BAC Information

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BAC

Clone NameB6Ng01-347N24
Chromosome11 (Build37)
Map Location 29,627,201 - 29,628,309
singlet/doubletsinglet
Overlap geneRtn4
Upstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403
Downstream geneC230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347N24.bB6Ng01-347N24.g
ACCGA129345GA129346
length1,1851,178
definitionB6Ng01-347N24.b B6Ng01-347N24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctggcaagatggtgtgagttcttttcccaaagcagggcttatg
tgcagagagtaggctacttctctcagtgtgtctcccatagctggggtctc
tagcatttgcactgacaacttgccatgtctctcttccaccctggctgtgc
cttgacagatgctggctggttgctttcttatactgttgttctaggtttct
gaacctcataatgaatgttactatctttctcttgttaatttccagtgttt
tctcgtgcccacctcacaatgtcggtatttgttgttattttagttcatat
ttgggaaggtaggtgcttgtcttagttaatgttcttttgctgctagagtc
accttgaccacaacaacacttataaaaagaatgcattcagttggggtttg
cttattgtttcagagttagttcattagtatcatgacaggaagtagacaga
cataatgctgtagcagtagctaatctacaggcagcaggcagcaggcagag
acagagacagaaagtcagacagacacacagagagaaagacagacacatag
agaccgatagagacagggacaaagactgggcctggtgggtttttgacacc
tcaaagcctaccccaaatgattatgtcttagggtttctattgctgtgaag
agacaccatggccatgacaactctcaaaaaggaaaaaatttcattggagc
tgcttatttttttcagaggttcagtctattgtcatcatggtgggaagcat
ggcagcatccaagcagacacaatcccgaaaggagctaagaattctacatc
ttgtcccacaggcagcaaaaggagaacaagcttgagcttccaggacatca
aagcccaccccagtgacacacaaagcccaccccagtgacacacaaagccc
accccagtgacacacaaagcccaccccagtgacacacttccctccaacaa
ggctacacctcctaatagtaccactccctgtgagcctgtggggtcatttt
tattcaaccaccacattcactcgtgccacatagtttgtagccataccaca
tgcagaatgcattcagtccacttcaaagttcccatgtctaaacagtctca
actagttaaaagttcaagttcaaggtccttcgaaactatgcatcctacta
agtcaacctgaatcagtcattcacagaccggaata
gaattctagttgctgttttgtggcttctttaggaaattctaaatataaga
tcatattagcaacaaataccttaatttatttttgtccaatcaattcattg
cccaaattctggtcaaaaacttctaggacatatatgggtgtgaagtgtca
aagagaggttacccttgtcttattactaggtttaagtgggaagatgctag
tcttgcagcatgttcactgtgattttgtagattttatttttgatcagttt
gaggctaattctttttttttttcttgctgttttgttgactgtttaccatg
agatgatgttggacctaatcagttttttatgcaactattgtggcgagtgt
gtcttattcctattttgtttttatggtgcatgtgtgggttgttattcata
tgttgcactacctttgcattctcagaacagatcctcctaagctatgctgt
aatctgtttgcattgcaggattttgacttgttaatggtgttatggtgaaa
tcactgttctgtatttatacgggatgtttatctgtacttatcctgatgtc
tttgtctgatttgggtatctgaattgaacaatcttctaaattaactaatg
atataaggctctgatgagttatcagaggcatgtagatatttctttggatt
tttgtatccttttttccccccatggagaatcactgctcttgggcgaattt
aatcttcctaatttaaaaaaaaagtaaaaccaacataaagagtccatatg
aaactaaaatacttttgacaagtatgaaaacagacaactgtttttgctag
aaatttgtgtttttcttctttgcagcttcactgacaaactctttacaaaa
tgggattgaaaatgtattagtgcttgtcacagtgctttggacgatggatt
ctgtcctgtgtgtacttacttaccactgtgtagctgtctcacctcctgcc
tgtacttccctaatggtctcaagagtatctcaacttctgcatttctagga
cttacttcagcttgactaattccatagtgtgtgctttgaagtagtatgtg
ttttcatgtgtatactgttgaactttcatgtatgacttccagagttctta
cattatggacaagatctgactgcatctgataccttataatatcaggcagc
aattgtcttgggtgtatgaagagtgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_29627201_29628309
seq2: B6Ng01-347N24.g_138_1243

seq1  AATTTATTTTTGTCCAATCAATTCATTGCCCAAATTCTGGTCAAAAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTTTGTCCAATCAATTCATTGCCCAAATTCTGGTCAAAAACTT  50

seq1  CTAGGACATATATGGGTGTGAAGTGTCAAAGAGAGGTTACCCTTGTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACATATATGGGTGTGAAGTGTCAAAGAGAGGTTACCCTTGTCTTA  100

seq1  TTACTAGGTTTAAGTGGGAAGATGCTAGTCTTGCAGCATGTTCACTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGGTTTAAGTGGGAAGATGCTAGTCTTGCAGCATGTTCACTGTGA  150

seq1  TTTTGTAGATTTTATTTTTGATCAGTTTGAGGCTAATTCTTTTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGATTTTATTTTTGATCAGTTTGAGGCTAATTCTTTTTTTTTTT  200

seq1  CTTGCTGTTTTGTTGACTGTTTACCATGAGATGATGTTGGACCTAATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTTTTGTTGACTGTTTACCATGAGATGATGTTGGACCTAATCAG  250

seq1  TTTTTTATGCAACTATTGTGGCGAGTGTGTCTTATTCCTATTTTGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATGCAACTATTGTGGCGAGTGTGTCTTATTCCTATTTTGTTTTT  300

seq1  ATGGTGCATGTGTGGGTTGTTATTCATATGTTGCACTACCTTTGCATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCATGTGTGGGTTGTTATTCATATGTTGCACTACCTTTGCATTCT  350

seq1  CAGAACAGATCCTCCTAAGCTATGCTGTAATCTGTTTGCATTGCAGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGATCCTCCTAAGCTATGCTGTAATCTGTTTGCATTGCAGGATT  400

seq1  TTGACTTGTTAATGGTGTTATGGTGAAATCACTGTTCTGTATTTATACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTGTTAATGGTGTTATGGTGAAATCACTGTTCTGTATTTATACGG  450

seq1  GATGTTTATCTGTACTTATCCTGATGTCTTTGTCTGATTTGGGTATCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTATCTGTACTTATCCTGATGTCTTTGTCTGATTTGGGTATCTGA  500

seq1  ATTGAACAATCTTCTAAATTAACTAATGATATAAGGCTCTGATGAGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACAATCTTCTAAATTAACTAATGATATAAGGCTCTGATGAGTTAT  550

seq1  CAGAGGCATGTAGATATTTCTTTGGATTTTTGTATCCTTTTTTCCCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCATGTAGATATTTCTTTGGATTTTTGTATCCTTTTTTCCCCCCA  600

seq1  TGGAGAATCACTGCTCTTGGGCGAATTTAATCTTCCTAATTTAAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATCACTGCTCTTGGGCGAATTTAATCTTCCTAATTTAAAAAAAA  650

seq1  AGTAAAACCAACATAAAGAGTCCATATGAAACTAAAATACTTTTGACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACCAACATAAAGAGTCCATATGAAACTAAAATACTTTTGACAAG  700

seq1  TATGAAAACAGACAACTGTTTTTGCTAGAAATTTGTGTTTTTCTTCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAACAGACAACTGTTTTTGCTAGAAATTTGTGTTTTTCTTCTTTG  750

seq1  CAGCTTCACTGACAAACTCTTTACAAAATGGGATTGAAAATGTATTAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCACTGACAAACTCTTTACAAAATGGGATTGAAAATGTATTAGTG  800

seq1  CTTGTCACAGTGCTTTGGACGATGGATTCTGTCCTGTGTGTACTTACTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCACAGTGCTTTGGACGATGGATTCTGTCCTGTGTGTACTTACTTA  850

seq1  CCACTGTGTAGCTGTCTCACCTCCTGCCTGTACTTCCCTAATGGTCTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGTAGCTGTCTCACCTCCTGCCTGTACTTCCCTAATGGTCTCAA  900

seq1  GAGTATCTCAACTTCTGCATTCCTAGGACTTACTTCAGCTTGACTAA-TC  949
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  GAGTATCTCAACTTCTGCATTTCTAGGACTTACTTCAGCTTGACTAATTC  950

seq1  CATAGTGTGTGCTTTGAGGTAGTCATGTGTTTTCATGTGGTAT-CTG-TG  997
      ||||||||||||||||| ||||| |||||||||||||| |||| ||| ||
seq2  CATAGTGTGTGCTTTGAAGTAGT-ATGTGTTTTCATGT-GTATACTGTTG  998

seq1  AACTTTCATGTATGACTTCCAGAGTTCTTACAATTATTGACAAGATCTGA  1047
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  AACTTTCATGTATGACTTCCAGAGTTCTTAC-ATTATGGACAAGATCTGA  1047

seq1  CTGCATCTGATCATTTATTAAATTATCAGGCAGCATTGTTCTTTGTGTGT  1097
      |||||||||||   ||||   | |||||||||||| |  || ||| ||||
seq2  CTGCATCTGATACCTTAT---AATATCAGGCAGCAATTGTC-TTGGGTGT  1093

seq1  ATG-AGTGTGTAT  1109
      ||| || ||||||
seq2  ATGAAGAGTGTAT  1106