BAC Information

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BAC

Clone NameB6Ng01-348C04
Chromosome11 (Build37)
Map Location 53,953,608 - 53,954,229
singlet/doubletsinglet
Overlap genenone
Upstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2
Downstream geneLOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348C04.bB6Ng01-348C04.g
ACCGA129520GA129521
length9171,113
definitionB6Ng01-348C04.b B6Ng01-348C04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcgttcatggggaataattgcaatccccgatccccatcacgaa
tggggttcaacgggttacccgcgcctgccggcgtagggtaggcacacgct
gagccagtcagtgtagcgcgcgtgcagccccggacatctaagggcatcac
agacctgttattgctcaatctcgggtggctgaacgccacttgtccctcta
agaagttgggggacgccgaccgctcgggggtcgcgtaactagttagcatg
ccagagtctcgttcgttatcggaattaaccagacaaatcgctccaccaac
taagaacggccatgcaccaccacccacggaatcgagaaagagctatcaat
ctgtcaatcctgtccgtgtccgggccgggtgaggtttcccgtgttgagtc
aaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt
taagtttcagctttgcaaccatactccccccggaacccaaagactttggt
ttcccggaagctgcccggcgggtcatgggaataacgccgccgcatcgcca
gtcggcatcgtttatggtcggaactacgacggtatctgatcgtcttcgaa
cctccgactttcgttcttgattaatgaaaacattcttggcaaatgctttc
gctctggtccgtcttgcgccggtccaagaatttcacctctagcggcgcaa
tacgaatgcccccggccgtccctcttaatcatggcctcagttccgaaaac
caacaaaatagaaccgcggtcctattccattattcctagctgcggtatcc
aggcggctcgggcctgctttgaacactctaattttttcaaagtaaacgct
ttcgggccccgcgggacactcagctaagagcatcgagggggcgccgagag
gcaagggggcgggggac
gaattcagaaatcctcccatccctgcctccctaggactgggaataaaggc
ttgagccaccactcccgggtatatttaatttttttaatttttaaatttta
tttgttttatttatttttctttttttcaagatgtggtttctctgtgtaac
cctggctgtcctggaactcactctgtagaccaggctggccttgaaccatt
aatctgaacgtttttgcttcccaaatgctgggattagaggcatgtgacac
cactgcccggattaattttatttgtttgaaaataccttccttccttcctt
ccttccttccttccttccttccttcctccttccttcctcccttttctttc
tttctttctttctttctttctttctttctttctttctttctctctctctt
tctctctttctattagtttttttttttttttgtttttttggagatatggt
ttctctagtcctagctgacttgtaagccagggtgaccttgaaagcagaaa
tctgccttctttctttctttctttctttctttctttctttctttctttct
ttctttctttctttctttcttccaaaaatgctcagggacatcactctacc
tccagccagagaagagtctcaggaaatgtatgtgagcttgctttgctttg
ttttgtggggccaaatgtgacagacatttcttttggctttgtgtgttttg
ccagccagctctcttgctctgctcactcactcactcactcactcactcac
tcactcactcactcattagcttgcttactgtggttttcacttctatctat
ctctgcagggttcccagactgccctttggtattcaaacgggagccgcttt
ggactgactggctgccttcctcctcctccccctcctcccccttctgcttc
agatttattttattatatgtaagtacactgtagcaggtggtaggacacaa
ctagacgagggcaccagatctcatgtggggtggatgtgacaacccacatg
gtggtgctgggattgactcagatcttcaggaagagcagtctaggctctaa
ccggcctgagccatctctctagcctctctgcattccatcgtaggcatgat
ggataccagcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53953608_53954229
seq2: B6Ng01-348C04.g_572_1178 (reverse)

seq1  CATGCTGGGATCAGTCATGCCTTAAGAAGGAATGCAG-GAGGCTGGAGAG  49
      |||||||| |||  ||||||| || || ||||||||| |||||| |||||
seq2  CATGCTGGTATCCATCATGCC-TACGATGGAATGCAGAGAGGCTAGAGAG  49

seq1  ATGGCTCA-GCAGTTAAGAGCACTGACTGCT-TTTCTGAAGATCCCGAGT  97
      |||||||| || | | |||||   ||||||| || |||||||| | ||||
seq2  ATGGCTCAGGCCGGTTAGAGCCTAGACTGCTCTTCCTGAAGAT-CTGAGT  98

seq1  TCAAATCCCAGCAACCACATGGTGGT--TCACAACCACCCACAATGAGAT  145
         |||||||||| |  ||||  |||  ||||| ||||||   |||||||
seq2  --CAATCCCAGCACCACCATGTGGGTTGTCACATCCACCCCACATGAGAT  146

seq1  CTGGTGCCCTCTTCT-GGTGTGT-CTGAAAACTGCTACAGTGTACTTACA  193
      ||||||||||| ||| | ||||| ||   | |||||||||||||||||||
seq2  CTGGTGCCCTCGTCTAGTTGTGTCCTACCACCTGCTACAGTGTACTTACA  196

seq1  TATAATAAATAAATAAATCTGAAGAAGAAGGGGGAGAAGGAGGAGTAGTA  243
      |||||||   |||||||||||||| ||||||||                 
seq2  TATAATA---AAATAAATCTGAAGCAGAAGGGG-----------------  226

seq1  GGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGGCAGCCAGTCAGTCCAAA  293
                ||||||| ||||||||||||||||||||||||||||||||
seq2  ----------GAGGAGGGGGAGGAGGAGGAAGGCAGCCAGTCAGTCCAAA  266

seq1  GGGACTAGTGTGTACTCTCGGTGCTTTGTTTGATTCCCAAAGGGCAGTCT  343
      | |           ||| |        |||||| | ||||||||||||||
seq2  GCG----------GCTCCC--------GTTTGAATACCAAAGGGCAGTCT  298

seq1  TGGAACCCTGCAGAGATAGACAGAAATGGAAACCACAGCAAACAAGCTAG  393
       ||||||||||||||||||| |||| || ||||||||| || ||||||| 
seq2  GGGAACCCTGCAGAGATAGATAGAAGTGAAAACCACAGTAAGCAAGCTAA  348

seq1  TTA------------------------------GAGTGAGTGAGCAGAGC  413
      | |                              |||||||||||||||||
seq2  TGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGCAGAGC  398

seq1  AAGAGAGCTGGC-----AAACACACAAAGCCAAAAGAAATGTCTGTCAAG  458
      ||||||||||||     |||||||||||||||||||||||||||||||  
seq2  AAGAGAGCTGGCTGGCAAAACACACAAAGCCAAAAGAAATGTCTGTCACA  448

seq1  TTTGGCCCCACAAAGCAAAGCAAAGCAAGCTCACATACATTTCCTGAGAC  508
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTGGCCCCACAAAACAAAGCAAAGCAAGCTCACATACATTTCCTGAGAC  498

seq1  TCATCCCTGGCTGGAGGGAGAGTGATGTCCCTGAGCATTTTTGGAAGAAA  558
      || || ||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTTCTCTGGCTGGAGGTAGAGTGATGTCCCTGAGCATTTTTGGAAGAAA  548

seq1  GAAGGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  608
      ||    ||||||||||||||||||||||||||||||||||||||||||||
seq2  GA----AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  594

seq1  AAGAAAAGAAAGAA  622
      ||| ||||||||||
seq2  AAG-AAAGAAAGAA  607