BAC Information

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BAC

Clone NameB6Ng01-348J23
Chromosome11 (Build37)
Map Location 60,945,691 - 60,946,664
singlet/doubletsinglet
Overlap geneLOC668228
Upstream geneRai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12
Downstream geneTnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348J23.bB6Ng01-348J23.g
ACCGA129864GA129865
length1,0541,003
definitionB6Ng01-348J23.b B6Ng01-348J23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagggcgtattattagtacctaagtggaatgatggttgttagt
tcagtatcattgaggctgttttgttttgttttgttttgttttgttttgtt
ttgttttgttttgttttgtttgagaaagggtttctctgtgtaacagagcc
atggctgtcctggattcaattcgtagatcagactagccttgaactcacag
agatccacctgcctgtgcctcccgagagccaggattaaaggcgagcacca
ccacactcagcttgtggcttttttgatcttaggtcaactaactgtgtatt
caaaaataagataagtctaaagtctttttgcccttcatacctgttaatca
tgtagtacagtttagatcagagattgagatataataattttaatgtactg
tttttatttactctttgaaaatttcatgcatgcatacaatatattttgac
acatccaccccctagttctctcctaactctcctttgcccacttactcatg
gtgtggggtcatccactggagcgtggttgagattctagggggcatacctg
taatgaaacagactctcctgctcccagagccatccaactgtcagcatcgc
tttagctaagggataggggctcactaatctctccccatccacaatgcagt
gttgactggcttaatcttacacggtcacccacagctgcgcgctctcagga
gcgcagtggtcttagttgctcctccgcacctctggctcttcagtcaccac
cctctcgttggtaatcctcaactcccaacgggtaggagtgtgatctaaat
gtagtctgcacaactctacagatactttcctgtcttctctttgggcagtt
gagagtttctgtggtaactgctcttcctctgcacaaagaaaccttctctg
atgatgtcgaggagttgtactatctatgggtatagaaatgcaaatgtaga
ggtagtttgacactaagcacttagcagaataactcctgtcgtaggttcat
gtagggacgcctctaagctccccagcctgccaaggaactcttgaatttgt
agtg
gaattcaatggcgtctggttgctaatatttttaccatgtaactattcatt
ccagtatgtatgtatgtatgtatgtatgtatgtatgtatcatctatctgt
gtatctatgtgtctatcaccatgataactaccattgtcattttgcctaag
tgccaggtttgggccaggcctttacttaaatttcatgtgtatgcagcaac
cgtgttcacaggttcatgttcacagggtgctgatacatagtttctagaga
attggatgaggcatacttgacccagaagtaaataccacaggatctgggac
ttggagtaatcagccagaagttttgtgttggtttgttttaccatgaaaag
gtgttggattttctcaaaggcttttctgtacccatttggccgactgtgtc
gttccctcttaattctttcattgttgtacacggaagcgatggctctttgc
aaagccgaatccttggagcagcctaagcacaacccccttttgatcacagc
gaataacatgctgtggggtgcatgtgctgacattttttgaggcgcttgtc
ccagtattcataagacatattggtctgtggttttatttcttttaatgtct
ctttggggctttgacatacgatgtattttgtctgacaatagttgtaaatt
tgcatctgttctttgggcatgatttgcattttttctctttatttttgctt
ttcaaggcagggtttctctgtgtagccctggggtttgctctgtagtccag
gctatccttgaatgcacaaagatttgcagtctctttcctcctcaaatact
gggattaaaggcctgagccaccacaacctggcaatgcaggaaatatcttg
ctccataattttatttttaaatcttctgtgtcctttgatttgtgtggggt
tggggcgtggctaagaggtggaaactgtctagcagtctgtagtccctggg
cctccatctgtgaccaccaccaaatcaaaaaacaaatttttctattaata
gca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_60945691_60946664
seq2: B6Ng01-348J23.g_68_1053

seq1  GAATTCAATGGCGTCTGGTTGCTAATATTTTTACCATGTAACTATTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGCGTCTGGTTGCTAATATTTTTACCATGTAACTATTCATT  50

seq1  CCAGTATGTATGTATGTATGTATGTATGTATGTATGTATCATCTATCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATGTATGTATGTATGTATGTATGTATGTATGTATCATCTATCTGT  100

seq1  GTATCTATGTGTCTATCACCATGATAACTACCATTGTCATTTTGCCTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTATGTGTCTATCACCATGATAACTACCATTGTCATTTTGCCTAAG  150

seq1  TGCCAGGTTTGGGCCAGGCCTTTACTTAAATTTCATGTGTATGCAGCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGTTTGGGCCAGGCCTTTACTTAAATTTCATGTGTATGCAGCAAC  200

seq1  CGTGTTCACAGGTTCATGTTCACAGGGTGCTGATACATAGTTTCTAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTCACAGGTTCATGTTCACAGGGTGCTGATACATAGTTTCTAGAGA  250

seq1  ATTGGATGAGGCATACTTGACCCAGAAGTAAATACCACAGGATCTGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGAGGCATACTTGACCCAGAAGTAAATACCACAGGATCTGGGAC  300

seq1  TTGGAGTAATCAGCCAGAAGTTTTGTGTTGGTTTGTTTTACCATGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTAATCAGCCAGAAGTTTTGTGTTGGTTTGTTTTACCATGAAAAG  350

seq1  GTGTTGGATTTTCTCAAAGGCTTTTCTGTACCCATTTGGCCGACTGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGATTTTCTCAAAGGCTTTTCTGTACCCATTTGGCCGACTGTGTC  400

seq1  GTTCCCTCTTAATTCTTTCATTGTTGTACACGGAAGCGATGGCTCTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTCTTAATTCTTTCATTGTTGTACACGGAAGCGATGGCTCTTTGC  450

seq1  AAAGCCGAATCCTTGGAGCAGCCTAAGCACAACCCCCTTTTGATCACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCGAATCCTTGGAGCAGCCTAAGCACAACCCCCTTTTGATCACAGC  500

seq1  GAATAACATGCTGTGGGGTGCATGTGCTGACATTTTTTGAGGCGCTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACATGCTGTGGGGTGCATGTGCTGACATTTTTTGAGGCGCTTGTC  550

seq1  CCAGTATTCATAAGACATATTGGTCTGTGGTTTTATTTCTTTTAATGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTCATAAGACATATTGGTCTGTGGTTTTATTTCTTTTAATGTCT  600

seq1  CTTTGGGGCTTTGACATACGATGTATTTTGTCTGACAATAGTTGTAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGGCTTTGACATACGATGTATTTTGTCTGACAATAGTTGTAAATT  650

seq1  TGCATCTGTTCTTTGGGCATGATTTGCATTTTTTCCCTTTATTTTTGCTT  700
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCATCTGTTCTTTGGGCATGATTTGCATTTTTTCTCTTTATTTTTGCTT  700

seq1  TTCAAGGCAGGGTTTCTCTGTGTAGCCCTGGGGTTTGCTCTGTAGTCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCAGGGTTTCTCTGTGTAGCCCTGGGGTTTGCTCTGTAGTCCAG  750

seq1  GCTATCCTTGAATGCACAAAGATTTGCAGTCTC-TTCCTCC-CAAATACT  798
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  GCTATCCTTGAATGCACAAAGATTTGCAGTCTCTTTCCTCCTCAAATACT  800

seq1  GGGATTAAAGGCCTGAGCCACCACAACCTGGCAATGCAGGAAATATCTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAAAGGCCTGAGCCACCACAACCTGGCAATGCAGGAAATATCTTG  850

seq1  CTCCATAATTTTATTTTTAAATCTTCTGTGTCCTTTGATTTGTGTTGGGG  898
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCCATAATTTTATTTTTAAATCTTCTGTGTCCTTTGATTTGTG-TGGGG  899

seq1  TTGGGGCGTGGCTAAGAGGTGGAAACTGTCTAGCAGTCTGTAGTCCCTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCGTGGCTAAGAGGTGGAAACTGTCTAGCAGTCTGTAGTCCCTGG  949

seq1  G-CTCCACCTGT-AACACCAC---------AAACAAA  974
      | ||||| |||| | ||||||         |||||||
seq2  GCCTCCATCTGTGACCACCACCAAATCAAAAAACAAA  986