BAC Information

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BAC

Clone NameB6Ng01-349A01
Chromosome11 (Build37)
Map Location 120,792,047 - 120,921,176
singlet/doubletdoublet
Overlap geneCcdc57, Slc16a3, Csnk1d, Cd7, Sectm1b
Upstream geneBaiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, LOC100043454
Downstream geneSectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349A01.bB6Ng01-349A01.g
ACCGA130119GA130120
length637927
definitionB6Ng01-349A01.b B6Ng01-349A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,792,047 - 120,792,680)(120,920,250 - 120,921,176)
sequence
gaattccttcaggactgaagctgccagagacagaaagaggtcaccacact
taagcacggctatctgactccacatcaggcagtgtaagtgctgattctct
gccagcttcaaatgagaccttgtggctccagtaaaaagaaaatccaggag
tcagaatagacatggtggttcttcagagtgaaattactggaattatgtgg
gtgcttaagaagagacaagaagccgggcttggtggcacatgcctttaatc
ccagcactcgggaggcagaggcaggtggatttctgagttcgaggccagcc
tggtctacagagtgagttccaggacagccagggctatacagagaaaccct
gtctcgaaaaacaaaaacaaacaaaaaaagaatggttcccataggcttat
gtatttgaatgcttagtcaccagggagtggaactgtttgtaaagattaga
aggattaggaggtgtggccttataggaggaagtgtgtgtcactagggtgg
gctttgaggtttcagaagcccacgccaggctgtctcagtctgtcctgtct
ctattattagggtgtagctgtcagctaccaagtaccatgctttgctgcca
tgatgtttaatggactattcctctgaagctgtacacc
gaattctcgatcctccttttctttcccaagtcctcattgtttccctgttt
tttctcagaaagggaagtacacagtgctggaggtggacatagccacaggc
cagacttgaggccattggccgggtctgctgtgagtgccggctctcaaaat
ccagagagcccggtcactgacatctgtatgccatgacccagggtgccact
ctctgggctgagctggagctagactctcagaaggtcagggctgacaaggg
acaaatggcagaatatgcacactggagggtgaactcaaacacaggcctct
tagagcccagaggatccatctgacctggtggaaagagagtatctacctgt
gattctcagacagaaggtccaaaacacccaaagaagaaaagcatagacta
taatgttgtctggggttctggtgaagacaaaactcctctgtatgaagggg
cccagggctcagagagggaaagactgatggattgatgtttcttctacccc
cttgactgggctgctcccaaatccatttctaactgggttgctaagagagg
cgaagttaggctaccggagagaaagaggggctagccatccaatttcagaa
acagctttaagaactgggaagtgtcccaagggacagctcaatgcttgcca
ttttctctggtagccaatctcagtccaccgggcacttgtgtccacagggc
aaaccaaaggtcacctttaaagtcagggcaacctgcccagctttaatgag
gccaggaacaagaagctgggacccataccttcagtccttctgggaaggaa
tctttggtctactgtggggttcaccatactgtggtttcacttagtcactt
gactgtggtgcctgaccgaccagagaaccatagtgaccattaacaaagcc
atagaccactccaagcagaggtacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120792047_120792680
seq2: B6Ng01-349A01.b_50_686

seq1  GAATTCCTTCAGGACTGAAGCTGCCAGAGACAGAAAGAGGTCACCACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGGACTGAAGCTGCCAGAGACAGAAAGAGGTCACCACACT  50

seq1  TAAGCACGGCTATCTGACTCCACATCAGGCAGTGTAAGTGCTGATTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACGGCTATCTGACTCCACATCAGGCAGTGTAAGTGCTGATTCTCT  100

seq1  GCCAGCTTCAAATGAGACCTTGTGGCTCCAGTAAAAAGAAAATCCAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTTCAAATGAGACCTTGTGGCTCCAGTAAAAAGAAAATCCAGGAG  150

seq1  TCAGAATAGACATGGTGGTTCTTCAGAGTGAAATTACTGGAATTATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATAGACATGGTGGTTCTTCAGAGTGAAATTACTGGAATTATGTGG  200

seq1  GTGCTTAAGAAGAGACAAGAAGCCGGGCTTGGTGGCACATGCCTTTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAAGAAGAGACAAGAAGCCGGGCTTGGTGGCACATGCCTTTAATC  250

seq1  CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCC  300

seq1  TGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCT  350

seq1  GTCTCGAAAAACAAAAACAAACAAAAAAAGAATGGTTCCCATAGGCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGAAAAACAAAAACAAACAAAAAAAGAATGGTTCCCATAGGCTTAT  400

seq1  GTATTTGAATGCTTAGTCACCAGGGAGTGGAACTGTTTGTAAAGATTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGAATGCTTAGTCACCAGGGAGTGGAACTGTTTGTAAAGATTAGA  450

seq1  AGGATTAGGAGGTGTGGCCTTATAGGAGGAAGTGTGTGTCACTAGGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAGGAGGTGTGGCCTTATAGGAGGAAGTGTGTGTCACTAGGGTGG  500

seq1  GCTTTGAGGTTTCAGAAGCCCACGCCAGGCTGTCTCAGTCTGTCCTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAGGTTTCAGAAGCCCACGCCAGGCTGTCTCAGTCTGTCCTGTCT  550

seq1  CTA-GATTAGGGTGTAGCTGTCAGCTACCAAGTACCATGC-TTGCTGCCA  598
      |||  ||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTATTATTAGGGTGTAGCTGTCAGCTACCAAGTACCATGCTTTGCTGCCA  600

seq1  TGATG-ATAATGGACTAAGCCTCTGAAGCTGTACACC  634
      |||||  ||||||||||  ||||||||||||||||||
seq2  TGATGTTTAATGGACTATTCCTCTGAAGCTGTACACC  637

seq1: chr11_120920250_120921176
seq2: B6Ng01-349A01.g_69_995 (reverse)

seq1  CAGGTACCTCTGCTTGGAGTGGTGCTATGGCTTTGTT-ATGGTCACTATG  49
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  CAGGTACCTCTGCTTGGAGTGGT-CTATGGCTTTGTTAATGGTCACTATG  49

seq1  GTTCTCTGGTCGGTCAGGCACCACAGTCAAGTGACTAAGTGAAAACCACA  99
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTCTCTGGTCGGTCAGGCACCACAGTCAAGTGACTAAGTG-AAACCACA  98

seq1  GTATGGTGAAACCCCACAGTAGACC-AAGATTCCTTCCCAGAAGGACTGA  148
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  GTATGGTG-AACCCCACAGTAGACCAAAGATTCCTTCCCAGAAGGACTGA  147

seq1  AGGTATGGGTCCCAGCTTCTTGTTCCTGGCCTCATTAAAGCTGGGCAGGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGGGTCCCAGCTTCTTGTTCCTGGCCTCATTAAAGCTGGGCAGGT  197

seq1  TGCCCTGACTTT-AAGGTGACCTTTGGTTTGCCCTGTGGACACAAGTGCC  247
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGACTTTAAAGGTGACCTTTGGTTTGCCCTGTGGACACAAGTGCC  247

seq1  CGGTGGACTGAGATTGGCTACCAGAGAAAATGGCAAGCATTGAGCTGTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGACTGAGATTGGCTACCAGAGAAAATGGCAAGCATTGAGCTGTCC  297

seq1  CTTGGGACACTTCCCAGTTCTTAAAGCTGTTTCTGAAATTGGATGGCTAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGACACTTCCCAGTTCTTAAAGCTGTTTCTGAAATTGGATGGCTAG  347

seq1  CCCCTCTTTCTCTCCGGTAGCCTAACTTCGCCTCTCTTAGCAACCCAGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTTCTCTCCGGTAGCCTAACTTCGCCTCTCTTAGCAACCCAGTT  397

seq1  AGAAATGGATTTGGGAGCAGCCCAGTCAAGGGGGTAGAAGAAACATCAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGATTTGGGAGCAGCCCAGTCAAGGGGGTAGAAGAAACATCAAT  447

seq1  CCATCAGTCTTTCCCTCTCTGAGCCCTGGGCCCCTTCATACAGAGGAGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTCTTTCCCTCTCTGAGCCCTGGGCCCCTTCATACAGAGGAGTT  497

seq1  TTGTCTTCACCAGAACCCCAGACAACATTATAGTCTATGCTTTTCTTCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCACCAGAACCCCAGACAACATTATAGTCTATGCTTTTCTTCTT  547

seq1  TGGGTGTTTTGGACCTTCTGTCTGAGAATCACAGGTAGATACTCTCTTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTTTGGACCTTCTGTCTGAGAATCACAGGTAGATACTCTCTTTC  597

seq1  CACCAGGTCAGATGGATCCTCTGGGCTCTAAGAGGCCTGTGTTTGAGTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGTCAGATGGATCCTCTGGGCTCTAAGAGGCCTGTGTTTGAGTTC  647

seq1  ACCCTCCAGTGTGCATATTCTGCCATTTGTCCCTTGTCAGCCCTGACCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCAGTGTGCATATTCTGCCATTTGTCCCTTGTCAGCCCTGACCTT  697

seq1  CTGAGAGTCTAGCTCCAGCTCAGCCCAGAGAGTGGCACCCTGGGTCATGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTCTAGCTCCAGCTCAGCCCAGAGAGTGGCACCCTGGGTCATGG  747

seq1  CATACAGATGTCAGTGACCGGGCTCTCTGGATTTTGAGAGCCGGCACTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGATGTCAGTGACCGGGCTCTCTGGATTTTGAGAGCCGGCACTCA  797

seq1  CAGCAGACCCGGCCAATGGCCTCAAGTCTGGCCTGTGGCTATGTCCACCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGACCCGGCCAATGGCCTCAAGTCTGGCCTGTGGCTATGTCCACCT  847

seq1  CCAGCACTGTGTACTTCCCTTTCTGAGAAAAAACAGGGAAACAATGAGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTGTGTACTTCCCTTTCTGAGAAAAAACAGGGAAACAATGAGGA  897

seq1  CTTGGGAAAGAAAAGGAGGATCGAGAATTC  927
      ||||||||||||||||||||||||||||||
seq2  CTTGGGAAAGAAAAGGAGGATCGAGAATTC  927