BAC Information

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BAC

Clone NameB6Ng01-347G02
Chromosome11 (Build37)
Map Location 39,670,037 - 39,671,172
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347G02.bB6Ng01-347G02.g
ACCGA128998GA128999
length1,1241,179
definitionB6Ng01-347G02.b B6Ng01-347G02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagggtagagaaaccagccagggtcaagagtagtagaaactccc
actacactactgaacaccttagcacatcctacacaggtaagctcctctgc
ttcagatgtaggcaaacccagctcagcagtgaacatgccattgattttac
aggctcagagcgctctattcagtacccttttctaacactcaaatcctaaa
tccaatcaataccaacattatgtagtaatgtctctgacatttttttttaa
acagagacttttcacactaacaactgcgtgctttcttgaggaataagcat
tgtattgttcctggagtgaatcattaataactaacataatttataccctg
ttactgctattattatagtcaaaaggattttaaactcacctttctcagta
gatggccaagaaattaagaaatatttattcatgtccggtgcacctcatgt
tattccagataatatgtgttattctttttttttttaaactaacaaaataa
atgactacgagtaaggtaaatatattggatacaaacgtttgtttctgtac
atacactcagtagtagaaatgtggaagaatgtaaattaagtgttacttta
gaatattatattttcaactaattttggtagaatctagggaatgcataaat
atctcccaaaaggcttcattctttttaattaaaggtattcaagatttgtg
tctatagcatattttcttacgttctaataaatgctaaattgataatgtgt
aaagcaactagaatctggaggggttatataggaactgttacccagtaaaa
aaattttatctaaattttgaaagattaaaaatgaggggcttgtgccagca
ggaacagggacacaggaaacccacccaacaagcagctggggttccttcca
gtcagagccagccactcaccctagcatcttgggcatgaactcggtagact
atcccaggtccccagaggactctccatgcctcagtgccctagcaaaccca
ggtctttggatcactgagagaccggctcagagaggctctgacactgggac
tcaggaagagcacatcttggatctagtctcttcagagaacagtcaatgca
agagagacgagggtcacagaagca

gaattctcacctgaggaataccgtttggctgagaaacacctgaaaaaaat
gttcagcatccttaaacatcagggaaatgcaaatcaaaacaacgctgaga
ttccatctcacaccagtcagaatggctaagatcaaaaattcaggtgagga
tgctggcgaggatttggagaaagaggaaccctcctccactgttggtggga
ttgcaagcttgtacaaccactctggaaatcagtctggcggtttctcagaa
aattggacatggtactactggaggatcctgtaatacctctcctgggcata
tatccagaagatgtcccaactagtaagaaggaaacatactctactatgtt
catagcagccttatttataatagtcagaagctggaaagaacccagatgcc
cctcaacagaggaatggatacaaaaatgtggtacatctacacaatggagt
accagtcagctattaaaatgaatgaatttttgaaattcctaggcaaatgg
ttggacctggagggcattatcctgagtgaggtcacccaatcacaaaagaa
ctcagatgatatgtactcactgataagtagatattagcccagaaacttag
aatacccaagatataagttacaatttgcaaaacacatgaaactcaagaaa
aacaaaaacctaagtgtggacactttgccccttcttagaattgggaacaa
aacacccatggtaggaggtacagagacaaagtttggagctgagacaaaag
gatggaacatctagagactgccatatccagggatccatcccataatcagc
ctcctaatgctgacaccattgcatacactagcaagattctgctggtagga
ccctgatatagcagtctctagtgagactatgccggggcctagcaaacaca
taagtggatgctcacagttagctattggatggatcacagggccctaatgg
aggagctagagaaaatacccaggagctaaagggatctgcaccctatagtg
gaacacatatgaactacagtaccgagctcttgtctctagctgcatatgta
tcagagatgctagtggcatcactgcaaagagaggcccatgacttgcactt
aattgcccttagtacaggatgcaggctaattgaatgggtggtatgggctg
tccctctctgtgcaatgtatacgtcatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39670037_39671172
seq2: B6Ng01-347G02.b_48_1171

seq1  GAATTCCAGGGTAGAGAAACCAGCCAGGGTCAAGAGTAGTAGAAACTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTAGAGAAACCAGCCAGGGTCAAGAGTAGTAGAAACTCCC  50

seq1  ACTACACTACTGAACACCTTAGCACATCCTACACAGGTAAGCTCCTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACTACTGAACACCTTAGCACATCCTACACAGGTAAGCTCCTCTGC  100

seq1  TTCAGATGTAGGCAAACCCAGCTCAGCAGTGAACATGCCATTGATTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGTAGGCAAACCCAGCTCAGCAGTGAACATGCCATTGATTTTAC  150

seq1  AGGCTCAGAGCGCTCTATTCAGTACCCTTTTCTAACACTCAAATCCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAGAGCGCTCTATTCAGTACCCTTTTCTAACACTCAAATCCTAAA  200

seq1  TCCAATCAATACCAACATTATGTAGTAATGTCTCTGACATTTTTTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCAATACCAACATTATGTAGTAATGTCTCTGACATTTTTTTTTAA  250

seq1  ACAGAGACTTTTCACACTAACAACTGCGTGCTTTCTTGAGGAATAAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACTTTTCACACTAACAACTGCGTGCTTTCTTGAGGAATAAGCAT  300

seq1  TGTATTGTTCCTGGAGTGAATCATTAATAACTAACATAATTTATACCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGTTCCTGGAGTGAATCATTAATAACTAACATAATTTATACCCTG  350

seq1  TTACTGCTATTATTATAGTCAAAAGGATTTTAAACTCACCTTTCTCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTATTATTATAGTCAAAAGGATTTTAAACTCACCTTTCTCAGTA  400

seq1  GATGGCCAAGAAATTAAGAAATATTTATTCATGTCCGGTGCACCTCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCAAGAAATTAAGAAATATTTATTCATGTCCGGTGCACCTCATGT  450

seq1  TATTCCAGATAATATGTGTTATTCTTTTTTTTTTTAAACTAACAAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGATAATATGTGTTATTCTTTTTTTTTTTAAACTAACAAAATAA  500

seq1  ATGACTACGAGTAAGGTAAATATATTGGATACAAACGTTTGTTTCTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTACGAGTAAGGTAAATATATTGGATACAAACGTTTGTTTCTGTAC  550

seq1  ATACACTCAGTAGTAGAAATGTGGAAGAATGTAAATTAAGTGTTACTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTCAGTAGTAGAAATGTGGAAGAATGTAAATTAAGTGTTACTTTA  600

seq1  GAATATTATATTTTCAACTAATTTTGGTAGAATCTAGGGAATGCATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTATATTTTCAACTAATTTTGGTAGAATCTAGGGAATGCATAAAT  650

seq1  ATCTCCCAAAAGGCTTCATTCTTTTTAATTAAAGGTATTCAAGATTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCAAAAGGCTTCATTCTTTTTAATTAAAGGTATTCAAGATTTGTG  700

seq1  TCTATAGCATATTTTCTTACGTTCTAATAAATGCTAAATTGATAATGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGCATATTTTCTTACGTTCTAATAAATGCTAAATTGATAATGTGT  750

seq1  AAAGCAACTAGAATCTGGAGGGGTTATATAGGAACTGTTACCCAGTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACTAGAATCTGGAGGGGTTATATAGGAACTGTTACCCAGTAAAA  800

seq1  AAATTTTATCTAAATTTTGAAAGATTAAAAATGAGGGGCTTGTGCCAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTATCTAAATTTTGAAAGATTAAAAATGAGGGGCTTGTGCCAGCA  850

seq1  GGAACAGGGACACAGGAAACCCACCCAACAAGCAGCTGGGGTTCCTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGGGACACAGGAAACCCACCCAACAAGCAGCTGGGGTTCCTTCCA  900

seq1  GTCAGAGCCAGCCACTCACCCTAGCATCTTGGGCATGAACTCGGTAGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGCCAGCCACTCACCCTAGCATCTTGGGCATGAACTCGGTAGACT  950

seq1  ATCCCAAGGTCCCCAGAGGACTCTCCATGCCTCAGGTGCCCTAGCAAACC  1000
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  ATCCC-AGGTCCCCAGAGGACTCTCCATGCCTCA-GTGCCCTAGCAAACC  998

seq1  CAGGGTCTTTGGATCACTGAGGAGAACCGGCCTCCAGAGAGGGCTCTGAC  1050
      || ||||||||||||||||| ||| ||||||   |||||| |||||||||
seq2  CA-GGTCTTTGGATCACTGA-GAG-ACCGGC--TCAGAGA-GGCTCTGAC  1042

seq1  ACTGGGACTCAGGAGAGAGCACCATCTTGGATCCTAGGTCTC-TCAGAGA  1099
      |||||||||||||| |||||| |||||||||| ||| ||||| |||||||
seq2  ACTGGGACTCAGGA-AGAGCA-CATCTTGGAT-CTA-GTCTCTTCAGAGA  1088

seq1  ACAGTCCATGCAGGAGAGAACGAGGGCCACAGAAGCA  1136
      |||||| ||||| ||||| ||||||| ||||||||||
seq2  ACAGTCAATGCAAGAGAG-ACGAGGGTCACAGAAGCA  1124


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