BAC Information

Click to search

BAC

Clone NameB6Ng01-348J22
Chromosome11 (Build37)
Map Location 102,536,555 - 102,656,991
singlet/doubletdoublet
Overlap geneGm1564, LOC100042456, Ccdc43, Adam11
Upstream geneDhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps
Downstream geneGja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348J22.bB6Ng01-348J22.g
ACCGA129862GA129863
length692815
definitionB6Ng01-348J22.b B6Ng01-348J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,656,302 - 102,656,991)(102,536,555 - 102,537,368)
sequence
gaattcactctgtagaccaggctggcctcgaactcagagatctgcctgcc
tctgcctcccgagtgctggaattaaaggcatgcaccaccactgcctggca
aaatatttttttttaaaaagacttatttatttattacaggtaagtacact
gtagctgtcttcagacacaccagaagagagaatcagatcctattacagat
ggttgtgagccaccatgtggttgctgggaattgaactcaggatctccaga
agagcagtcagtgctcttaaccactgagccatctctccagccccaaattg
aaacggttttaaaaaattgttttctctatgttttcttcagtaaaatctct
atcccaggcactaagtgttgttgcaggtagcatattggctccagaaaata
tagctaggactttaccttttcaagataattaaaatgtagtcagtcagcaa
tggctacacacagagcccagcacttgggaggcagggccaggtggatctct
tgagttcaaggctagcctggtctacagaacaagtcaaggacagcaagggc
tacacaaagatcacctgtctcagaaaaccaagaaaaaattaattttgaat
gtaaaagtcaacaaagccagcaatctaatgttatatggtcatgtggagtg
gagcttggatgttgcatgaaacagcttaggaattacgtgtgt
gaattcagtctgtgaatcacatggaaggactaacaaaaaccggagaagac
aatctctttgaatcagttacagagaaaaaaataaagcagccaaatggatt
ttgtgatagctattcagcttcacagtatgggataatagaaaatgtaaaca
aacataattttcaagccaagccccagagtggacattatgatcctgaggac
attccaaagcattttgatggcttacctcaaaatacatatcaagatctgtt
agagtcacagggtcattttaatagccacagacaaggaagtggagacaaca
atattaatagccgtgtgaatcgcacacaggcctcatgcttttctaataat
tatatgatgggagatttacgacataatcagggttttcaacaacttggttc
aaatgggtttcccctaagatctacccacccatttggccattcagttgttc
cactgttggattcctatgatttgttttcttatgatgacttaagccattta
tatccttattttaatgacatgatgtatggtgataattccttttctggttt
tgtgccaacttttggatttcaaagaccaattaaaacccgtagtggaccag
ctagtgagcttcatattcgtctagaagagtgctatgaacaatggcgagca
ttggaaaaggagagaaaaaaggtaacagaattatccatttagaagtaaca
gtgtgttcagtccacttagctttgtttactttgctttgtttaagagttct
ttttttggtttttcaagacaggacttctctgaatagctctggctgtcatg
atactcctgtagacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102656302_102656991
seq2: B6Ng01-348J22.b_51_742 (reverse)

seq1  ACACACGTAATTCCTTAGCTG-TTCATGCAACATCCAAGCTCCACTCCAC  49
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  ACACACGTAATTCCTAAGCTGTTTCATGCAACATCCAAGCTCCACTCCAC  50

seq1  ATGACCATATAACATTAGATTGCTGGCTTTGTTGACTTTTACATTC-AAA  98
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGACCATATAACATTAGATTGCTGGCTTTGTTGACTTTTACATTCAAAA  100

seq1  TTAATTTTTTCTTGGTTTTCTGAGACAGGTGATCTTTGTGTAGCCCTTGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTTCTTGGTTTTCTGAGACAGGTGATCTTTGTGTAGCCCTTGC  150

seq1  TGTCCTTGACTTGTTCTGTAGACCAGGCTAGCCTTGAACTCAAGAGATCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTGACTTGTTCTGTAGACCAGGCTAGCCTTGAACTCAAGAGATCC  200

seq1  ACCTGGCCCTGCCTCCCAAGTGCTGGGCTCTGTGTGTAGCCATTGCTGAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCCCTGCCTCCCAAGTGCTGGGCTCTGTGTGTAGCCATTGCTGAC  250

seq1  TGACTACATTTTAATTATCTTGAAAAGGTAAAGTCCTAGCTATATTTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACATTTTAATTATCTTGAAAAGGTAAAGTCCTAGCTATATTTTCT  300

seq1  GGAGCCAATATGCTACCTGCAACAACACTTAGTGCCTGGGATAGAGATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAATATGCTACCTGCAACAACACTTAGTGCCTGGGATAGAGATTT  350

seq1  TACTGAAGAAAACATAGAGAAAACAATTTTTTAAAACCGTTTCAATTTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAGAAAACATAGAGAAAACAATTTTTTAAAACCGTTTCAATTTGG  400

seq1  GGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCTGGAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCTGGAGA  450

seq1  TCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAA  500

seq1  TAGGATCTGATTCTCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCTGATTCTCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACT  550

seq1  TACCTGTAATAAATAAATAAGTCTTTTTAAAAAAAAATATTTTGCCAGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTAATAAATAAATAAGTCTTTTTAAAAAAAAATATTTTGCCAGGC  600

seq1  AGTGGTGGTGCATGCCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGTGCATGCCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGCA  650

seq1  GATCTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAATTC  690
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAATTC  692

seq1: chr11_102536555_102537368
seq2: B6Ng01-348J22.g_65_879

seq1  GAATTCAGTCTGTGAATCACATGGAAGGACTAACAAAAACCGGAGAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTGTGAATCACATGGAAGGACTAACAAAAACCGGAGAAGAC  50

seq1  AATCTCTTTGAATCAGTTACAGAGAAAAAAATAAAGCAGCCAAATGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTTGAATCAGTTACAGAGAAAAAAATAAAGCAGCCAAATGGATT  100

seq1  TTGTGATAGCTATTCAGCTTCACAGTATGGGATAATAGAAAATGTAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATAGCTATTCAGCTTCACAGTATGGGATAATAGAAAATGTAAACA  150

seq1  AACATAATTTTCAAGCCAAGCCCCAGAGTGGACATTATGATCCTGAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAATTTTCAAGCCAAGCCCCAGAGTGGACATTATGATCCTGAGGAC  200

seq1  ATTCCAAAGCATTTTGATGGCTTACCTCAAAATACATATCAAGATCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAAGCATTTTGATGGCTTACCTCAAAATACATATCAAGATCTGTT  250

seq1  AGAGTCACAGGGTCATTTTAATAGCCACAGACAAGGAAGTGGAGACAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACAGGGTCATTTTAATAGCCACAGACAAGGAAGTGGAGACAACA  300

seq1  ATATTAATAGCCGTGTGAATCGCACACAGGCCTCATGCTTTTCTAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATAGCCGTGTGAATCGCACACAGGCCTCATGCTTTTCTAATAAT  350

seq1  TATATGATGGGAGATTTACGACATAATCAGGGTTTTCAACAACTTGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATGGGAGATTTACGACATAATCAGGGTTTTCAACAACTTGGTTC  400

seq1  AAATGGGTTTCCCCTAAGATCTACCCACCCATTTGGCCATTCAGTTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGTTTCCCCTAAGATCTACCCACCCATTTGGCCATTCAGTTGTTC  450

seq1  CACTGTTGGATTCCTATGATTTGTTTTCTTATGATGACTTAAGCCATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGGATTCCTATGATTTGTTTTCTTATGATGACTTAAGCCATTTA  500

seq1  TATCCTTATTTTAATGACATGATGTATGGTGATAATTCCTTTTCTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTATTTTAATGACATGATGTATGGTGATAATTCCTTTTCTGGTTT  550

seq1  TGTGCCAACTTTTGGATTTCAAAGACCAATTAAAACCCGTAGTGGACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAACTTTTGGATTTCAAAGACCAATTAAAACCCGTAGTGGACCAG  600

seq1  CTAGTGAGCTTCATATTCGTCTAGAAGAGTGCTATGAACAATGGCGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAGCTTCATATTCGTCTAGAAGAGTGCTATGAACAATGGCGAGCA  650

seq1  TTGGAAAAGGAGAGAAAAAAGGTAACAGAATTATCCATTTAGAAGTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAGGAGAGAAAAAAGGTAACAGAATTATCCATTTAGAAGTAACA  700

seq1  GTGTGTTCAGTCCACTTAGCTTTGTTTACTTTGCTTTGTTTAAGAGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTCAGTCCACTTAGCTTTGTTTACTTTGCTTTGTTTAAGAGTTCT  750

seq1  TTTTTTGGTTTTTCAAGACAGGACTTCTCTGAATAGCTCTGGCTGTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGTTTTTCAAGACAGGACTTCTCTGAATAGCTCTGGCTGTCATG  800

seq1  ATACT-CTGTAGACC  814
      ||||| |||||||||
seq2  ATACTCCTGTAGACC  815