BAC Information

Click to search

BAC

Clone NameB6Ng01-349J24
Chromosome11 (Build37)
Map Location 110,809,116 - 110,926,483
singlet/doubletdoublet
Overlap geneKcnj16
Upstream geneAbca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6, LOC100041523
Downstream geneKcnj2, LOC667003, LOC100041539, LOC100041559, EG629966, LOC629967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349J24.bB6Ng01-349J24.g
ACCGA130563GA130564
length8981,106
definitionB6Ng01-349J24.b B6Ng01-349J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,809,116 - 110,809,948)(110,925,381 - 110,926,483)
sequence
gaattcagggattattctctcagcagtcaggcctatcaaaggcatacttt
aattctttatctccattatactggttttgatctgcagctaggatctccat
atctgaacaaattgcagcctgtgtcacatgctgttcactttatccttcgg
agcctgcaccatatgaagggtggatgttctaaatttgtgtcctggtaatc
ccaacctctcggcaatattgaagtctttttttttttttttttttcagtgt
gtgtgaattttgattttgaagcacttcgtagttttggcttggtagctggg
aattctatatggtataaaaggaaatgtcttagatcaatctttagaaatgt
ggtagtctagtattgtggggtggagctggggattctataatcctaagtat
tcgatctttaataagcttgtgcttctggacttaaatccacatgttctcca
cagtctttcctcccctttggtgtgacaggatggccagcaggggctgaaat
caagtgctttcctttctcaatgtttgttaggctatgatgacactgtgaca
aattaggttatgtggcttgcgtgcacaaattgctcttttaacttaatgac
actaacttagaatgggtttgctaggatttaaccctctgtcactgctagtt
tcttcacaaggcaaaccaaactaagagcagagttttctagtttacaataa
tctttaaattcatacttgggttatacactcacaaacccaatcacaagttg
acattttctgttgaaataaaaaagaatgcattgaacacacctaaaccttc
tatgttagatatgctcagaatccatacatcattatttttaccgctggaga
aaatgatttgtttgtttgtttgtttgttgtttgtttgtttgggttttc
gaattctccactgagtgtgtaaagcaggtgcatgttatctctgagtacat
tggtatcgtagcgaagctttgcttttaaaatgacatgatgcgtttaggag
tcttttatcttccacggagttttgcagtccggtttaatgaatatgcttca
agcaccccaaagcatctgcctacctttaacttaagcccgtaaagactgcc
ttgagtcaccaaacaacctctacaaaatatttcgcgttctaggtggtagg
agcagggcacacttttatgtgtacgagtgttgaaaggagccgttctgagc
tgctgagtggatacccacctcctagtcccacatccgcacttggcccctag
gaggtgctggtgaaatgtgcatagattttcattttaccttaagaagcctg
cctcttttcctagcatgagcaatacacttaagagggtgcagaatggatca
tgaaagccctgggactcttttgatatccaaatggcatttcatttgctgag
gctgaatccccatcaagccccaatactgagggttgccatttaagcccttg
tataatgggatattttttcccacaaggaaagtcttctttatcatatatta
agtcatatattatttataaatagcttgggttaaatctgcaaagatgacta
tattagaacccaggttgtagcctgaagcgaaatgaatccagagacggaaa
acgttaactcttccttgaccaaggcatagaaaaggagttaacagctcatt
gattttttttttcttcctttctttcttctgtgttgtgactcactgcccta
agtagatggtgaagagttttccaaactataggaacacccccacccctgcc
cccacaggttaggatctctgttagaaaataagcccagctacccagagaaa
ggaagtatttttctagtttacaggttgttttacttaatagtcactcttag
taaatgaataagcaccaggccaagacagcttcattagagcggaagaatca
taaagaaatgaacacatatcctatgggttttgttggttgtgtagttttgc
tgtaagaggtagaataaaagtattactctaggtctttctgttacacatga
ctttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_110809116_110809948
seq2: B6Ng01-349J24.b_111_946

seq1  CCATTATACTGGTTTTGATCTGCAGCTAGGATCTCCATATCTGAACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATACTGGTTTTGATCTGCAGCTAGGATCTCCATATCTGAACAAAT  50

seq1  TGCAGCCTGTGTCACATGCTGTTCACTTTATCCTTCGGAGCCTGCACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCTGTGTCACATGCTGTTCACTTTATCCTTCGGAGCCTGCACCAT  100

seq1  ATGAAGGGTGGATGTTCTAAATTTGTGTCCTGGTAATCCCAACCTCTCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGGTGGATGTTCTAAATTTGTGTCCTGGTAATCCCAACCTCTCGG  150

seq1  CAATATTGAAGTCTTTTTTTTTTTTTTTTTTTCAGTGTGTGTGAATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTGAAGTCTTTTTTTTTTTTTTTTTTTCAGTGTGTGTGAATTTTG  200

seq1  ATTTTGAAGCACTTCGTAGTTTTGGCTTGGTAGCTGGGAATTCTATATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAGCACTTCGTAGTTTTGGCTTGGTAGCTGGGAATTCTATATGG  250

seq1  TATAAAAGGAAATGTCTTAGATCAATCTTTAGAAATGTGGTAGTCTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGGAAATGTCTTAGATCAATCTTTAGAAATGTGGTAGTCTAGTA  300

seq1  TTGTGGGGTGGAGCTGGGGATTCTATAATCCTAAGTATTCGATCTTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGGTGGAGCTGGGGATTCTATAATCCTAAGTATTCGATCTTTAAT  350

seq1  AAGCTTGTGCTTCTGGACTTAAATCCACATGTTCTCCACAGTCTTTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGTGCTTCTGGACTTAAATCCACATGTTCTCCACAGTCTTTCCTC  400

seq1  CCCTTTGGTGTGACAGGATGGCCAGCAGGGGCTGAAATCAAGTGCTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGGTGTGACAGGATGGCCAGCAGGGGCTGAAATCAAGTGCTTTCC  450

seq1  TTTCTCAATGTTTGTTAGGCTATGATGACACTGTGACAAATTAGGTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAATGTTTGTTAGGCTATGATGACACTGTGACAAATTAGGTTATG  500

seq1  TGGCTTGCGTGCACAAATTGCTCTTTTAACTTAATGACACTAACTTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCGTGCACAAATTGCTCTTTTAACTTAATGACACTAACTTAGAA  550

seq1  TGGGTTTGCTAGGATTTAACCCTCTGTCACTGCTAGTTTCTTCACAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGCTAGGATTTAACCCTCTGTCACTGCTAGTTTCTTCACAAGGC  600

seq1  AAACCAAACTAAGAGCAGAGTTTTCTAGTTTACAATAATC-TTCAATTCA  649
      |||||||||||||||||||||||||||||||||||||||| || ||||||
seq2  AAACCAAACTAAGAGCAGAGTTTTCTAGTTTACAATAATCTTTAAATTCA  650

seq1  TACTTGGGTTATACACTCACAAACCC-ATCACAAGTTGACA-TTTCTGTT  697
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  TACTTGGGTTATACACTCACAAACCCAATCACAAGTTGACATTTTCTGTT  700

seq1  GAAATAAAAAAGAATGCATTGAACACACCTAAACCTTCTATGTTAGATAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAAAAGAATGCATTGAACACACCTAAACCTTCTATGTTAGATAT  750

seq1  GCTCAGAATCCATACATCATTA-TTTTACCGCTGGAGAAAATGATTTGTT  796
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCTCAGAATCCATACATCATTATTTTTACCGCTGGAGAAAATGATTTGTT  800

seq1  TGTTTGTTTGTTTGTTTGTTTGTTTGTTTGGTTTTTC  833
      |||||||||||||| |||||||||||||||| |||||
seq2  TGTTTGTTTGTTTG-TTGTTTGTTTGTTTGGGTTTTC  836

seq1: chr11_110925381_110926483
seq2: B6Ng01-349J24.g_67_1172 (reverse)

seq1  GTAAAGTC-TGTGGTAAACAGAAAGA-CTAGAGTTATTACTTTA-TCTAC  47
      |||||||| ||||   |||||||||| ||||||| ||   |||| |||||
seq2  GTAAAGTCATGTG--TAACAGAAAGACCTAGAGTAATACTTTTATTCTAC  48

seq1  CTC-TACAGCAAAACTTACACAACCAAACAAAACCATAGGATATTGTGTT  96
      ||| ||||||||||| |||||||||||  ||| |||||||||| ||||||
seq2  CTCTTACAGCAAAAC-TACACAACCAACAAAACCCATAGGATA-TGTGTT  96

seq1  CATTTCTTTAATGATCTTCCCGCTCT-ATGAAGCTGTCTTGGCCTGGTGC  145
      ||||||||| |||||  | ||||||| |||||||||||||||||||||||
seq2  CATTTCTTT-ATGATTCTTCCGCTCTAATGAAGCTGTCTTGGCCTGGTGC  145

seq1  TTATTCATTTTACTAAGAGTGAACTATTTAAGTAAAACAA-CTGTAAACT  194
      ||||||| ||||||||||||| |||| ||||||||||||| |||||||||
seq2  TTATTCA-TTTACTAAGAGTG-ACTA-TTAAGTAAAACAACCTGTAAACT  192

seq1  AG-AAAATACTTCCTTTCTCTGGGTAGCTGGGCT--ATTTCTAACAGAGA  241
      || |||||||||||||||||||||||||||||||   |||||||||||||
seq2  AGAAAAATACTTCCTTTCTCTGGGTAGCTGGGCTTATTTTCTAACAGAGA  242

seq1  TCCTAACCTGTGGGGGCAGGGGTGGGGGTGTTCCTATAGTTTGGAAAACT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACCTGTGGGGGCAGGGGTGGGGGTGTTCCTATAGTTTGGAAAACT  292

seq1  CTTCACCATCTACTTA-GGCAGTGAGTCACAACACAGAAGAAAGAAAGGA  340
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTCACCATCTACTTAGGGCAGTGAGTCACAACACAGAAGAAAGAAAGGA  342

seq1  AG-AAAAAAAAATCAATGAGCTGTTAACTCCTTTTCTATGCCTTGGTCAA  389
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAAATCAATGAGCTGTTAACTCCTTTTCTATGCCTTGGTCAA  392

seq1  GGAAGAGTTAACGTTTTCCGTCTCTGGATTCATTTCGCTTCAGGCTACAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGTTAACGTTTTCCGTCTCTGGATTCATTTCGCTTCAGGCTACAA  442

seq1  CCTGGGTTCTAATATAGTCATCTTTGCAGATTTAACCCAAGCTATTTATA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTCTAATATAGTCATCTTTGCAGATTTAACCCAAGCTATTTATA  492

seq1  AATAATATATGACTTAATATATGATAAAGAAGACTTTCCTTGTGGGAAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATATGACTTAATATATGATAAAGAAGACTTTCCTTGTGGGAAAA  542

seq1  AATATCCCATTATACAAGGGCTTAAATGGCAACCCTCAGTATTGGGGCTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCATTATACAAGGGCTTAAATGGCAACCCTCAGTATTGGGGCTT  592

seq1  GATGGGGATTCAGCCTCAGCAAATGAAATGCCATTTGGATATCAAAAGAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGATTCAGCCTCAGCAAATGAAATGCCATTTGGATATCAAAAGAG  642

seq1  TCCCAGGGCTTTCATGATCCATTCTGCACCCTCTTAAGTGTATTGCTCAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGCTTTCATGATCCATTCTGCACCCTCTTAAGTGTATTGCTCAT  692

seq1  GCTAGGAAAAGAGGCAGGCTTCTTAAGGTAAAATGAAAATCTATGCACAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAAAAGAGGCAGGCTTCTTAAGGTAAAATGAAAATCTATGCACAT  742

seq1  TTCACCAGCACCTCCTAGGGGCCAAGTGCGGATGTGGGACTAGGAGGTGG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAGCACCTCCTAGGGGCCAAGTGCGGATGTGGGACTAGGAGGTGG  792

seq1  GTATCCACTCAGCAGCTCAGAACGGCTCCTTTCAACACTCGTACACATAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCACTCAGCAGCTCAGAACGGCTCCTTTCAACACTCGTACACATAA  842

seq1  AAGTGTGCCCTGCTCCTACCACCTAGAACGCGAAATATTTTGTAGAGGTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGCCCTGCTCCTACCACCTAGAACGCGAAATATTTTGTAGAGGTT  892

seq1  GTTTGGTGACTCAAGGCAGTCTTTACGGGCTTAAGTTAAAGGTAGGCAGA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTGACTCAAGGCAGTCTTTACGGGCTTAAGTTAAAGGTAGGCAGA  942

seq1  TGCTTTGGGGTGCTTGAAGCATATTCATTAAACCGGACTGCAAAACTCCG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGGGTGCTTGAAGCATATTCATTAAACCGGACTGCAAAACTCCG  992

seq1  TGGAAGATAAAAGACTCCTAAACGCATCATGTCATTTTAAAAGCAAAGCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGATAAAAGACTCCTAAACGCATCATGTCATTTTAAAAGCAAAGCT  1042

seq1  TCGCTACGATACCAATGTACTCAGAGATAACATGCACCTGCTTTACACAC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTACGATACCAATGTACTCAGAGATAACATGCACCTGCTTTACACAC  1092

seq1  TCAGTGGAGAATTC  1103
      ||||||||||||||
seq2  TCAGTGGAGAATTC  1106