BAC Information

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BAC

Clone NameB6Ng01-347J21
Chromosome11 (Build37)
Map Location 36,730,155 - 36,882,447
singlet/doubletdoublet
Overlap geneOdz2
Upstream geneWwc1, LOC636532
Downstream geneLOC100039148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347J21.bB6Ng01-347J21.g
ACCGA129165GA129166
length1,1121,036
definitionB6Ng01-347J21.b B6Ng01-347J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,881,338 - 36,882,447)(36,730,155 - 36,731,194)
sequence
gaattcagcccactatatttgtagatggtaatatcatatcacgatgtcac
aaggttagataaccttagcaaattgaatatccctgtgttttctgtcccct
gagcttaaatcattttcctctataactttgtgtttttatataaaattcct
gacttaaagtgttttgtatagatctaactaggtagatattccctttccat
ttttctcccctaccagtcctcttcttcctccctcttcccctcttcttctt
cctccaattctcttcaattgttgaggaaatttttggaatctcatctcatg
tagcccagtctggctttgtatttaccatgcagctatatatgaccttaaac
ttgtattcctgtttcaagtcttaagtactgggattatagatgcaggcaca
cagaatgccactttctgtctttctgtctttcttctatactcattttgaaa
attgactcaatcacctcctgctaaatattcttcctttctaggacattgca
tcttcatttttgcttttttctttctttctgataaataaacccttatttcc
attgattaatgttgaatgtagtcctatctgtttgtttatcaatctcttct
ctacgacttgtgtctagaagataaggacttcattttgttttggtaataat
ttgaatgtgtcatgaagtccatggcatagtgtcctactaaagggagagag
gaaggaaatgaataaaaaaaaatcattggtgtttattgatgcatcattga
taatatccaagaaatgtaacaacgttatatctctaccaaaggatgaatgg
taaagaaagtatggcatgcacaaaatggcattttatgcagctgtaaagga
aaattaaatcatgccatatgggaagaaaatgaatagaactggaaattgtc
acaaaactacactgaaactactgtatgccttctcttctatgtgaaatcta
tatttaaagttgtagatatgtgtgaacatatgtgtgtatattaatgtgta
tagggtcataaaactagaaagggattcatgaaagagaaaaattgagatgt
tgggaattgataatttctcatacgaggtagaggaggtattaactattagg
agaaagggaact
gaattcattttattttcaaagatacaaagcccagttaaattttaagtcaa
tgaatggtctggcttaaatctacaatggctccttaaagctcatgaattca
aggatgggttgacagctgataggctttggaggggggacagctggatcagg
agtgctctcatctcattactggatgcatcctttcatagagtcatgattgg
atgacattagtgtgaggtgatacaaactaggagatggcgccttgttggag
gaagtgggtcacctctgatatgcctttaaggagtttctcttgtgcccact
tcttcctatctctctgcttcctgtctccttcactctatagtctctttctg
ttgctaaattaagtcttacctcagatgcaaagcaatagagcctagtggcc
aaagattgaaacctcagaaatcatgggccaaaatgattacaatgaatact
cctgtcttcaaactgtttctctttcacatttgtcaccccaactaaaagcc
tcatcaatacaacacactaagaggttgtgcaggctagaagagaccacact
ggtttggaggaaatccagtatcccgacatggctttttccttcaaacagat
gatgacattggattggtcagttcttcaactacccttggcagttttactta
attaaaaagcaaaagggtgaagttaatttttattgttttccctctggcat
tttccttcttggaattctgaatcattttcacagaaaattctggaagattg
ttaataatttagagaaataaaataaaattggattgtgttttttatccccc
tatgtttgttttctctaggatgtcctagtatcaaaaccagcataataata
agcaatatcatcaatgactttagactttcaaaactgacaagttataaaaa
aaaaatgtgttaaatgatacacagactaaactaaagcgttgctatcctca
gtgacaaagaaaatcgagaatgaaatatctttcatttaataaatgtgtta
acttgaatagtcatagacataaaagtctgactagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_36881338_36882447
seq2: B6Ng01-347J21.b_47_1158 (reverse)

seq1  AGTTCCTTTTCTTCCTATAGTTAATACCTTCTTCTACTTCCTTATGAGAA  50
      |||||| ||||| |  |||||||||||| || ||||| | | ||||||||
seq2  AGTTCCCTTTCTCCTAATAGTTAATACC-TCCTCTACCT-CGTATGAGAA  48

seq1  ATATTCAATTTCCCACATCTC-ATTTTTCTCTTTCATGAATCCCTTTCTA  99
      ||  |||||| || ||||||| ||||||||||||||||||||||||||||
seq2  ATTATCAATTCCCAACATCTCAATTTTTCTCTTTCATGAATCCCTTTCTA  98

seq1  GTTTTATGA-CCTATACACATTAATATACACACATATGTTCACACATATC  148
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGACCCTATACACATTAATATACACACATATGTTCACACATATC  148

seq1  TACAACTTTAAATATAGATTTCACATAGAAGAGAAGGCATACAGTAGTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTTTAAATATAGATTTCACATAGAAGAGAAGGCATACAGTAGTTT  198

seq1  CAGTGTAGTTTTGTGACAATTTCCAGTTCTATTCATTTTCTT-CCATATG  247
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGTGTAGTTTTGTGACAATTTCCAGTTCTATTCATTTTCTTCCCATATG  248

seq1  GCATGATTTAATTTTCCTTTACAGCTGCATAAAATGCCATTTTGTGCATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATTTAATTTTCCTTTACAGCTGCATAAAATGCCATTTTGTGCATG  298

seq1  CCATACTTTCTTTACCATTCATCCTTTGGTAGAGATATAACGTTGTTACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTTTCTTTACCATTCATCCTTTGGTAGAGATATAACGTTGTTACA  348

seq1  TTTCTTGGATATTATCAATGATGCATCAATAAACACCAATGA-TTTTTTT  396
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTCTTGGATATTATCAATGATGCATCAATAAACACCAATGATTTTTTTT  398

seq1  TATTCATTTCCTTCCTCTCTCCCTTTAGTAGGACACTATGCCATGGACTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTTCCTTCCTCTCTCCCTTTAGTAGGACACTATGCCATGGACTT  448

seq1  CATGACACATTCAAATTATTACCAAAACAAAATGAAGTCCTTATCTTCTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACATTCAAATTATTACCAAAACAAAATGAAGTCCTTATCTTCTA  498

seq1  GACACAAGTCGTAGAGAAGAGATTGATAAACAAACAGATAGGACTACATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAGTCGTAGAGAAGAGATTGATAAACAAACAGATAGGACTACATT  548

seq1  CAACATTAATCAATGGAAATAAGGGTTTATTTATCAGAAAGAAAGAAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTAATCAATGGAAATAAGGGTTTATTTATCAGAAAGAAAGAAAAA  598

seq1  AGCAAAAATGAAGATGCAATGTCCTAGAAAGGAAGAATATTTAGCAGGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAATGAAGATGCAATGTCCTAGAAAGGAAGAATATTTAGCAGGAG  648

seq1  GTGATTGAGTCAATTTTCAAAATGAGTATAGAAGAAAGACAGAAAGACAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGAGTCAATTTTCAAAATGAGTATAGAAGAAAGACAGAAAGACAG  698

seq1  AAAGTGGCATTCTGTGTGCCTGCATCTATAATCCCAGTACTTAAGACTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGCATTCTGTGTGCCTGCATCTATAATCCCAGTACTTAAGACTTG  748

seq1  AAACAGGAATACAAGTTTAAGGTCATATATAGCTGCATGGTAAATACAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGAATACAAGTTTAAGGTCATATATAGCTGCATGGTAAATACAAA  798

seq1  GCCAGACTGGGCTACATGAGATGAGATTCCAAAAATTTCCTCAACAATTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACTGGGCTACATGAGATGAGATTCCAAAAATTTCCTCAACAATTG  848

seq1  AAGAGAATTGGAGGAAGAAGAAGAGGGGAAGAGGGAGGAAGAAGAGGACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATTGGAGGAAGAAGAAGAGGGGAAGAGGGAGGAAGAAGAGGACT  898

seq1  GGTAGGGGAGAAAAATGGAAAGGGAATATCTACCTAGTTAGATCTATACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGGAGAAAAATGGAAAGGGAATATCTACCTAGTTAGATCTATACA  948

seq1  AAACACTTTAAGTCAGGAATTTTATATAAAAACACAAAGTTATAGAGGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTTAAGTCAGGAATTTTATATAAAAACACAAAGTTATAGAGGAA  998

seq1  AATGATTTAAGCTCAGGGGACAGAAAACACAGGGATATTCAATTTGCTAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTAAGCTCAGGGGACAGAAAACACAGGGATATTCAATTTGCTAA  1048

seq1  GGTTATCTAACCTTGTGACATCGTGATATGATATTACCATCTACAAATAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCTAACCTTGTGACATCGTGATATGATATTACCATCTACAAATAT  1098

seq1  AGTGGGCTGAATTC  1110
      ||||||||||||||
seq2  AGTGGGCTGAATTC  1112

seq1: chr11_36730155_36731194
seq2: B6Ng01-347J21.g_69_1104

seq1  GAATTCATTTTATTTTCAAAGATACAAAGCCCAGTTAAATTTTAAGTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTATTTTCAAAGATACAAAGCCCAGTTAAATTTTAAGTCAA  50

seq1  TGAATGGTCTGGCTTAAATCTACAATGGCTCCTTAAAGCTCATGAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGTCTGGCTTAAATCTACAATGGCTCCTTAAAGCTCATGAATTCA  100

seq1  AGGATGGGTTGACAGCTGATAGGCTTTGGAGGGGGGACAGCTGGATCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGTTGACAGCTGATAGGCTTTGGAGGGGGGACAGCTGGATCAGG  150

seq1  AGTGCTCTCATCTCATTACTGGATGCATCCTTTCATAGAGTCATGATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCTCATCTCATTACTGGATGCATCCTTTCATAGAGTCATGATTGG  200

seq1  ATGACATTAGTGTGAGGTGATACAAACTAGGAGATGGCGCCTTGTTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTAGTGTGAGGTGATACAAACTAGGAGATGGCGCCTTGTTGGAG  250

seq1  GAAGTGGGTCACCTCTGATATGCCTTTAAGGAGTTTCTCTTGTGCCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGTCACCTCTGATATGCCTTTAAGGAGTTTCTCTTGTGCCCACT  300

seq1  TCTTCCTATCTCTCTGCTTCCTGTCTCCTTCACTCTATAGTCTCTTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTATCTCTCTGCTTCCTGTCTCCTTCACTCTATAGTCTCTTTCTG  350

seq1  TTGCTAAATTAAGTCTTACCTCAGATGCAAAGCAATAGAGCCTAGTGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAATTAAGTCTTACCTCAGATGCAAAGCAATAGAGCCTAGTGGCC  400

seq1  AAAGATTGAAACCTCAGAAATCATGGGCCAAAATGATTACAATGAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGAAACCTCAGAAATCATGGGCCAAAATGATTACAATGAATACT  450

seq1  CCTGTCTTCAAACTGTTTCTCTTTCACATTTGTCACCCCAACTAAAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTCAAACTGTTTCTCTTTCACATTTGTCACCCCAACTAAAAGCC  500

seq1  TCATCAATACAACACACTAAGAGGTTGTGCAGGCTAGAAGAGACCACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAATACAACACACTAAGAGGTTGTGCAGGCTAGAAGAGACCACACT  550

seq1  GGTTTGGAGGAAATCCAGTATCCCGACATGGCTTTTTCCTTCAAACAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGAGGAAATCCAGTATCCCGACATGGCTTTTTCCTTCAAACAGAT  600

seq1  GATGACATTGGATTGGTCAGTTCTTCAACTACCCTTGGCAGTTTTACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATTGGATTGGTCAGTTCTTCAACTACCCTTGGCAGTTTTACTTA  650

seq1  ATTAAAAAGCAAAAGGGTGAAGTTAATTTTTATTGTTTTCCCTCTGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAGCAAAAGGGTGAAGTTAATTTTTATTGTTTTCCCTCTGGCAT  700

seq1  TTTCCTTCTTGGAATTCTGAATCATTTTCACAGAAAATTCTGGAAGATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTTGGAATTCTGAATCATTTTCACAGAAAATTCTGGAAGATTG  750

seq1  TTAATAATTTAGAGAAATAAAATAAAATTGGATTGTGTTTTTTATCCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATTTAGAGAAATAAAATAAAATTGGATTGTGTTTTTTATCCCCC  800

seq1  TATGTT--GTTTCCCTAGGATGTCCTAGTATCAAAACCAGCATAATAATA  848
      ||||||   |||| ||||||||||||||||||||||||||||||||||||
seq2  TATGTTTGTTTTCTCTAGGATGTCCTAGTATCAAAACCAGCATAATAATA  850

seq1  AGCAATATCATCAATGAC-TTAGAC-TTCAAAACTGACAAGTTATAAAAA  896
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  AGCAATATCATCAATGACTTTAGACTTTCAAAACTGACAAGTTATAAAAA  900

seq1  AAAAATGTGTTAAATGATACAACAGACTAAACTAAAGCGTTGCTATCCCC  946
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  AAAAATGTGTTAAATGATAC-ACAGACTAAACTAAAGCGTTGCTATCCTC  949

seq1  AGTGACAAAGAAAATCGAGAAATGAAAATATTCTTTCAATTTAATAAATG  996
      ||||||||||||||||||| |||| ||||| |||||| ||||||||||||
seq2  AGTGACAAAGAAAATCGAG-AATG-AAATA-TCTTTC-ATTTAATAAATG  995

seq1  TGTTAACTTGATTAAGGTCATAGACATAAAAGTCTGACATAGGA  1040
      ||||||||||| ||  |||||||||||||||||||||| |||||
seq2  TGTTAACTTGAATA--GTCATAGACATAAAAGTCTGAC-TAGGA  1036