BAC Information

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BAC

Clone NameB6Ng01-347B12
Chromosome11 (Build37)
Map Location 36,051,476 - 36,116,787
singlet/doubletdoublet
Overlap geneOdz2
Upstream geneSlit3, LOC100039006, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347B12.bB6Ng01-347B12.g
ACCGA128803GA128804
length1,201976
definitionB6Ng01-347B12.b B6Ng01-347B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,051,476 - 36,052,528)(36,115,824 - 36,116,787)
sequence
gaattcactggtcttaccacattccccatcatcctgaagcagctgggctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggcagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaacggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccataactc
taggttctgctggcttagaagttttggctccagagaggggagtgctccta
ccaggagctacaacaaacatttcattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggcacttcagggaagactctaaagagctagtgagcttcc
tctaccatgtaagtagtgctagaaggtaatctatgagcccgaaagtgggg
gcctttccagaccccaaaagtgtgttagtacctgagtagtggacttctca
gtctcttgaactgaaacaaattttagttacatagaatctggtatattatt
atagccatttgagagccccagagaaactttacataaaaggactttgtgct
aatttctgttccaatgcctcagtccctggatttccagaaaaggggcttaa
tttgtcaagttttgcttttaaataatctaggcaagaactttaattggact
tattctggccacacgattggctgttccttgggttaatcaccatggcgggg
cagatactatctactctccttggatttagcatcgtaccttacctaagagt
gtgttaaacagaagtgtgaccaccaaggaacgttgtgagccacagcaaat
aaaatagggttcatgttagatactaatatctcaaacaatatttgggacat
actcctattaaaaaaaaccattttgtgtttatctggatgacgtttactgg
acatcctgttttaatacagccaccctgtcgctcgcagtcagagtgagcag
ctcaggctctgcttgttattcagaacacaagctccctacaggtctggagc
gcatacggagaaccccgtccatgctagcgttcctctagtcttctcaatgg
a

gaattccacccactcttcacacagatggacaatgagtgaagaccacacag
ctgggttgaacagacagggagtttgggaactcattcagggaattacactt
ctcatttggctctttgttcttgcagagagtgtgtggtcctgagtgcgggg
tggggatgggagctgggggcagaggaagatagaaagttggggttaggagc
gggagtgtggattctcccttgcacagtgactcacctcaccctccccaggc
aagcctcttaattgcctaactaacagggaataatgacaccacctggatga
gagctgaggggaggggaaggcattaaccctgtgtgaggggcttggagaga
gcctctgagagatcattattacatcactttgccccttacccacctctccc
tgctaataggagacagacaaatgctaaataactatgtaatcatacatttc
tagtcaggcaacaatgccagcatatgtaatagcctgagacagctatgaaa
ctccaccgaagatgtatttaaagtgtcactgctgcctaatgtaaaacatg
aattacaggttcatttggaggacacgatttaaaatctatacaaccgtact
gtggcatttcccaatgggttttagctttagttgtcttttctctgaacatt
taaaaaaaaaaaatccccaagtaatttcaacccagagacactaacttcaa
ggaacaggttttctctattctttactttcgcttctgtttttcattggtag
cgatggctccaaacctactatcttttatgacatgttgttcttttccctcg
ggaatgcttctcccggcttcacggggaaccccagaacgtagattacacct
ttttggagatgttagcctggctctcataaggagacaagtagttgaaatct
gtgtcaaaatggctttgtttaaatgacttgagccagcttctttaaaccag
gacggcaggggctgggggaattttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_36051476_36052528
seq2: B6Ng01-347B12.b_202_1245

seq1  TCAGCGCTCGATATATGGTACAGTTTCACCCATAGCCAGGATTCATGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGCTCGATATATGGTACAGTTTCACCCATAGCCAGGATTCATGGGT  50

seq1  CCAGGAATCAAGGGGTGGAAAACGGAATAGTTCCACTTACTATCACTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATCAAGGGGTGGAAAACGGAATAGTTCCACTTACTATCACTCCT  100

seq1  AGTGACCCTCTAGGAAAATTTTTGCTTCCTGTCCCCATAACTCTAGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCCTCTAGGAAAATTTTTGCTTCCTGTCCCCATAACTCTAGGTTC  150

seq1  TGCTGGCTTAGAAGTTTTGGCTCCAGAGAGGGGAGTGCTCCTACCAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTTAGAAGTTTTGGCTCCAGAGAGGGGAGTGCTCCTACCAGGAG  200

seq1  CTACAACAAACATTTCATTGAACTGGAAGCTCAGACTTCCCCCTGGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACAAACATTTCATTGAACTGGAAGCTCAGACTTCCCCCTGGTCAT  250

seq1  TTTGGGCTTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCTTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACAGT  300

seq1  GTTAGGCACTTCAGGGAAGACTCTAAAGAGCTAGTGAGCTTCCTCTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCACTTCAGGGAAGACTCTAAAGAGCTAGTGAGCTTCCTCTACCA  350

seq1  TGTAAGTAGTGCTAGAAGGTAATCTATGAGCCCGAAAGTGGGGGCCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTAGTGCTAGAAGGTAATCTATGAGCCCGAAAGTGGGGGCCTTTC  400

seq1  CAGACCCCAAAAGTGTGTTAGTACCTGAGTAGTGGACTTCTCAGTCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCCAAAAGTGTGTTAGTACCTGAGTAGTGGACTTCTCAGTCTCTT  450

seq1  GAACTGAAACAAATTTTAGTTACATAGAATCTGGTATATTATTATAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAACAAATTTTAGTTACATAGAATCTGGTATATTATTATAGCCA  500

seq1  TTTGAGAGCCCCAGAGAAACTTTACATAAAAGGACTTTGTGCTAATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGCCCCAGAGAAACTTTACATAAAAGGACTTTGTGCTAATTTCT  550

seq1  GTTCCAATGCCTCAGTCCCTGGATTTCCAGAAAAGGGGCTTAATTTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAATGCCTCAGTCCCTGGATTTCCAGAAAAGGGGCTTAATTTGTCA  600

seq1  AGTTTTGCTTTTAAATAATCTAGGCAAGAACTTTAATTGGACTTATTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGCTTTTAAATAATCTAGGCAAGAACTTTAATTGGACTTATTCTG  650

seq1  GCCACACGATTGGCTGTTCCTTGGGTTAATCACCATGGCGGGGCAGATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACGATTGGCTGTTCCTTGGGTTAATCACCATGGCGGGGCAGATAC  700

seq1  TATCTACTCTCCTTGGATTTAGCATCGTACCTTACCTAAGAGTGTGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACTCTCCTTGGATTTAGCATCGTACCTTACCTAAGAGTGTGTTAA  750

seq1  ACAGAAGTGTGACCACCAAGGAACGTTGTGAGCCACAGCAAATAAAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTGTGACCACCAAGGAACGTTGTGAGCCACAGCAAATAAAATAG  800

seq1  GGTTCATGTTAGATACTAATATCTCAAACAATATTTGGGACATACTCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGTTAGATACTAATATCTCAAACAATATTTGGGACATACTCCTA  850

seq1  TTAAAAAAAAACCATTTTGTTGTTTATCTGGAATTGACGTTTAACTGGAC  900
      || |||||||||||||||| ||||||||||||  |||||||| |||||||
seq2  TT-AAAAAAAACCATTTTG-TGTTTATCTGGA--TGACGTTT-ACTGGAC  895

seq1  ATCCTGTTTTTAATACAGCCACCCTGTCGCCTCGCAAGTCAGAGTGAGCA  950
      |||||| |||||||||||||||||||||| ||||| ||||||||||||||
seq2  ATCCTG-TTTTAATACAGCCACCCTGTCG-CTCGC-AGTCAGAGTGAGCA  942

seq1  GCTCAGCCTCTGCCTGT--ATCAG-ACAC-AGCTCTCTTACAAGTCTGAA  996
      |||||| |||||| |||   |||| |||| ||||| | |||| ||||| |
seq2  GCTCAGGCTCTGCTTGTTATTCAGAACACAAGCTC-CCTACAGGTCTGGA  991

seq1  GCGCATACGGAGAACCCCGTCCATGCTAAGCGTCCCTCTAAGTTCCTTCT  1046
      ||||||||||||||||||||||||||| ||||| ||||| |||  |||||
seq2  GCGCATACGGAGAACCCCGTCCATGCT-AGCGTTCCTCT-AGT--CTTCT  1037

seq1  CCATGGA  1053
      | |||||
seq2  CAATGGA  1044


seq1: chr11_36115824_36116787
seq2: B6Ng01-347B12.g_66_1041 (reverse)

seq1  TGAAAAT--CCCCAGCCCCTGCCGTCCTGGCTTTAAGAAGCTGGCTCAAG  48
      |||||||  ||||||||||||||||||||| || ||||||||||||||||
seq2  TGAAAATTCCCCCAGCCCCTGCCGTCCTGGTTTAAAGAAGCTGGCTCAAG  50

seq1  TCATTTAAACAA--GCAATTTGACACAGATTTCAACTACTTGTCTCCTTA  96
      ||||||||||||   || ||||||||||||||||||||||||||||||||
seq2  TCATTTAAACAAAGCCATTTTGACACAGATTTCAACTACTTGTCTCCTTA  100

seq1  TGTG-GCCAGGCT-ACATCTCC-AAAAGGTGTAATCTACGTTCTGGGGTT  143
      || | |||||||| |||||||| |||||||||||||||||||||||||||
seq2  TGAGAGCCAGGCTAACATCTCCAAAAAGGTGTAATCTACGTTCTGGGGTT  150

seq1  -CCCGTGAAGCCGGGAGAAGCATT-CCGAGGGAAA--GACAACATGTCAT  189
       ||||||||||||||||||||||| ||||||||||   ||||||||||||
seq2  CCCCGTGAAGCCGGGAGAAGCATTCCCGAGGGAAAAGAACAACATGTCAT  200

seq1  AAAAGATAGTAGGTTTGGAGCCATCGCTACCAATG-AAAACAGAAGCGAA  238
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAAGATAGTAGGTTTGGAGCCATCGCTACCAATGAAAAACAGAAGCGAA  250

seq1  AGTAAAGAATAGAGAAAACCTGTTCCTTGAAGTTAGTGTCTCTGGGTTGA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAATAGAGAAAACCTGTTCCTTGAAGTTAGTGTCTCTGGGTTGA  300

seq1  AATTACTTGGGGATTTTTTTTTTTTAAATGTTCAGAGAAAAGACAACTAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTGGGGATTTTTTTTTTTTAAATGTTCAGAGAAAAGACAACTAA  350

seq1  AGCTAAAACCCATTGGGAAATGCCACAGTACGGTTGTATAGATTTTAAAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAACCCATTGGGAAATGCCACAGTACGGTTGTATAGATTTTAAAT  400

seq1  CGTGTCCTCCAAATGAACCTGTAATTCATGTTTTACATTAGGCAGCAGTG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCTCCAAATGAACCTGTAATTCATGTTTTACATTAGGCAGCAGTG  450

seq1  ACACTTTAAATACATCTTCGGTGGAGTTTCATAGCTGTCTCAGGCTATTA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTAAATACATCTTCGGTGGAGTTTCATAGCTGTCTCAGGCTATTA  500

seq1  CATATGCTGGCATTGTTGCCTGACTAGAAATGTATGATTACATAGTTATT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCTGGCATTGTTGCCTGACTAGAAATGTATGATTACATAGTTATT  550

seq1  TAGCATTTGTCTGTCTCCTATTAGCAGGGAGAGGTGGGTAAGGGGCAAAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTTGTCTGTCTCCTATTAGCAGGGAGAGGTGGGTAAGGGGCAAAG  600

seq1  TGATGTAATAATGATCTCTCAGAGGCTCTCTCCAAGCCCCTCACACAGGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAATAATGATCTCTCAGAGGCTCTCTCCAAGCCCCTCACACAGGG  650

seq1  TTAATGCCTTCCCCTCCCCTCAGCTCTCATCCAGGTGGTGTCATTATTCC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCCTTCCCCTCCCCTCAGCTCTCATCCAGGTGGTGTCATTATTCC  700

seq1  CTGTTAGTTAGGCAATTAAGAGGCTTGCCTGGGGAGGGTGAGGTGAGTCA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGTTAGGCAATTAAGAGGCTTGCCTGGGGAGGGTGAGGTGAGTCA  750

seq1  CTGTGCAAGGGAGAATCCACACTCCCGCTCCTAACCCCAACTTTCTATCT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAAGGGAGAATCCACACTCCCGCTCCTAACCCCAACTTTCTATCT  800

seq1  TCCTCTGCCCCCAGCTCCCATCCCCACCCCGCACTCAGGACCACACACTC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCCCCCAGCTCCCATCCCCACCCCGCACTCAGGACCACACACTC  850

seq1  TCTGCAAGAACAAAGAGCCAAATGAGAAGTGTAATTCCCTGAATGAGTTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGAACAAAGAGCCAAATGAGAAGTGTAATTCCCTGAATGAGTTC  900

seq1  CCAAACTCCCTGTCTGTTCAACCCAGCTGTGTGGTCTTCACTCATTGTCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTCCCTGTCTGTTCAACCCAGCTGTGTGGTCTTCACTCATTGTCC  950

seq1  ATCTGTGTGAAGAGTGGGTGGAATTC  964
      ||||||||||||||||||||||||||
seq2  ATCTGTGTGAAGAGTGGGTGGAATTC  976


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