGAGCAAACTCACACCAAGCCGGCGTTCCTCTG  698

seq1  CAGCTGCTTCCTCAGCCACACAAACTCACGGTAGCGCCGCCGCACACAGG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTTCCTCAGCCACACAAACTCACGGTAGCGCCGCCGCACACAGG  748

seq1  ACGTCTTGGCGGTAAAAGCCTTGCTGTTCGTCTAGGGGAGAAATCCGGAA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTTGGCGGTAAAAGCCTTGCTGTTCGTCTAGGGGAGAAATCCGGAA  798

seq1  AAGCCTTAGTCCCTCATGAGTTCACCACCGCCACCCTAAGGGGACGGATT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTAGTCCCTCATGAGTTCACCACCGCCACCCTAAGGGGACGGATT  848

seq1  ATCAGGCTACTGGGTCCCAGACCAAGATGCCACCAGGCACCTGGAAGCCA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCTACTGGGTCCCAGACCAAGATGCCACCAGGCACCTGGAAGCCA  898

seq1  TTCTGTGTCCCCTCAAGCTAGTCCTCTCCCCACTCTTTCTTGTAAATCTT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTCCCCTCAAGCTAGTCCTCTCCCCACTCTTTCTTGTAAATCTT  948

seq1  CTGTCGGGAACACCCACAAACCATTTTTGACCTCAGCACAGCCCACAGCC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGGGAACACCCACAAACCATTTTTGACCTCAGCACAGCCCACAGCC  998

seq1  CTGCAGCTGACACCATCACTAAAGCTTGACTCACATGGAGGAATATCTTA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTGACACCATCACTAAAGCTTGACTCACATGGAGGAATATCTTA  1048

seq1  TAGTCCACGTAAGAATTC  1053
      ||||||||||||||||||
seq2  TAGTCCACGTAAGAATTC  1066

seq1: chr11_96617303_96617663
seq2: B6Ng01-346B01.g_70_430

seq1  AAGGCACCCTGGGCTGCAGATCAAGACCCACAATATATAGAGACGTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACCCTGGGCTGCAGATCAAGACCCACAATATATAGAGACGTAACT  50

seq1  TTTAAGTAATAAAGCATATGCATTAAGCTGCTGGGCAGTGGTGGCACACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTAATAAAGCATATGCATTAAGCTGCTGGGCAGTGGTGGCACACG  100

seq1  CCTTTGATCCCAGCACTTGGAAGGCAGAGGCAGACGGATTTCTGAGTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGATCCCAGCACTTGGAAGGCAGAGGCAGACGGATTTCTGAGTTCG  150

seq1  AGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGGCTACACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGGCTACACAG  200

seq1  AGAAACCCTGTCTCGGGAAAAAAAAAAAAAAAAAGTTTTATGAGCAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGTCTCGGGAAAAAAAAAAAAAAAAAGTTTTATGAGCAAGAA  250

seq1  CACCATGCTTTGGTAGGTTGTTTTGGTTTGGTTTTTGCTTTGTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCTTTGGTAGGTTGTTTTGGTTTGGTTTTTGCTTTGTTTTTTTT  300

seq1  TTGTTTTTTTTGTTTGTTTTTGTTTGTTTTTTGATTGTGTGTGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTTGTTTGTTTTTGTTTGTTTTTTGATTGTGTGTGTGTGTGT  350

seq1  GTGTGTGTGTG  361
      |||||||||||
seq2  GTGTGTGTGTG  361