BAC Information

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BAC

Clone NameB6Ng01-347E04
Chromosome11 (Build37)
Map Location 62,248,067 - 62,367,646
singlet/doubletdoublet
Overlap geneNcor1, Pigl, Prr6, Ubb
Upstream geneZfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19
Downstream geneTrpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347E04.bB6Ng01-347E04.g
ACCGA128917GA128918
length1,2321,078
definitionB6Ng01-347E04.b B6Ng01-347E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,365,728 - 62,367,646)(62,248,067 - 62,249,149)
sequence
gaattcaatgtagactagggtagtcctgcttctgcttccccccagtgctg
acactaagggcctgtttttttagtgcagtcctgggattgaatgctggaat
ttcttttactctacaaacctgtatctccagatgaaaaagtaccagctaca
aatgcattttaaaaatcttaggccgggcgtggtggcgcacatctttaatc
ccagcactcaggaggcagagtcaggtgaatttctgagttctaggccagcc
tggtctgcaaagtgagttccaggacagccagagctacacagagaaaccct
gaaactcgaaaaaaccaaaaaaccttaggacattaactacaactgaataa
tctggcaagttccagttcttggcgaacctctatgtcttttaaatcacatt
tcaaaatgatagctaaagctgggaaatcatgtgtctcagttgtagaccag
aggcacatagggtccatactgctgaaaattttggggattgaagggacaca
aaccttccaatgacaggtgttcactgtaatagcttttaattttcttttct
attacttaccatttctccaagtaggtggttttcttcctaaagaattatca
caaccagcattaagaaatccaacctgctggtatcttacccaagcaatcat
atgcaaatcagtgtgacctagagaccccccaaaccaccaatttaaaaaag
tacttaaataagcaaagttacaaaggctgtatggcaagccccaccccttc
tgtggcaaactgacattaaggctttgccattaactaaacaaaattgcgat
gtcatacaagtataagctgtaaatgatgcatattttagtcaagaccaatc
tttagttaaatcatgcccaaaataatcagttaagagccccccaccaccca
agccaccacagaatttcacaagtgacaccatatatgcttaccatgcaaca
aaaccttttattaacattttttaacagaggttcagctattattgaaactt
gtatttctaaacttaaattggggcagtggctagagtgcagagtatgccat
cactgcccactgggatgcagacgatattatagccaccccctcagacggag
gaccaggtgcaagatcgactcttttctgatgttgtaatcagagagaggtg
cgccatctttctagctggcttgcgcagattcagccctcgtctgtatcaga
gaatgccctcttttatctcgtggatcttggcc
gaattccaggccaggcaagtctacataactagacctagactttgatctta
tctctttttaaaagtaaaaagggtaggtaggaaggaagaaaagggaaaaa
agcattccagcagtaagttcaaaacaaattagctagcagaaacataagtt
atctctttagatccatgtttatttacaaatgaaaaagctgaaatccataa
aaatcaacttagtttcttccatcacaactaaaaaggttttgtttttgttt
tttaaatgtgtatgggtattctgtttacatgtatatttgtgtaccaggtg
tgcctggtgcccaaagaggccaaaaaagagtgtttatctagccaggcgtg
gtggcgcacgcctttaatcctaacacttgggaggcagaggcaggcagatt
tctgagttcgaggccagcctggtctacaaagtgagttccaggacagccag
gctatacagagaaaccctgtctctaaaataaaaaaaaaaaaaccaaaaaa
aaaacaaaaaaaaaaaacaaaaaacaaaaaaaaaaaaagagtgtttatct
agtgatgttttttttgcttctttttctgctttttaaatattggtggatgg
agggaacaataagagattggtttcaaatcagatatattgggctggagaga
tgggccagcagttaagaacctagagatgcatagaggatctgtacccatgt
tgggctgctcagaagcgccagttactccagctcccaggggatctgatgcc
tctggctctctgcaggtactgtactcacatgcacagacacacagagatac
atgataaataataaattacatccttaaaaataatgctaacgcaatcataa
gcaagtatttaaacacagttactaaaaacacagaatataccaaggtatat
attgaaaggaataaaaaacaggtaactataaataaaagttctaaatatta
aattttcacatattatttataatagccactgaagaaaaaaagaaacactg
ggggctggaagaggtgttcagcagtagagcactgactgctcttcagagaa
tctgagttcatcccagaaacacatggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_62365728_62367646
seq2: B6Ng01-347E04.b_46_1277 (reverse)

seq1  GGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTACAAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATCCAGAAGGAGTCAACCCTGCACCTGGTCCTTCGCCTGAGAGGTGGCAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAG  250
                                                        
seq2  --------------------------------------------------  0

seq1  GGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGA  300
                                                        
seq2  --------------------------------------------------  0

seq1  AGATGGCCGCACCCTCTCTGATTACAACATCCAGAAAGAGTCAACCCTGC  350
                                                        
seq2  --------------------------------------------------  0

seq1  ACCTGGTCCTCCGTCTGAGGGGTGGCATGCAGATCTTCGTGAAGACCCTG  400
                                                        
seq2  --------------------------------------------------  0

seq1  ACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAA  450
                                                        
seq2  --------------------------------------------------  0

seq1  CGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAGA  500
                                                        
seq2  --------------------------------------------------  0

seq1  GGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGAT  550
                                                        
seq2  --------------------------------------------------  0

seq1  TACAACATCCAGAAGGAGTCAACCCTGCACCTGGTCCTTCGCCTGAGAGG  600
                                                        
seq2  --------------------------------------------------  0

seq1  TGGCATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGG  650
                                                        
seq2  --------------------------------------------------  0

seq1  AGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGA-  699
                                        |||||||||||| || 
seq2  ----------------------------------GGCCAAGATCCACGAG  16

seq1  --TAAAGAGGGCATCCCCCCTGA-CCAGCAGA-GGCTGATCTTTGCCGGC  745
         |||||||||||   | ||||  |||  || ||||||  | |||  ||
seq2  ATAAAAGAGGGCAT--TCTCTGATACAGACGAGGGCTGA-ATCTGC--GC  61

seq1  AAG-CAGCTAG-AAGATGGCCGCA-CTCTCTCTGATTACAACATCCAGAA  792
      ||| ||||||| ||||||| |||| ||||||||||||||||||||   ||
seq2  AAGCCAGCTAGAAAGATGG-CGCACCTCTCTCTGATTACAACATCAGAAA  110

seq1  AGAGTCGACCCTGCACCTGGTCCTCCGTCTGA-GGGGTGGCTATTAATTA  841
      |||||||| | ||||||||||||||||||||| |||||||||||  | ||
seq2  AGAGTCGATCTTGCACCTGGTCCTCCGTCTGAGGGGGTGGCTAT--AATA  158

seq1  TTCGGTCTGCATTCCCAGTGGGCAGTGATGGCATTACTCTGCACTCTAGC  891
      |   ||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  T--CGTCTGCA-TCCCAGTGGGCAGTGATGGCA-TACTCTGCACTCTAGC  204

seq1  CACTTGCCCCAATTTAAGTTTAGAAATTACAAGTTTCAATAATAGCTGAA  941
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAC-TGCCCCAATTTAAGTTTAGAAA-TACAAGTTTCAATAATAGCTGAA  252

seq1  CCTCTGTTAAAAAATGTTAAT-AAAGGTTTTGTTGCATGGTAAGCATATA  990
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTCTGTTAAAAAATGTTAATAAAAGGTTTTGTTGCATGGTAAGCATATA  302

seq1  TGGTGTCACTTGTGAAATTCTGTGGTGGCTTGGGTGGT-GGGGGCTCTTA  1039
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGTGTCACTTGTGAAATTCTGTGGTGGCTTGGGTGGTGGGGGGCTCTTA  352

seq1  ACTGATTATTTTGGGCATGATTTAACTAAAGATTGGTCTTGACTAAAATA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTATTTTGGGCATGATTTAACTAAAGATTGGTCTTGACTAAAATA  402

seq1  TGCATCATTTACAGCTTATACTTGTATGACATCGCAATTTTGTTTAGTTA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATTTACAGCTTATACTTGTATGACATCGCAATTTTGTTTAGTTA  452

seq1  ATGGCAAAGCCTTAATGTCAGTTTGCCACAGAAGGGGTGGGGCTTGCCAT  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAAGCCTTAATGTCAGTTTGCCACAGAAGGGGTGGGGCTTGCCAT  502

seq1  ACAGCCTTTGTAACTTTGCTTATTTAAGTACTTTTTTAAATTGGTGGTTT  1239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTTGTAACTTTGCTTATTTAAGTACTTTTTTAAATTGGTGGTTT  552

seq1  GGGGGGTCTCTAGGTCACACTGATTTGCATATGATTGCTTGGGTAAGATA  1289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTCTCTAGGTCACACTGATTTGCATATGATTGCTTGGGTAAGATA  602

seq1  CCAGCAGGTTGGATTTCTTAATGCTGGTTGTGATAATTCTTTAGGAAGAA  1339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGGTTGGATTTCTTAATGCTGGTTGTGATAATTCTTTAGGAAGAA  652

seq1  AACCACCTACTTGGAGAAATGGTAAGTAATAGAAAAGAAAATTAAAAGCT  1389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTACTTGGAGAAATGGTAAGTAATAGAAAAGAAAATTAAAAGCT  702

seq1  ATTACAGTGAACACCTGTCATTGGAAGGTTTGTGTCCCTTCAATCCCCAA  1439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTGAACACCTGTCATTGGAAGGTTTGTGTCCCTTCAATCCCCAA  752

seq1  AATTTTCAGCAGTATGGACCCTATGTGCCTCTGGTCTACAACTGAGACAC  1489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCAGCAGTATGGACCCTATGTGCCTCTGGTCTACAACTGAGACAC  802

seq1  ATGATTTCCCAGCTTTAGCTATCATTTTGAAATGTGATTTAAAAGACATA  1539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCCCAGCTTTAGCTATCATTTTGAAATGTGATTTAAAAGACATA  852

seq1  GAGGTTCGCCAAGAACTGGAACTTGCCAGATTATTCAGTTGTAGTTAATG  1589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCGCCAAGAACTGGAACTTGCCAGATTATTCAGTTGTAGTTAATG  902

seq1  TCCTAAGGTTTTTTGGTTTTTTCGAGTTTCAGGGTTTCTCTGTGTAGCTC  1639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGGTTTTTTGGTTTTTTCGAGTTTCAGGGTTTCTCTGTGTAGCTC  952

seq1  TGGCTGTCCTGGAACTCACTTTGCAGACCAGGCTGGCCTAGAACTCAGAA  1689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTGGAACTCACTTTGCAGACCAGGCTGGCCTAGAACTCAGAA  1002

seq1  ATTCACCTGACTCTGCCTCCTGAGTGCTGGGATTAAAGATGTGCGCCACC  1739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCTGACTCTGCCTCCTGAGTGCTGGGATTAAAGATGTGCGCCACC  1052

seq1  ACGCCCGGCCTAAGATTTTTAAAATGCATTTGTAGCTGGTACTTTTTCAT  1789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCGGCCTAAGATTTTTAAAATGCATTTGTAGCTGGTACTTTTTCAT  1102

seq1  CTGGAGATACAGGTTTGTAGAGTAAAAGAAATTCCAGCATTCAATCCCAG  1839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATACAGGTTTGTAGAGTAAAAGAAATTCCAGCATTCAATCCCAG  1152

seq1  GACTGCACTAAAAAAACAGGCCCTTAGTGTCAGCACTGGGGGGAAGCAGA  1889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCACTAAAAAAACAGGCCCTTAGTGTCAGCACTGGGGGGAAGCAGA  1202

seq1  AGCAGGACTACCCTAGTCTACATTGAATTC  1919
      ||||||||||||||||||||||||||||||
seq2  AGCAGGACTACCCTAGTCTACATTGAATTC  1232

seq1: chr11_62248067_62249149
seq2: B6Ng01-347E04.g_67_1144

seq1  GAATTCCAGGCCAGGCAAGTCTACATAACTAGACCTAGACTTTGATCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGGCAAGTCTACATAACTAGACCTAGACTTTGATCTTA  50

seq1  TCTCTTTTTAAAAGTAAAAAGGGTAGGTAGGAAGGAAGAAAAGGGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTAAAAGTAAAAAGGGTAGGTAGGAAGGAAGAAAAGGGAAAAA  100

seq1  AGCATTCCAGCAGTAAGTTCAAAACAAATTAGCTAGCAGAAACATAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCCAGCAGTAAGTTCAAAACAAATTAGCTAGCAGAAACATAAGTT  150

seq1  ATCTCTTTAGATCCATGTTTATTTACAAATGAAAAAGCTGAAATCCATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTAGATCCATGTTTATTTACAAATGAAAAAGCTGAAATCCATAA  200

seq1  AAATCAACTTAGTTTCTTCCATCACAACTAAAAAGGTTTTGTTTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACTTAGTTTCTTCCATCACAACTAAAAAGGTTTTGTTTTTGTTT  250

seq1  TTTAAATGTGTATGGGTATTCTGTTTACATGTATATTTGTGTACCAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTGTATGGGTATTCTGTTTACATGTATATTTGTGTACCAGGTG  300

seq1  TGCCTGGTGCCCAAAGAGGCCAAAAAAGAGTGTTTATCTAGCCAGGCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTGCCCAAAGAGGCCAAAAAAGAGTGTTTATCTAGCCAGGCGTG  350

seq1  GTGGCGCACGCCTTTAATCCTAACACTTGGGAGGCAGAGGCAGGCAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGCACGCCTTTAATCCTAACACTTGGGAGGCAGAGGCAGGCAGATT  400

seq1  TCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  450

seq1  GCTATACAGAGAAACCCTGTCTCTAAAATAAAAAAAAAAAAACCAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACAGAGAAACCCTGTCTCTAAAATAAAAAAAAAAAAACCAAAAAA  500

seq1  AAAACAAAAAAAAAAAACAAAAAACAAAAAAAAAAAAAGAGTGTTTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAAAAAAAACAAAAAACAAAAAAAAAAAAAGAGTGTTTATCT  550

seq1  AGTGATGTTTTTTTTGCTTCTTTTTCTGCTTTTTAAATATTGGTGGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGTTTTTTTTGCTTCTTTTTCTGCTTTTTAAATATTGGTGGATGG  600

seq1  AGGGAACAATAAGAGATTGGTTTCAAATCAGATATATTGGGCTGGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAATAAGAGATTGGTTTCAAATCAGATATATTGGGCTGGAGAGA  650

seq1  TGGGCCAGCAGTTAAGAACCTAGAGATGCATAGAGGATCTGTACCCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAGCAGTTAAGAACCTAGAGATGCATAGAGGATCTGTACCCATGT  700

seq1  TGGGCTGCTCAGAAGCGCCAGTTACTCCAGCTCCCAGGGGATCTGATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGCTCAGAAGCGCCAGTTACTCCAGCTCCCAGGGGATCTGATGCC  750

seq1  TCTGGCTCTCTGCAGGTACTGTACTCACATGCACAGACACACAGAGATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCTCTGCAGGTACTGTACTCACATGCACAGACACACAGAGATAC  800

seq1  ATGATAAATAATAAATTACATCCTTAAAAATAATGCTAACGCAATCATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAATAATAAATTACATCCTTAAAAATAATGCTAACGCAATCATAA  850

seq1  GCAAGTATTTAAACACAGTTACTAAAAACACAGAATATACCAAGGTATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTATTTAAACACAGTTACTAAAAACACAGAATATACCAAGGTATAT  900

seq1  ATTGAAAGGAATAAAAAACAGGTAACTATAAATAAAAG-TCTAAATA-TA  948
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  ATTGAAAGGAATAAAAAACAGGTAACTATAAATAAAAGTTCTAAATATTA  950

seq1  AATTTTCACATATTATTTATAATAGCCACTGAAGAAAAAAAGAAAACAAC  998
      |||||||||||||||||||||||||||||||||||||||||| |||||  
seq2  AATTTTCACATATTATTTATAATAGCCACTGAAGAAAAAAAG-AAACACT  999

seq1  TGGGGCTGG-AGAGGTGGTTCAGCAGTTAAGAGCACTGACTGCTCTTCCA  1047
       |||||||| |||||| ||||||||||  |||||||||||||||||| ||
seq2  GGGGGCTGGAAGAGGT-GTTCAGCAGT--AGAGCACTGACTGCTCTT-CA  1045

seq1  GAGATCCTGAGTTCAATTCCCAGAAACCACATGGTG  1083
      ||||  |||||||||  ||||||||| |||||||||
seq2  GAGAATCTGAGTTCA--TCCCAGAAA-CACATGGTG  1078