BAC Information

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BAC

Clone NameB6Ng01-347P08
Chromosome11 (Build37)
Map Location 26,886,658 - 27,016,037
singlet/doubletdoublet
Overlap geneLOC100042367
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347P08.bB6Ng01-347P08.g
ACCGA129402GA129403
length1,193779
definitionB6Ng01-347P08.b B6Ng01-347P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,886,658 - 26,887,860)(27,015,265 - 27,016,037)
sequence
gaattcttattgggatagagaaacacccaaagtatttacagtaatttctg
gctttctctttccatcctcataggtttttcttcatctactgaattttact
taccagcagctcacagatcttcaggctgctttccttttggacattgtttg
tatttaagtagtcatgacatgccatgaatactacaagagattactaacaa
acctctgagtatcttatttattgattctaaagcttatgtctatccatatg
ctttagaaagcatcattagaaagcaccaactcggggattaaaacctcatg
ggttcccatccatgctttaagctttcctttcactccatctcacacagctc
tactcttcagcttgcttcagctgtttagctttctctgacatttctcacaa
tctgccacctccatggtttcctcactttgtcttccttatgcccctggaat
tgaacagctcctgtgttcttgtaagctgcccaatgactatttcctgatga
ctaccatggaccatctccacctccttcatgagtcccatcggttcctaggt
tctatgaccatttcttttagataagcaatgcctttgctgtcctctatcta
ccataaattcctctaaccaagaactaattgttgtctttttttcctgcttc
attttaaagcttaatgattccttattatggaataggggtattattaaata
gaattctttataatctaggaagaaataatgctcctgcaaacaagcacaac
catcaccaccacctgacctaataggaagagaaaactctgaccgttgattt
tttcctgagaataacatttctgacttccatcacatggaagtgtctggaaa
gtcacaaacttgttagacagattctttaaatcttgcatattcttatgtgt
accttagttcatatttttttatgatgcacatacaccatgattctaatcat
tctgatagttttggtaatggaaattttagaatgaaactttgtaacataaa
aggtttctcattaactacccacattttctatccctgagttttgtgtcatt
ccatgataatgcacactacttcttttctgctttctaggattggccatctt
gcacctttctctcacccaatctttttgaatctttccctagtctttcttct
tagtcagcagcatgcaactgtttagcttccataaaccttgttc
gaattccagggccaagaagcagaagtgggtgggtaggggagcagggcggg
ggaaggtatagggagcttttgggatagcttttgaaatgtatataaagaaa
atatctaataaaaaataaatttaaaaaaaaaaaagatgtttgtcctgatc
ctggtagcacaagtctttaaccaacatcaagaaaatggcttgactaaatc
attagcctgcaagtgcttttaagtctcagatcctttagcattccatttca
caaaaaatgtcaatgttgctttcagtgtaaaccaacattatagaagtcat
tagattatctgtgaggtatggaaatcacatatatgtatacataaaatatt
acatgtatacatacataaaatgaagtggagatgaaaattagtttatagag
tgtttgactaagaagcatgaagccttaggttctatctcataacagcataa
acagtaaatactgccatccatacatctataatccttacacatggggagtg
gaaaaaggaaaaggagaaacttaaggataactttgcctaatcagttcaaa
accagcctgaactacatgatactatgtttaaaaaaaataaaaataaaaaa
gattgaaaagattatgacatccttgtgtccttttgtctgtcttatcagtg
tgcctaggcatgagttttgacagctctcagaaaaacagatcaacagaagt
cagtgtttctgcttacagtgaagacaaataatataaatttcatttgaact
caaaggtagcatgaaaatgcaaaaaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26886658_26887860
seq2: B6Ng01-347P08.b_48_1240

seq1  GAATTCTTATTGGGATAGAGAAACACCCAAAGTATTTACAGTAATTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTGGGATAGAGAAACACCCAAAGTATTTACAGTAATTTCTG  50

seq1  GCTTTCTCTTTCCATCCTCATAGGTTTTTCTTCATCTACTGAATTTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTTTCCATCCTCATAGGTTTTTCTTCATCTACTGAATTTTACT  100

seq1  TACCAGCAGCTCACAGATCTTCAGGCTGCTTTCCTTTTGGACATTGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCAGCTCACAGATCTTCAGGCTGCTTTCCTTTTGGACATTGTTTG  150

seq1  TATTTAAGTAGTCATGACATGCCATGAATACTACAAGAGATTACTAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGTAGTCATGACATGCCATGAATACTACAAGAGATTACTAACAA  200

seq1  ACCTCTGAGTATCTTATTTATTGATTCTAAAGCTTATGTCTATCCATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGTATCTTATTTATTGATTCTAAAGCTTATGTCTATCCATATG  250

seq1  CTTTAGAAAGCATCATTAGAAAGCACCAACTCGGGGATTAAAACCTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAAGCATCATTAGAAAGCACCAACTCGGGGATTAAAACCTCATG  300

seq1  GGTTCCCATCCATGCTTTAAGCTTTCCTTTCACTCCATCTCACACAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCATCCATGCTTTAAGCTTTCCTTTCACTCCATCTCACACAGCTC  350

seq1  TACTCTTCAGCTTGCTTCAGCTGTTTAGCTTTCTCTGACATTTCTCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCAGCTTGCTTCAGCTGTTTAGCTTTCTCTGACATTTCTCACAA  400

seq1  TCTGCCACCTCCATGGTTTCCTCACTTTGTCTTCCTTATGCCCCTGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACCTCCATGGTTTCCTCACTTTGTCTTCCTTATGCCCCTGGAAT  450

seq1  TGAACAGCTCCTGTGTTCTTGTAAGCTGCCCAATGACTATTTCCTGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGCTCCTGTGTTCTTGTAAGCTGCCCAATGACTATTTCCTGATGA  500

seq1  CTACCATGGACCATCTCCACCTCCTTCATGAGTCCCATCGGTTCCTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATGGACCATCTCCACCTCCTTCATGAGTCCCATCGGTTCCTAGGT  550

seq1  TCTATGACCATTTCTTTTAGATAAGCAATGCCTTTGCTGTCCTCTATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGACCATTTCTTTTAGATAAGCAATGCCTTTGCTGTCCTCTATCTA  600

seq1  CCATAAATTCCTCTAACCAAGAACTAATTGTTGTCTTTTTTTCCTGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAATTCCTCTAACCAAGAACTAATTGTTGTCTTTTTTTCCTGCTTC  650

seq1  ATTTTAAAGCTTAATGATTCCTTATTATGGAATAGGGGTATTATTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGCTTAATGATTCCTTATTATGGAATAGGGGTATTATTAAATA  700

seq1  GAATTCTTTATAATCTAGGAAGAAATAATGCTCCTGCAAACAAGCACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAATCTAGGAAGAAATAATGCTCCTGCAAACAAGCACAAC  750

seq1  CATCACCACCACCTGACCTAATAGGAAGAGAAAACTCTGACCGTTGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCACCACCTGACCTAATAGGAAGAGAAAACTCTGACCGTTGATTT  800

seq1  TTTCCTGAGAATAACATTTCTGACTTCCATCACATGGAAGTGTCTGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAGAATAACATTTCTGACTTCCATCACATGGAAGTGTCTGGAAA  850

seq1  GTCACAAACTTGTTAGACAGATTCTTTAAATCTTGCATATTCTTATGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAACTTGTTAGACAGATTCTTTAAATCTTGCATATTCTTATGTGT  900

seq1  ACCTTAGTTCATATTTTTTTATGATGCACATACACCATGATTCTAATCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGTTCATATTTTTTTATGATGCACATACACCATGATTCTAATCAT  950

seq1  TCTGATAGTTTTGGTAATGGAAATTTTAGAATGAAACTTTGTAACATAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAGTTTTGGTAATGGAAATTTTAGAATGAAACTTTGTAACATAAA  1000

seq1  AGGTTTTCTCATTAACTACCCACATTTTCTTATCCCTTGAGTTTTGTGTC  1050
      ||| ||||||||||||||||||||||||| |||||| |||||||||||||
seq2  AGG-TTTCTCATTAACTACCCACATTTTC-TATCCC-TGAGTTTTGTGTC  1047

seq1  ATTCCATGATTAATGCCACCACTACTTC-TTTCTGCCTTTCTAGGATTGG  1099
      ||||||||| ||||||   ||||||||| |||||| ||||||||||||||
seq2  ATTCCATGA-TAATGC--ACACTACTTCTTTTCTG-CTTTCTAGGATTGG  1093

seq1  GCATCCTGCACCTT--TCTCACCC-ATC-TTTGAAATCTTTCCCTAAGGT  1145
       |||| ||||||||  |||||||| ||| |||  ||||||||||||  ||
seq2  CCATCTTGCACCTTTCTCTCACCCAATCTTTTTGAATCTTTCCCTA--GT  1141

seq1  C-TTCCTCTTAGTCAGCAGCCATGCACACCTTTGTTTAGTTTTCATAAAC  1194
      | ||| ||||||||||||| |||||| ||   ||||||| || |||||||
seq2  CTTTCTTCTTAGTCAGCAG-CATGCA-AC---TGTTTAGCTTCCATAAAC  1186

seq1  CCTTTGTTC  1203
      |  ||||||
seq2  C--TTGTTC  1193

seq1: chr11_27015265_27016037
seq2: B6Ng01-347P08.g_67_845 (reverse)

seq1  AGCC-TTTTGCA-TTTCATGCTACCTTTGAGTTC-AATG-AATTTATATT  46
      |||| ||||||| ||||||||||||||||||||| |||| ||||||||||
seq2  AGCCTTTTTGCATTTTCATGCTACCTTTGAGTTCAAATGAAATTTATATT  50

seq1  ATTTGTCTTCACTGTAAGCAGAAACACTGACTTCTGTTGATCTG-TTTTC  95
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTTGTCTTCACTGTAAGCAGAAACACTGACTTCTGTTGATCTGTTTTTC  100

seq1  TGTGAGCTGTCAAAACTCATGCCTAGGCACACTGATAAGACAGACAAAAG  145
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCTGTCAAAACTCATGCCTAGGCACACTGATAAGACAGACAAAAG  150

seq1  GACACAAGGATGTCATAATCTTTTCAATC-TTTTTATTTTTATTTTTTTT  194
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GACACAAGGATGTCATAATCTTTTCAATCTTTTTTATTTTTATTTTTTTT  200

seq1  AAACATAGTATCATGTAGTTCAGGCTGGTTTTGAACTGATTAGGCAAAGT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGTATCATGTAGTTCAGGCTGGTTTTGAACTGATTAGGCAAAGT  250

seq1  TATCCTTAAGTTTCTCCTTTTCCTTTTTCCACTCCCCATGTGTAAGGATT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTAAGTTTCTCCTTTTCCTTTTTCCACTCCCCATGTGTAAGGATT  300

seq1  ATAGATGTATGGATGGCAGTATTTACTGTTTATGCTGTTATGAGATAGAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTATGGATGGCAGTATTTACTGTTTATGCTGTTATGAGATAGAA  350

seq1  CCTAAGGCTTCATGCTTCTTAGTCAAACACTCTATAAACTAATTTTCATC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGCTTCATGCTTCTTAGTCAAACACTCTATAAACTAATTTTCATC  400

seq1  TCCACTTCATTTTATGTATGTATACATGTAATATTTTATGTATACATATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCATTTTATGTATGTATACATGTAATATTTTATGTATACATATA  450

seq1  TGTGATTTCCATACCTCACAGATAATCTAATGACTTCTATAATGTTGGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTCCATACCTCACAGATAATCTAATGACTTCTATAATGTTGGTT  500

seq1  TACACTGAAAGCAACATTGACATTTTTTGTGAAATGGAATGCTAAAGGAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGAAAGCAACATTGACATTTTTTGTGAAATGGAATGCTAAAGGAT  550

seq1  CTGAGACTTAAAAGCACTTGCAGGCTAATGATTTAGTCAAGCCATTTTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTTAAAAGCACTTGCAGGCTAATGATTTAGTCAAGCCATTTTCT  600

seq1  TGATGTTGGTTAAAGACTTGTGCTACCAGGATCAGGACAAACATCTTTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGGTTAAAGACTTGTGCTACCAGGATCAGGACAAACATCTTTTT  650

seq1  TTTTTTTAAATTTATTTTTTATTAGATATTTTCTTTATATACATTTCAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAATTTATTTTTTATTAGATATTTTCTTTATATACATTTCAAA  700

seq1  AGCTATCCCAAAAGCTCCCTATACCTTCCCCCGCCCTGCTCCCCTACCCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCCCAAAAGCTCCCTATACCTTCCCCCGCCCTGCTCCCCTACCCA  750

seq1  CCCACTTCTGCTTCTTGGCCCTGGAATTC  773
      |||||||||||||||||||||||||||||
seq2  CCCACTTCTGCTTCTTGGCCCTGGAATTC  779