BAC Information

Click to search

BAC

Clone NameB6Ng01-346I10
Chromosome11 (Build37)
Map Location 25,923,056 - 26,082,482
singlet/doubletdoublet
Overlap gene5730522E02Rik, LOC100042328
Upstream genenone
Downstream geneLOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346I10.bB6Ng01-346I10.g
ACCGA128398GA128399
length1,1221,095
definitionB6Ng01-346I10.b B6Ng01-346I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,081,340 - 26,082,482)(25,923,056 - 25,924,153)
sequence
gaattcaaagccaacctcatttacatagtacgttccaggtcagcactggc
tatagagtaagactgtctcactataaacaatagtaaaaccaaaacaaatt
tactgaacaggccaccctagttcataaaatcatatttttatcttactctc
ttgcaaacctgtgaaagccctctttagatctatgtagattatgtaaaaat
atatactatatatttgtatatatattatgtatatatatcatatattatat
ataaatataatgtatatgttttaattatactatataatataaattatata
tagtatattatatatatgataacatttttacaaaagttagctgtatagac
ttgaaagtccttgcacctactaactaattcagttaatactaatctaccat
gatggattcataatgctcttttattctttggactgatgtcatttattttc
aactcaatttttagcctcattatatttctattcattcttccttggttttt
caatgagtgaatggcatttaaaatcaattatgcattctttttcagatgtt
ttcttgtgttgtcataactatacgattaaactgaatagcaaaaattagat
tcagtttaaaatgactgcaatctatggctacaataagtttttaattcata
ctggaatgagtatatttcatcaactgttttacaagttccatacattcttt
tatgtcacatattttagacaaattaggcataatgataagtatgttacaag
ctttcttgaagttgatatagagatgtttggagacttcccattcattttct
aatatcaaattgtcatgcacttcttaaacttgggagaactttaattgttc
aagccatggaagaaatgtaatgctgaagaaattattcttttcttttcctt
ttctaacttctgtagaaattaagcaccaaaaaaaaaaaaaaactttgtta
actatatatgccagagctttaaaatacacaaagccagtaaaataaagcag
tgggctgagcagtaattcagccaactacgtgtgtatattaagcataaagt
taccacatatgtacaaatactatgcagcccattgttcacactgacaattg
cctgactctacagagcatgagc

gaattccttagttgagtcttaggtatagaagctgcatttgggatagcact
tggccctactaggaaatgtcttctatttccccaatgggaggaggtactaa
tacgatttgagattctagaaccaagaaaaaatggaaggaggctaattttc
ctttgttcgtttgtttgtttatcagcttgaagggcaaagtgagaaactta
cctacagctgctttgtctacacttagagcttgagggctaagtgagtcctg
ctctccaggcattgctgtaaataatacctacattcctgccccaaaaccat
taacatcctactctcttccatcaggtgaaaccttaatcacccattgtcaa
ctgctccacttactataaaaacctcccacattctccatatttttttctat
tcaatatttaagatttacatttggctaaatgcagatatcttaagagggcc
atataatatgtttagataaatgaacattccatgtattcccaatgagattt
ttaaagaccctaatcaagatatagaccactcctgtcactcagaaaggttc
tcctgcatcctactcaatcaccatccacccatgtttgagtttgttcttta
aaaaaaaaaaaagatttatttattcattatatgtaagtacactgtagctg
tcctcagacactcaagagagagtcagatctgattacggatggttgtgagc
caccatgtggttgctgggatttaaactcagtacctttggaggagcagtcc
gtgctcttaaccactaagccatctctccagcccctttgagtttgttcttt
aattgctggtaatggcatcatggatgctcacttaccatagtttctgaact
ttatcagggtccgtgtacgtcataattccttttctttgtagttcttgagc
atcatttcgctatatgaatatctctaaatgatgacctcattgttgacatc
tgatttgaatttagtctgggccgtttatgactgacactgctacaaataag
ctttttattatgggtgccattttttattgtcttggtaatataacggtggt
atggctagaaaagaacggtacatgttcatcttttgtagcagctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26081340_26082482
seq2: B6Ng01-346I10.b_44_1165 (reverse)

seq1  GCTCATGGCTCCTGTAGGAGTCAGGCATTTGTCAGTTGTGACACAAATGG  50
      |||||| ||| ||||| |||||||||| ||||||| ||||| || |||||
seq2  GCTCAT-GCT-CTGTA-GAGTCAGGCAATTGTCAG-TGTGA-AC-AATGG  44

seq1  GCCTGCATAGTATTTTGTACATATGGTGTTAACTTTTATGCTTTAATATA  100
      | |||||||||| ||||||||||| ||| |||| ||||||| ||||||||
seq2  G-CTGCATAGTA-TTTGTACATAT-GTGGTAAC-TTTATGC-TTAATATA  89

seq1  CACACGTAGTTGGCTGAATTTTACTTGCTCCAGGCCCCACTGCTTTATTT  150
      ||||||||||||||||||  |||| |||| |||  |||||||||||||||
seq2  CACACGTAGTTGGCTGAA--TTAC-TGCT-CAG--CCCACTGCTTTATTT  133

seq1  TACTGGCTTTTGTGTATTTTAAAGCTCTGGCATAATATAGTTAACAAAGT  200
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  TACTGGC-TTTGTGTATTTTAAAGCTCTGGCAT-ATATAGTTAACAAAGT  181

seq1  TTTTTTTTTTTTTTTGGTTGCTTAATTTCTACAGAAGTTAGAAAAGGAAA  250
      ||||||||||||||  | ||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTT--GGTGCTTAATTTCTACAGAAGTTAGAAAAGGAAA  229

seq1  AGAAAAGAATAATTTCTTCAGCATTACATTTCTTCCATGGCTTGAACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAATAATTTCTTCAGCATTACATTTCTTCCATGGCTTGAACAAT  279

seq1  TAAAGTTCTCCCAAGTTTAAGAAGTGCATGACAATTTGATATTAGAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTCTCCCAAGTTTAAGAAGTGCATGACAATTTGATATTAGAAAAT  329

seq1  GAATGGGAAGTCTCCAAACATCTCTATATCAACTTCAAGAAAGCTTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGAAGTCTCCAAACATCTCTATATCAACTTCAAGAAAGCTTGTAA  379

seq1  CATACTTATCATTATGCCTAATTTGTCTAAAATATGTGACATAAAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTATCATTATGCCTAATTTGTCTAAAATATGTGACATAAAAGAAT  429

seq1  GTATGGAACTTGTAAAACAGTTGATGAAATATACTCATTCCAGTATGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAACTTGTAAAACAGTTGATGAAATATACTCATTCCAGTATGAAT  479

seq1  TAAAAACTTATTGTAGCCATAGATTGCAGTCATTTTAAACTGAATCTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTTATTGTAGCCATAGATTGCAGTCATTTTAAACTGAATCTAAT  529

seq1  TTTTGCTATTCAGTTTAATCGTATAGTTATGACAACACAAGAAAACATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTATTCAGTTTAATCGTATAGTTATGACAACACAAGAAAACATCT  579

seq1  GAAAAAGAATGCATAATTGATTTTAAATGCCATTCACTCATTGAAAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAATGCATAATTGATTTTAAATGCCATTCACTCATTGAAAAACC  629

seq1  AAGGAAGAATGAATAGAAATATAATGAGGCTAAAAATTGAGTTGAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAATGAATAGAAATATAATGAGGCTAAAAATTGAGTTGAAAATA  679

seq1  AATGACATCAGTCCAAAGAATAAAAGAGCATTATGAATCCATCATGGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATCAGTCCAAAGAATAAAAGAGCATTATGAATCCATCATGGTAG  729

seq1  ATTAGTATTAACTGAATTAGTTAGTAGGTGCAAGGACTTTCAAGTCTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATTAACTGAATTAGTTAGTAGGTGCAAGGACTTTCAAGTCTATA  779

seq1  CAGCTAACTTTTGTAAAAATGTTATCATATATATAATATACTATATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAACTTTTGTAAAAATGTTATCATATATATAATATACTATATATAA  829

seq1  TTTATATTATATAGTATAATTAAAACATATACATTATATTTATATATAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTATATAGTATAATTAAAACATATACATTATATTTATATATAAT  879

seq1  ATATGATATATATACATAATATATATACAAATATATAGTATATATTTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATATATATACATAATATATATACAAATATATAGTATATATTTTTA  929

seq1  CATAATCTACATAGATCTAAAGAGGGCTTTCACAGGTTTGCAAGAGAGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCTACATAGATCTAAAGAGGGCTTTCACAGGTTTGCAAGAGAGTA  979

seq1  AGATAAAAATATGATTTTATGAACTAGGGTGGCCTGTTCAGTAAATTTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAATATGATTTTATGAACTAGGGTGGCCTGTTCAGTAAATTTGT  1029

seq1  TTTGGTTTTACTATTGTTTATAGTGAGACAGTCTTACTCTATAGCCAGTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTACTATTGTTTATAGTGAGACAGTCTTACTCTATAGCCAGTG  1079

seq1  CTGACCTGGAACGTACTATGTAAATGAGGTTGGCTTTGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTGGAACGTACTATGTAAATGAGGTTGGCTTTGAATTC  1122


seq1: chr11_25923056_25924153
seq2: B6Ng01-346I10.g_68_1162

seq1  GAATTCCTTAGTTGAGTCTTAGGTATAGAAGCTGCATTTGGGATAGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTTGAGTCTTAGGTATAGAAGCTGCATTTGGGATAGCACT  50

seq1  TGGCCCTACTAGGAAATGTCTTCTATTTCCCCAATGGGAGGAGGTACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTACTAGGAAATGTCTTCTATTTCCCCAATGGGAGGAGGTACTAA  100

seq1  TACGATTTGAGATTCTAGAACCAAGAAAAAATGGAAGGAGGCTAATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATTTGAGATTCTAGAACCAAGAAAAAATGGAAGGAGGCTAATTTTC  150

seq1  CTTTGTTCGTTTGTTTGTTTATCAGCTTGAAGGGCAAAGTGAGAAACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCGTTTGTTTGTTTATCAGCTTGAAGGGCAAAGTGAGAAACTTA  200

seq1  CCTACAGCTGCTTTGTCTACACTTAGAGCTTGAGGGCTAAGTGAGTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGCTGCTTTGTCTACACTTAGAGCTTGAGGGCTAAGTGAGTCCTG  250

seq1  CTCTCCAGGCATTGCTGTAAATAATACCTACATTCCTGCCCCAAAACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGGCATTGCTGTAAATAATACCTACATTCCTGCCCCAAAACCAT  300

seq1  TAACATCCTACTCTCTTCCATCAGGTGAAACCTTAATCACCCATTGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCCTACTCTCTTCCATCAGGTGAAACCTTAATCACCCATTGTCAA  350

seq1  CTGCTCCACTTACTATAAAAACCTCCCACATTCTCCATATTTTTTTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCACTTACTATAAAAACCTCCCACATTCTCCATATTTTTTTCTAT  400

seq1  TCAATATTTAAGATTTACATTTGGCTAAATGCAGATATCTTAAGAGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTTAAGATTTACATTTGGCTAAATGCAGATATCTTAAGAGGGCC  450

seq1  ATATAATATGTTTAGATAAATGAACATTCCATGTATTCCCAATGAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATATGTTTAGATAAATGAACATTCCATGTATTCCCAATGAGATTT  500

seq1  TTAAAGACCCTAATCAAGATATAGACCACTCCTGTCACTCAGAAAGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACCCTAATCAAGATATAGACCACTCCTGTCACTCAGAAAGGTTC  550

seq1  TCCTGCATCCTACTCAATCACCATCCACCCATGTTTGAGTTTGTTCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATCCTACTCAATCACCATCCACCCATGTTTGAGTTTGTTCTTTA  600

seq1  AAAAAAAAAAAAGATTTATTTATTCATTATATGTAAGTACACTGTAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGATTTATTTATTCATTATATGTAAGTACACTGTAGCTG  650

seq1  TCCTCAGACACTCAAGAGAGAGTCAGATCTGATTACGGATGGTTGTGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGACACTCAAGAGAGAGTCAGATCTGATTACGGATGGTTGTGAGC  700

seq1  CACCATGTGGTTGCTGGGATTTAAACTCAGTACCTTTGGAGGAGCAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTGGTTGCTGGGATTTAAACTCAGTACCTTTGGAGGAGCAGTCC  750

seq1  GTGCTCTTAACCACTAAGCCATCTCTCCAGCCCCTTTGAGTTTGTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTAACCACTAAGCCATCTCTCCAGCCCCTTTGAGTTTGTTCTTT  800

seq1  AATTGCTGGTAATGGCATCATGGATGCTCACTTACCATAGTTTCTGAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGGTAATGGCATCATGGATGCTCACTTACCATAGTTTCTGAACT  850

seq1  TTATCAGGGTCCGTGTACGTCAT-ATTCCTTTTCTTTGTAGTTC-TGAGC  898
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  TTATCAGGGTCCGTGTACGTCATAATTCCTTTTCTTTGTAGTTCTTGAGC  900

seq1  ATCATTTCGCTATATGAATATCTCTAAATGATGACCTCATTGTTGAACAT  948
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCATTTCGCTATATGAATATCTCTAAATGATGACCTCATTGTTG-ACAT  949

seq1  CTGAATTGAATTTAGTCTGGGCCGTTTATGACTGACACTGCTACAAATAA  998
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTGAATTTAGTCTGGGCCGTTTATGACTGACACTGCTACAAATAA  999

seq1  GGCTTTTATTATGGGTGCCATTTTTTA-TGTCTTGGGTAAATATTAAGGG  1047
      |  |||||||||||||||||||||||| ||||||||   |||| ||| ||
seq2  GCTTTTTATTATGGGTGCCATTTTTTATTGTCTTGG--TAATA-TAACGG  1046

seq1  TGGTATGGCTAGGAAAAGAACGGGTACATGTTCATCTTTGTAAGCAGCTC  1097
      ||||||||||| ||||||||| |||||||||||||||||   ||||||||
seq2  TGGTATGGCTA-GAAAAGAAC-GGTACATGTTCATCTTTTGTAGCAGCTC  1094

seq1  C  1098
      |
seq2  C  1095


| Home | SequenceCutter | Blast | Download |