BAC Information

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BAC

Clone NameB6Ng01-346F07
Chromosome11 (Build37)
Map Location 102,828,442 - 102,967,058
singlet/doubletdoublet
Overlap geneDcakd, Nmt1, Plcd3, Acbd4
Upstream geneDusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1
Downstream geneHexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346F07.bB6Ng01-346F07.g
ACCGA128258GA128259
length1,161607
definitionB6Ng01-346F07.b B6Ng01-346F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,828,442 - 102,829,604)(102,966,452 - 102,967,058)
sequence
gaattcagtctttgtacccacgactctttcttgtgcctattttacagaag
acaaaggctctaggaggtagaattattactgaagtcactcattgctaaat
ggcagagccttgggggattattactgtgtgccatctcacccatctcagac
aatggtggcgatactacctcctcctcctcctcttcctcctcttctttctt
cttttttacaacaaagtcttactatgtagccccaacaggacagagattca
ccatgtagaccaggttggccttgaactcacagagatctacctgcttctgc
cttcttagtgcttggattaaagttatgctctaccacgcccgcccaccctc
ttttaaagacgtcttctcatgacccacaggctgatctcaaactggccaga
caaggatggccttgggctccaactcctcctgcttctacctcccgagtcct
gggattacagcgagcaccaccaggctcagctggacattgctgttagctgg
agagtgggactcgcaggaaccagggaggcaatgaaactgaacccgtgccc
aggatgacagaaggaaatgggcttgtccagaatcacataggaaattgtca
tgagtatgcttagaagtgacaccaaagcaattactcatcttctgggtctt
ggtcaccttagggacgcctatggttggggctgtcagagtaaggggtggtg
gaacagacaaggcacacctctcagaaagtgagtgtggggctagaggggtc
tgacgttcctggttgaagaacaacacatctggagaggcgcactctctctg
ccaggagctgcagccatagcttccttctggattgagtgcttttaccaatt
catcagggacagagcagggacagagtagggaacagagccatacatgcagg
tgtaacaatgggagatgaattaggccagcactggaaagttagaggtaaga
gacagcatgtgtcttctcagttcattctcagtgatgcctttgagccctga
ctccacatcgtctgggtctctcatctcaggcctgtctccctgggccatct
tcccatcagacacctttgtctctcactccttcccagcaaaggttcacact
ctaaaggcaagccctgtttcttgaaagccaagtctatggcttctttctca
cagtgggggct
gaattccaaatggcaggcagagagaaagagcaacttcccagtgccatata
cccgtctacaagtcgcctggcttcgctgagggtgcagaggccagcgatct
caggaagtgccagcactggaattttgctccaggcaggcatttggctgctg
ggtagccctcccgggctgctctccagcggccccattcgactttaaccttt
gtcctgactgggagcccagggaaagcctagggtcctaagaacgaggtcag
ggtaggaagctctcacccttctccccagtggactcggggctgctcctggt
ggtcagctctctgccagctgcttccttctgctctgcccaaacctgctgag
ctgaggagtcccagatcccaggggggaggtggcacaactcgggctcagca
gcaacgggggacaagacaggcagtctcaccaactctggctctagctgttc
cacggagtcacagaaaacctccaggtccaggtctctgggtggccgggact
ctggaagagagaaaaggaaaggaaggcttgtaggaaggacagctgcactt
ggggctggcggggcaggggggggggcactccctgcctttgggaggagggg
ggagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102828442_102829604
seq2: B6Ng01-346F07.b_46_1206

seq1  GAATTCAGTCTTTGTACCCACGACTCTTTCTTGTGCCTATTTTACAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTTTGTACCCACGACTCTTTCTTGTGCCTATTTTACAGAAG  50

seq1  ACAAAGGCTCTAGGAGGTAGAATTATTACTGAAGTCACTCATTGCTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGCTCTAGGAGGTAGAATTATTACTGAAGTCACTCATTGCTAAAT  100

seq1  GGCAGAGCCTTGGGGGATTATTACTGTGTGCCATCTCACCCATCTCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCCTTGGGGGATTATTACTGTGTGCCATCTCACCCATCTCAGAC  150

seq1  AATGGTGGCGATACTACCTCCTCCTCCTCCTCTTCCTCCTCTTCTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGGCGATACTACCTCCTCCTCCTCCTCTTCCTCCTCTTCTTTCTT  200

seq1  CTTTTTTACAACAAAGTCTTACTATGTAGCCCCAACAGGACAGAGATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTACAACAAAGTCTTACTATGTAGCCCCAACAGGACAGAGATTCA  250

seq1  CCATGTAGACCAGGTTGGCCTTGAACTCACAGAGATCTACCTGCTTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAGACCAGGTTGGCCTTGAACTCACAGAGATCTACCTGCTTCTGC  300

seq1  CTTCTTAGTGCTTGGATTAAAGTTATGCTCTACCACGCCCGCCCACCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGTGCTTGGATTAAAGTTATGCTCTACCACGCCCGCCCACCCTC  350

seq1  TTTTAAAGACGTCTTCTCATGACCCACAGGCTGATCTCAAACTGGCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGACGTCTTCTCATGACCCACAGGCTGATCTCAAACTGGCCAGA  400

seq1  CAAGGATGGCCTTGGGCTCCAACTCCTCCTGCTTCTACCTCCCGAGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATGGCCTTGGGCTCCAACTCCTCCTGCTTCTACCTCCCGAGTCCT  450

seq1  GGGATTACAGCGAGCACCACCAGGCTCAGCTGGACATTGCTGTTAGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTACAGCGAGCACCACCAGGCTCAGCTGGACATTGCTGTTAGCTGG  500

seq1  AGAGTGGGACTCGCAGGAACCAGGGAGGCAATGAAACTGAACCCGTGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGGACTCGCAGGAACCAGGGAGGCAATGAAACTGAACCCGTGCCC  550

seq1  AGGATGACAGAAGGAAATGGGCTTGTCCAGAATCACATAGGAAATTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGACAGAAGGAAATGGGCTTGTCCAGAATCACATAGGAAATTGTCA  600

seq1  TGAGTATGCTTAGAAGTGACACCAAAGCAATTACTCATCTTCTGGGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATGCTTAGAAGTGACACCAAAGCAATTACTCATCTTCTGGGTCTT  650

seq1  GGTCACCTTAGGGACGCCTATGGTTGGGGCTGTCAGAGTAAGGGGTGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCTTAGGGACGCCTATGGTTGGGGCTGTCAGAGTAAGGGGTGGTG  700

seq1  GAACAGACAAGGCACACCTCTCAGAAAGTGAGTGTGGGGCTAGAGGGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACAAGGCACACCTCTCAGAAAGTGAGTGTGGGGCTAGAGGGGTC  750

seq1  TGACGTTCCTGGTTGAAGAACAACACATCTGGAGAGGCGCACTCTCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTTCCTGGTTGAAGAACAACACATCTGGAGAGGCGCACTCTCTCTG  800

seq1  CCAGGAGCTGCAGCCATAGCTTCCTTCTGGATTGAGTGCTTTTACCAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCTGCAGCCATAGCTTCCTTCTGGATTGAGTGCTTTTACCAATT  850

seq1  CATCAGGGACAGAGCAGGGGACAGAGTAGGGAACAGAGCCATACATGCAG  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CATCAGGGACAGAGCA-GGGACAGAGTAGGGAACAGAGCCATACATGCAG  899

seq1  GTGTAACAATGGGAGATGAATTAGGCCAGCACTGGAAAGTTAGAGGTAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACAATGGGAGATGAATTAGGCCAGCACTGGAAAGTTAGAGGTAAG  949

seq1  AAGACAGCATGTGTCTTCTCAGTTCA-TCTCAGTGATGCCTTTGAGCCCT  999
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -AGACAGCATGTGTCTTCTCAGTTCATTCTCAGTGATGCCTTTGAGCCCT  998

seq1  GACCTCCACATTCCGTCT-GGTCTCTCATCTCAGGCCTGGTCTCCCT-GG  1047
      || ||||||||  ||||| ||||||||||||||||||| |||||||| ||
seq2  GA-CTCCACAT--CGTCTGGGTCTCTCATCTCAGGCCT-GTCTCCCTGGG  1044

seq1  CCATC-TCCCATCAGGACACC-TTGTCTCTCACCTCCTTCCCAAGCAAAG  1095
      ||||| |||||||| |||||| |||||||||| ||||||||| |||||||
seq2  CCATCTTCCCATCA-GACACCTTTGTCTCTCA-CTCCTTCCC-AGCAAAG  1091

seq1  G-TCACACTCTAAGGGCAGGCACTGGTTCCTGGAAGCAAAGTCTAT-GCC  1143
      | ||||||||||| |||| || ||| ||| || |||| |||||||| || 
seq2  GTTCACACTCTAAAGGCAAGCCCTGTTTCTTGAAAGCCAAGTCTATGGCT  1141

seq1  TCCTTCTCACAGTGGGGGCT  1163
      || |||||||||||||||||
seq2  TCTTTCTCACAGTGGGGGCT  1161

seq1: chr11_102966452_102967058
seq2: B6Ng01-346F07.g_68_674 (reverse)

seq1  ACTCTCCCCCCTCCTCCCAAAGGCAGGGAGTGCCCCCCCCCCTGCCCCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCCCCCTCCTCCCAAAGGCAGGGAGTGCCCCCCCCCCTGCCCCGC  50

seq1  CAGCCCCAAGTGCAGCTGTCCTTCCTACAAGCCTTCCTTTCCTTTTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAAGTGCAGCTGTCCTTCCTACAAGCCTTCCTTTCCTTTTCTCT  100

seq1  CTTCCAGAGTCCCGGCCACCCAGAGACCTGGACCTGGAGGTTTTCTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAGTCCCGGCCACCCAGAGACCTGGACCTGGAGGTTTTCTGTGA  150

seq1  CTCCGTGGAACAGCTAGAGCCAGAGTTGGTGAGACTGCCTGTCTTGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTGGAACAGCTAGAGCCAGAGTTGGTGAGACTGCCTGTCTTGTCCC  200

seq1  CCGTTGCTGCTGAGCCCGAGTTGTGCCACCTCCCCCCTGGGATCTGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGCTGCTGAGCCCGAGTTGTGCCACCTCCCCCCTGGGATCTGGGAC  250

seq1  TCCTCAGCTCAGCAGGTTTGGGCAGAGCAGAAGGAAGCAGCTGGCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCTCAGCAGGTTTGGGCAGAGCAGAAGGAAGCAGCTGGCAGAGA  300

seq1  GCTGACCACCAGGAGCAGCCCCGAGTCCACTGGGGAGAAGGGTGAGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCACCAGGAGCAGCCCCGAGTCCACTGGGGAGAAGGGTGAGAGCT  350

seq1  TCCTACCCTGACCTCGTTCTTAGGACCCTAGGCTTTCCCTGGGCTCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCCTGACCTCGTTCTTAGGACCCTAGGCTTTCCCTGGGCTCCCAG  400

seq1  TCAGGACAAAGGTTAAAGTCGAATGGGGCCGCTGGAGAGCAGCCCGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACAAAGGTTAAAGTCGAATGGGGCCGCTGGAGAGCAGCCCGGGAG  450

seq1  GGCTACCCAGCAGCCAAATGCCTGCCTGGAGCAAAATTCCAGTGCTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCCAGCAGCCAAATGCCTGCCTGGAGCAAAATTCCAGTGCTGGCA  500

seq1  CTTCCTGAGATCGCTGGCCTCTGCACCCTCAGCGAAGCCAGGCGACTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAGATCGCTGGCCTCTGCACCCTCAGCGAAGCCAGGCGACTTGT  550

seq1  AGACGGGTATATGGCACTGGGAAGTTGCTCTTTCTCTCTGCCTGCCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGGTATATGGCACTGGGAAGTTGCTCTTTCTCTCTGCCTGCCATTT  600

seq1  GGAATTC  607
      |||||||
seq2  GGAATTC  607