BAC Information

Click to search

BAC

Clone NameB6Ng01-347G05
Chromosome11 (Build37)
Map Location 106,802,650 - 106,962,794
singlet/doubletdoublet
Overlap geneLOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899
Upstream geneCyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2
Downstream geneNol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347G05.bB6Ng01-347G05.g
ACCGA129003GA129004
length676747
definitionB6Ng01-347G05.b B6Ng01-347G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,962,119 - 106,962,794)(106,802,650 - 106,803,393)
sequence
gaattcaaggccagccaggtcacgggataggtggaattatgtataactct
caggcacttagaactcactgagcacttgaaactgtctgtttcacacggca
ttgtgtttaagagctgagaaggctgacgtcgttacctttggaaattagat
taataagatcattgtcataccaatcataagaactcagtagacttgctcct
ggtcatcttgacagctgctctttgttggacgctgtcctgcattaagacag
gaagatggtggctgcaaagaagatgaagaggcctctggagttgatcagtt
ctggacttgttatgaaaaatggaaagttatgctctgggacaaacgtactc
tgaggatgatcagacaggcaaagcaaagttggttatccttgccaacaagg
gcccagcttggaagcaatctgaaatagaatactatgtcatgttggccaaa
actggtgtccatcacttccacaacagtcataccaaagtgggtaaagcatg
cggaaaatgctgccaagtgtgcacctgccgttgatgcaggtcattctggt
attagaggcatgccggagcggactggggagagtaaaaccgacacttaaag
aaagaaagtaaaaggatgttcttctttcatgaaactttaccagaactcat
aggaaggaagggagggagggcgggaa
gaattctttggttgaaaggacgatttcttttcttttttttttaagattta
tttatttattttgtgtatgtgagtacactgcagctgtagagatggttgtg
agccttcatgtggttgttgggatttgaattttaggacctctgctcactct
ggtcggactcggtagctccgacccaaagattagtttattattataagtaa
gtacactgtagctgtcttcagacacaccagaagagggtgtcagatctcat
tacggatggttgtgagccaccatgtggttgctgggatttgaactcaggac
ctttggaagagtagtcagtgctcttaaccactgagtcatctcgccagccc
ccaaaagggcaatttttaatatgccatttctatgatgacattagagctaa
ataatctctaacatatttaatttacagactgtcacggggctattaaaaat
atcatacaggtgaactactaagaattagaattgtccaacagaggcaggta
gatctctgagtctgagagcaacctgctctagagagtgagttccaggacag
ccagggctacacagagaaaccctggtttgcattaacaagttgcccacata
ctcagttggcctgagtctgctacataaatcctgagttcaaatccccagca
ccccctgaagagtgccagatacaatagcacacagctgtaacagttggggg
tgtttttgaggatgcagggtgttccttgaacttcgggcccaaccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106962119_106962794
seq2: B6Ng01-347G05.b_47_722 (reverse)

seq1  TTCCCTCCCTCCCTCCCTTCCTTCCTATGAGTTCTGGTAAAGTTTCATGA  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGCCCTCCCTCCCTTCCTTCCTATGAGTTCTGGTAAAGTTTCATGA  50

seq1  AAGAAGAACATCCTTTTACTTTCTTTCTTTAAGTGTCGGTTTTACTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAACATCCTTTTACTTTCTTTCTTTAAGTGTCGGTTTTACTCTCC  100

seq1  CCAGTCCGCTCCGGCATGCCTCTAATACCAGAATGACCTGCATCAACGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCGCTCCGGCATGCCTCTAATACCAGAATGACCTGCATCAACGGC  150

seq1  AGGTGCACACTTGGCAGCATTTTCCGCATGCTTTACCCACTTTGGTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCACACTTGGCAGCATTTTCCGCATGCTTTACCCACTTTGGTATGA  200

seq1  CTGTTGTGGAAGTGATGGACACCAGTTTTGGCCAACATGACATAGTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTGGAAGTGATGGACACCAGTTTTGGCCAACATGACATAGTATTC  250

seq1  TATTTCAGATTGCTTCCAAGCTGGGCCCTTGTTGGCAAGGATAACCAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGATTGCTTCCAAGCTGGGCCCTTGTTGGCAAGGATAACCAACT  300

seq1  TTGCTTTGCCTGTCTGATCATCCTCAGAGTACGTTTGTCCCAGAGCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGCCTGTCTGATCATCCTCAGAGTACGTTTGTCCCAGAGCATAA  350

seq1  CTTTCCATTTTTCATAACAAGTCCAGAACTGATCAACTCCAGAGGCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATTTTTCATAACAAGTCCAGAACTGATCAACTCCAGAGGCCTCT  400

seq1  TCATCTTCTTTGCAGCCACCATCTTCCTGTCTTAATGCAGGACAGCGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCTTTGCAGCCACCATCTTCCTGTCTTAATGCAGGACAGCGTCC  450

seq1  AACAAAGAGCAGCTGTCAAGATGACCAGGAGCAAGTCTACTGAGTTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAGCAGCTGTCAAGATGACCAGGAGCAAGTCTACTGAGTTCTTA  500

seq1  TGATTGGTATGACAATGATCTTATTAATCTAATTTCCAAAGGTAACGACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGTATGACAATGATCTTATTAATCTAATTTCCAAAGGTAACGACG  550

seq1  TCAGCCTTCTCAGCTCTTAAACACAATGCCGTGTGAAACAGACAGTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTCTCAGCTCTTAAACACAATGCCGTGTGAAACAGACAGTTTCA  600

seq1  AGTGCTCAGTGAGTTCTAAGTGCCTGAGAGTTATACATAATTCCACCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCAGTGAGTTCTAAGTGCCTGAGAGTTATACATAATTCCACCTAT  650

seq1  CCCGTGACCTGGCTGGCCTTGAATTC  676
      ||||||||||||||||||||||||||
seq2  CCCGTGACCTGGCTGGCCTTGAATTC  676

seq1: chr11_106802650_106803393
seq2: B6Ng01-347G05.g_65_811

seq1  GAATTCTTTGGTTGAAAGGACGATTTCTTTTCTTTTTTTTTTAAGATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGTTGAAAGGACGATTTCTTTTCTTTTTTTTTTAAGATTTA  50

seq1  TTTATTTATTTTGTGTATGTGAGTACACTGCAGCTGTAGAGATGGTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTTGTGTATGTGAGTACACTGCAGCTGTAGAGATGGTTGTG  100

seq1  AGCCTTCATGTGGTTGTTGGGATTTGAATTTTAGGACCTCTGCTCACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCATGTGGTTGTTGGGATTTGAATTTTAGGACCTCTGCTCACTCT  150

seq1  GGTCGGACTCGGTAGCTCCGACCCAAAGATTAGTTTATTATTATAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGACTCGGTAGCTCCGACCCAAAGATTAGTTTATTATTATAAGTAA  200

seq1  GTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGTGTCAGATCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGTGTCAGATCTCAT  250

seq1  TACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGAC  300

seq1  CTTTGGAAGAGTAGTCAGTGCTCTTAACCACTGAGTCATCTCGCCAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAAGAGTAGTCAGTGCTCTTAACCACTGAGTCATCTCGCCAGCCC  350

seq1  CCAAAAGGGCAATTTTTAATATGCCATTTCTATGATGACATTAGAGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGGCAATTTTTAATATGCCATTTCTATGATGACATTAGAGCTAA  400

seq1  ATAATCTCTAACATATTTAATTTACAGACTGTCACGGGGCTATTAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTCTAACATATTTAATTTACAGACTGTCACGGGGCTATTAAAAAT  450

seq1  ATCATACAGGTGAACTACTAAGAATTAGAATTGTCCAACAGAGGCAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACAGGTGAACTACTAAGAATTAGAATTGTCCAACAGAGGCAGGTA  500

seq1  GATCTCTGAGTCTGAGAGCAGCCTGCTCTAGAGAGTGAGTTCCAGGACAG  550
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GATCTCTGAGTCTGAGAGCAACCTGCTCTAGAGAGTGAGTTCCAGGACAG  550

seq1  CCAGGGCTACACAGAGAAACCCTGGTTTGCATTAACAGGTTGCCCACATA  600
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCAGGGCTACACAGAGAAACCCTGGTTTGCATTAACAAGTTGCCCACATA  600

seq1  CTCAGTTGGCCTGAGTCTGCTACATAAATCCTGAGTTCAAATCCCCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTGGCCTGAGTCTGCTACATAAATCCTGAGTTCAAATCCCCAGCA  650

seq1  -CCCCTGTAAAGTGCCAGATACAATAGCACACAGCTGTAACAGTT-GGGG  698
       |||||| | ||||||||||||||||||||||||||||||||||| ||||
seq2  CCCCCTGAAGAGTGCCAGATACAATAGCACACAGCTGTAACAGTTGGGGG  700

seq1  TG-TTTTGAGGATGCAGGGGGTTCCTTGAGCTCACGGGCCAACCATT  744
      || |||||||||||||||| ||||||||| ||   || |||||||||
seq2  TGTTTTTGAGGATGCAGGGTGTTCCTTGAACTTCGGGCCCAACCATT  747