BAC Information

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BAC

Clone NameB6Ng01-346F16
Chromosome11 (Build37)
Map Location 48,826,508 - 48,827,608
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219
Downstream gene9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346F16.bB6Ng01-346F16.g
ACCGA128275GA128276
length1,1031,217
definitionB6Ng01-346F16.b B6Ng01-346F16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgttgtttggacaaaagccgtaataccaactcttccaaagatt
tccaggctgcaagactgccctgtagatactgtgtttgctaagtctcacaa
ctgggaggataaatgaaagacagaagcagggggagaagtaaggacagaag
aggggagaagaatgaagaggaagaagaagaaaagcaagcggaataggaag
agaggaaagaggaagagaaaggagaagtaagttgaggaagagattatagg
ctcttatgttaagcacgtggtgttgagcaggagttgtgattttaagatgt
tgttgagcctttaccatatcacaggaaatgacaatttaattagagcctgt
gttgcctacatcccaaattccaaactcatccttttgactggtgaaggctg
tggaatacaatgtctgtgtctgcacagatctccaggtgtgtttacttatc
catgctttcctcagctcttcctggagggagcatggacaatggtcatcatt
ccatgtgttgtgtgcctactatgtctaaggccataccacctaatgtggag
atgtgtgctgggaacgtgacccctgtacttcccaaacccccaacgaagtt
caagagaggattgtgtcaattagctcttgtgcatggtgtcaaagcatcat
ctatccacaaagagctgaatggcgcatagagaggcaggaaaaatgggtga
gacaactggcagagaaaaaggagctctgggaaagagtgaggctgaagcga
ttcaccaccaggttgtggaggaagctgtgtgagaagaggcaaccagccac
atttcagacagaatcggataaacaggttaatttagttataagcgagttgg
agaacaagctgagctaaggtataggcattaattcatgaataaacaacctc
tgtgtcattattcttcaaactgatgcagctacagaaaaacaccaatgggt
tacacagtctgctaacttcttcatcttagagagtgtggccactgtttggg
gaatcttcttgggacaaggatctcagtttaattagacgagtatttaaggt
ccggacatcacaaccataatattttcataaatggtaactttattatttat
tta
gaattcagataggtacctgttccactgtaatactgttgaggtctgggaat
caccacacaaacgactcagacattgatcttagttaaacatggctggctta
ttgaatgcacaccccatgactgattgatcagggccacagaccagacttgg
gagctgactgtggccctaaatgattctcagggccagtttatatggcaaaa
gctaaaatgagctcatgtacaggtacaagaagcactgcccagtggtctac
tctgactcaagctatttgggctagctagacagaacaggtctacctgacct
tttctctggttggtcctatgtggagattattgttgtggaatttcttaaga
ttaaaaacctcagaacataacaggatatgtggtcaatttaaccccactct
gaatcaggctatttttctgtgttagtaactgactagcaggaataggcttt
gatttttcaaaccctactctatttggggttattacctaccaaccaggagt
aggggagaaagaaggttaatagaaaaaggaggttgtggaggtgtttataa
gtaattccgtgaggtgattccactctttgttgtcaggataacagcagtcc
agtccaatagcaaacaccaaacatgaatcagcatgtggtagcacaatcca
acaggaacagcaaggctcctctgaatcagcatgagtcagcagaaatggcc
agaatcagtcagaataccttgagatgttctttggcacagttctttctatg
aagtgaagaacagcgaagaccagtcaaaaccagaaaagcattgcatggca
tagcaacacaagagtatcctctcactgtctgtggggttctatttatatcc
tttctaaacatcacacaccccctctcaagtgtcttttttcagcaaaacat
tgcatgccctctcacaagacagcttccataaaaacatctcgtgacacaac
tgagtttttaaaggaaccagaaattcccacttctagtgagcatagacaaa
atggctacagctatgccaggggcgtagcttccacataccttccttccatg
gctagcatgcaaagactctaccttcaaatggatctaaacatcatgtagag
tttgttaatgaacataggagtgcatgcctgatataagagttcttcggctc
taggatcgaattgtttccaagacagggaatttaatctctgtgatgtcata
aaggcattttggccgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_48826508_48827608
seq2: B6Ng01-346F16.b_47_1149

seq1  GAATTCTTGTTGTTTGGACAAAAGCCGTAATACCAACTCTTCCAAAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTGTTTGGACAAAAGCCGTAATACCAACTCTTCCAAAGATT  50

seq1  TCCAGGCTGCAAGACTGCCCTGTAGATACTGTGTTTGCTAAGTCTCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTGCAAGACTGCCCTGTAGATACTGTGTTTGCTAAGTCTCACAA  100

seq1  CTGGGAGGATAAATGAAAGACAGAAGCAGGGGGAGAAGTAAGGACAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGATAAATGAAAGACAGAAGCAGGGGGAGAAGTAAGGACAGAAG  150

seq1  AGGGGAGAAGAATGAAGAGGAAGAAGAAGAAAAGCAAGCGGAATAGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAAGAATGAAGAGGAAGAAGAAGAAAAGCAAGCGGAATAGGAAG  200

seq1  AGAGGAAAGAGGAAGAGAAAGGAGAAGTAAGTTGAGGAAGAGATTATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAGAGGAAGAGAAAGGAGAAGTAAGTTGAGGAAGAGATTATAGG  250

seq1  CTCTTATGTTAAGCACGTGGTGTTGAGCAGGAGTTGTGATTTTAAGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATGTTAAGCACGTGGTGTTGAGCAGGAGTTGTGATTTTAAGATGT  300

seq1  TGTTGAGCCTTTACCATATCACAGGAAATGACAATTTAATTAGAGCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGCCTTTACCATATCACAGGAAATGACAATTTAATTAGAGCCTGT  350

seq1  GTTGCCTACATCCCAAATTCCAAACTCATCCTTTTGACTGGTGAAGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTACATCCCAAATTCCAAACTCATCCTTTTGACTGGTGAAGGCTG  400

seq1  TGGAATACAATGTCTGTGTCTGCACAGATCTCCAGGTGTGTTTACTTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATACAATGTCTGTGTCTGCACAGATCTCCAGGTGTGTTTACTTATC  450

seq1  CATGCTTTCCTCAGCTCTTCCTGGAGGGAGCATGGACAATGGTCATCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTTCCTCAGCTCTTCCTGGAGGGAGCATGGACAATGGTCATCATT  500

seq1  CCATGTGTTGTGTGCCTACTATGTCTAAGGCCATACCACCTAATGTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTTGTGTGCCTACTATGTCTAAGGCCATACCACCTAATGTGGAG  550

seq1  ATGTGTGCTGGGAACGTGACCCCTGTACTTCCCAAACCCCCAACGAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCTGGGAACGTGACCCCTGTACTTCCCAAACCCCCAACGAAGTT  600

seq1  CAAGAGAGGATTGTGTCAATTAGCTCTTGTGCATGGTGTCAAAGCATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGGATTGTGTCAATTAGCTCTTGTGCATGGTGTCAAAGCATCAT  650

seq1  CTATCCACAAAGAGCTGAATGGCGCATAGAGAGGCAGGAAAAATGGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCACAAAGAGCTGAATGGCGCATAGAGAGGCAGGAAAAATGGGTGA  700

seq1  GACAACTGGCAGAGAAAAAGGAGCTCTGGGAAAGAGTGAGGCTGAAGCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTGGCAGAGAAAAAGGAGCTCTGGGAAAGAGTGAGGCTGAAGCGA  750

seq1  TTCACCACCAGGTTGTGGAGGAAGCTGTGTGAGAAGAGGCAACCAGCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCACCAGGTTGTGGAGGAAGCTGTGTGAGAAGAGGCAACCAGCCAC  800

seq1  ATTTCAGACAGAATCGGATAAACAGGTTAATTTAGTTATAAGCGAGTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGACAGAATCGGATAAACAGGTTAATTTAGTTATAAGCGAGTTGG  850

seq1  AGAACAAGCTGAGCTAAGGTATAGGCATTAATTCATGAATAAACAACCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAGCTGAGCTAAGGTATAGGCATTAATTCATGAATAAACAACCTC  900

seq1  TGTGTCATTATTC-TCAAACTGATGCAGCTACAGAAAAACACCAAT-GGT  948
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  TGTGTCATTATTCTTCAAACTGATGCAGCTACAGAAAAACACCAATGGGT  950

seq1  TACACAGTCTGCTAACTTCTTCATCTTAGAAGAGTGTGG-CACTGTTTGG  997
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  TACACAGTCTGCTAACTTCTTCATCTTAG-AGAGTGTGGCCACTGTTTGG  999

seq1  GGAATCTTCTTGGGACAAAAGATCTCAGTTTAATTAGACGAAGTATTTAA  1047
      |||||||||||||||| || |||||||||||||||||||| |||||||||
seq2  GGAATCTTCTTGGGAC-AAGGATCTCAGTTTAATTAGACG-AGTATTTAA  1047

seq1  AGT-CAGACATACACAACCAT-ATATTTTCAT-AATGGT-ACTTTATTTA  1093
       || | ||||| ||||||||| |||||||||| |||||| |||||| |||
seq2  GGTCCGGACAT-CACAACCATAATATTTTCATAAATGGTAACTTTA-TTA  1095

seq1  TTTATTTA  1101
      ||||||||
seq2  TTTATTTA  1103