BAC Information

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BAC

Clone NameB6Ng01-349L20
Chromosome11 (Build37)
Map Location 100,917,813 - 100,978,805
singlet/doubletdoublet
Overlap geneAtp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik
Upstream geneKrt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf
Downstream geneTubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349L20.bB6Ng01-349L20.g
ACCGA130643GA130644
length1,1031,140
definitionB6Ng01-349L20.b B6Ng01-349L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,977,676 - 100,978,805)(100,917,813 - 100,918,969)
sequence
gaattccatgtggtagggtgccaccatgtatttccagggtgtcccctccc
aggtaccagagaaatcagggtgaccctgtccaaaatcttgtaacccacat
cgcttctagcccctgctctgttgctgtctttagaataataatggcttccc
tctaaaagccgactttttcattaatctcaccccatctgcagatgagtgac
ccacagggagaccatgaaagtcggcaggagggcatcatggcaggaccaga
aaaggacaggttccaggaacttcgattggactgataggagatgggggagc
acgagggtaaagccccgctggccctaacttgatgaacagcacagagctca
cagggggctatagactggagctccttgtccctgtgattccaggtggcctt
tggggacatgagcgtaactcgcagctgatgccctgttacctcttgggaac
tgtttcacagtcaccaatctcaccagtgttaactcttctttacttggagg
ggtctgtgagaatggataatggtttttcttcctaaacaaaactaaaagtg
atctgagaagtgattaaaggtatacaacagttctcatttacaaagttaga
atccaacaacaacaaaaaaaggaaatggaagggagagcgcgtaccacccc
ccatcccccttatttttccctaaggataggatttctctgtgtagccctgg
ctgttctggaatgctggatctgtagaccaggctggcctcgaaactcagag
acccacctgccttttatcttacaactgctgggattaaaggtgggcaacac
cactcttcttcctcttttttcctcctcttctcctttttttgttttttgtt
ttttgttttttttttttttgagacagggtttctctgtgtagccctggctt
gtcctgggaactcactctgtagaccaggctggcttggaacctcagaaatc
cacctgcttctgcctccaagtgctgggattaaagtgtgcgccaccaccac
ctgtttcctctctccctctgatggagttctggagcgtctgaagtaacatc
ttagatataggtttcttgatgacagaatcgtcacgaaactattcttcagg
aaa
gaattctttagtaatacaggatgttcagttagattgagtttcagataaat
agtgaatataatttttgtatgaattctcctaaaggccaggaagcctgtgt
tttgctagcagccctgcctcagactctgcctctttggggctccatttacc
ccttggtgctgtgttccccatttcaggaaagggttaatcccagcatcctg
ggaagctctagttgaccccacactgtgaagggatcacaaactcagaaagc
cctggctgaggtggtgtgggtgatctccgttccaggagggctttgcacag
ccctgacctgagaagccttgcctctgtgaccctcatcttcctctcctggc
ttgcattgcaagtttaagatcctgtgcctggctgtaccaggctatgggga
gacttgctgcatgttagaggcgggctgtagtcctccctccatagctgctt
tagaaggcctgtgctgctgtgtcagcagaagctgctgtctcttgagctgg
ccctctctgagccggccctctcctcctggctcctcttctctgcacccagt
ggtttgtttactgtaagcctgggaggttgggagtgctgcgtgctttcagc
tgccggcttggcaccctctcttcagtttatcagccagcacgctccactcc
gcagcatacctccccagccactccagtaaggagtgtctgtgtaacgagcc
ccccgccctgtgactcactttttcttgtcctcttgaccccctttgctttc
atgttcccatctgtgtctccagagctgatctgaggagagagcgcctacct
ctcattagttcctgcctgtgttaaagcctggtttgccttcctatgctggg
cacggtgaggagccatgaagcttggatcagaaccatcaggcagaccaaca
aggcagggcgcctgttctgaggaggttgcctggccctgggtctcatgttt
atcagagctgaggcagttggggtgctatgtttttattgccagacgtcatg
attgcagctttacctttggcctttagtgacgtgttgcctttctcactctc
taaagacgtggagccgtagccgtaggtgaagtagctctgaacacgtgtct
ctggcagctgatcctgacttctgaacatgaacttgatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100977676_100978805
seq2: B6Ng01-349L20.b_50_1152 (reverse)

seq1  TTTCCTGAAGAATAAATGTCTCTGTTGAAACGGGTTTTCCTTGTCATTTA  50
      ||||||||||||||   || ||    |  |||    |||  ||||||   
seq2  TTTCCTGAAGAATA---GTTTC----GTGACG---ATTC--TGTCAT---  35

seq1  AAGGAAAACTATAATCTTAAGATGTTTACTTTTCAGAACGCTCCAGAACT  100
       | |||| |||| ||| ||||||| ||||  ||||| |||||||||||||
seq2  CAAGAAACCTAT-ATC-TAAGATG-TTAC--TTCAG-ACGCTCCAGAACT  79

seq1  CATTAAAGAGGGAGAGGAGGAAAACAGGGTGGTGGTGGCGCACACCTTTA  150
      |  |  ||||||||| |||| ||||| ||||||||||||||||| |||||
seq2  CCAT-CAGAGGGAGA-GAGG-AAACA-GGTGGTGGTGGCGCACA-CTTTA  124

seq1  ATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGA-GTTCAAGGCC  199
      |||||||||||| ||||||||| |||||||||||||||| |||| | |||
seq2  ATCCCAGCACTT-GGAGGCAGAAGCAGGTGGATTTCTGAGGTTCCAAGCC  173

seq1  AGCCTGGTCTACAGAGTGAGTT-CCAGGAC-AGCCAGGGCTACACAGAGA  247
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  AGCCTGGTCTACAGAGTGAGTTCCCAGGACAAGCCAGGGCTACACAGAGA  223

seq1  AACCCTGTCTCAAAAAAAAAAAAAACAAAAAAACAAAAAAACAAAAAAAA  297
      |||||||||||||||||||||||||| |||||||||||||   |||||||
seq2  AACCCTGTCTCAAAAAAAAAAAAAAC-AAAAAACAAAAAA--CAAAAAAA  270

seq1  GGAGAAGAGGAGGAAAAAAGAGGAAGAAGAGTGGTGTTGCCCACCTTTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAGGAGGAAAAAAGAGGAAGAAGAGTGGTGTTGCCCACCTTTAA  320

seq1  TCCCAGCAGTTGTAAGATAAAAGGCAGGTGGGTCTCTGAGTTTCGAGGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCAGTTGTAAGATAAAAGGCAGGTGGGTCTCTGAGTTTCGAGGCC  370

seq1  AGCCTGGTCTACAGATCCAGCATTCCAGAACAGCCAGGGCTACACAGAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTACAGATCCAGCATTCCAGAACAGCCAGGGCTACACAGAGA  420

seq1  AATCCTATCCTTAGGGAAAAATAAGGGGGATGGGGGGTGGTACGCGCTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTATCCTTAGGGAAAAATAAGGGGGATGGGGGGTGGTACGCGCTCT  470

seq1  CCCTTCCATTTCCTTTTTTTGTTGTTGTTGGATTCTAACTTTGTAAATGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCATTTCCTTTTTTTGTTGTTGTTGGATTCTAACTTTGTAAATGA  520

seq1  GAACTGTTGTATACCTTTAATCACTTCTCAGATCACTTTTAGTTTTGTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTTGTATACCTTTAATCACTTCTCAGATCACTTTTAGTTTTGTTT  570

seq1  AGGAAGAAAAACCATTATCCATTCTCACAGACCCCTCCAAGTAAAGAAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAAACCATTATCCATTCTCACAGACCCCTCCAAGTAAAGAAGA  620

seq1  GTTAACACTGGTGAGATTGGTGACTGTGAAACAGTTCCCAAGAGGTAACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACACTGGTGAGATTGGTGACTGTGAAACAGTTCCCAAGAGGTAACA  670

seq1  GGGCATCAGCTGCGAGTTACGCTCATGTCCCCAAAGGCCACCTGGAATCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCAGCTGCGAGTTACGCTCATGTCCCCAAAGGCCACCTGGAATCA  720

seq1  CAGGGACAAGGAGCTCCAGTCTATAGCCCCCTGTGAGCTCTGTGCTGTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAAGGAGCTCCAGTCTATAGCCCCCTGTGAGCTCTGTGCTGTTC  770

seq1  ATCAAGTTAGGGCCAGCGGGGCTTTACCCTCGTGCTCCCCCATCTCCTAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTTAGGGCCAGCGGGGCTTTACCCTCGTGCTCCCCCATCTCCTAT  820

seq1  CAGTCCAATCGAAGTTCCTGGAACCTGTCCTTTTCTGGTCCTGCCATGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAATCGAAGTTCCTGGAACCTGTCCTTTTCTGGTCCTGCCATGAT  870

seq1  GCCCTCCTGCCGACTTTCATGGTCTCCCTGTGGGTCACTCATCTGCAGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCTGCCGACTTTCATGGTCTCCCTGTGGGTCACTCATCTGCAGAT  920

seq1  GGGGTGAGATTAATGAAAAAGTCGGCTTTTAGAGGGAAGCCATTATTATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGATTAATGAAAAAGTCGGCTTTTAGAGGGAAGCCATTATTATT  970

seq1  CTAAAGACAGCAACAGAGCAGGGGCTAGAAGCGATGTGGGTTACAAGATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGACAGCAACAGAGCAGGGGCTAGAAGCGATGTGGGTTACAAGATT  1020

seq1  TTGGACAGGGTCACCCTGATTTCTCTGGTACCTGGGAGGGGACACCCTGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAGGGTCACCCTGATTTCTCTGGTACCTGGGAGGGGACACCCTGG  1070

seq1  AAATACATGGTGGCACCCTACCACATGGAATTC  1130
      |||||||||||||||||||||||||||||||||
seq2  AAATACATGGTGGCACCCTACCACATGGAATTC  1103

seq1: chr11_100917813_100918969
seq2: B6Ng01-349L20.g_70_1209

seq1  GAATTCTTTAGTAATACAGGATGTTCAGTTAGATTGAGTTTCAGATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGTAATACAGGATGTTCAGTTAGATTGAGTTTCAGATAAAT  50

seq1  AGTGAATATAATTTTTGTATGAATTCTCCTAAAGGCCAGGAAGCCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATATAATTTTTGTATGAATTCTCCTAAAGGCCAGGAAGCCTGTGT  100

seq1  TTTGCTAGCAGCCCTGCCTCAGACTCTGCCTCTTTGGGGCTCCATTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGCAGCCCTGCCTCAGACTCTGCCTCTTTGGGGCTCCATTTACC  150

seq1  CCTTGGTGCTGTGTTCCCCATTTCAGGAAAGGGTTAATCCCAGCATCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTGCTGTGTTCCCCATTTCAGGAAAGGGTTAATCCCAGCATCCTG  200

seq1  GGAAGCTCTAGTTGACCCCACACTGTGAAGGGATCACAAACTCAGAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTCTAGTTGACCCCACACTGTGAAGGGATCACAAACTCAGAAAGC  250

seq1  CCTGGCTGAGGTGGTGTGGGTGATCTCCGTTCCAGGAGGGCTTTGCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGAGGTGGTGTGGGTGATCTCCGTTCCAGGAGGGCTTTGCACAG  300

seq1  CCCTGACCTGAGAAGCCTTGCCTCTGTGACCCTCATCTTCCTCTCCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACCTGAGAAGCCTTGCCTCTGTGACCCTCATCTTCCTCTCCTGGC  350

seq1  TTGCATTGCAAGTTTAAGATCCTGTGCCTGGCTGTACCAGGCTATGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTGCAAGTTTAAGATCCTGTGCCTGGCTGTACCAGGCTATGGGGA  400

seq1  GACTTGCTGCATGTTAGAGGCGGGCTGTAGTCCTCCCTCCATAGCTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCTGCATGTTAGAGGCGGGCTGTAGTCCTCCCTCCATAGCTGCTT  450

seq1  TAGAAGGCCTGTGCTGCTGTGTCAGCAGAAGCTGCTGTCTCTTGAGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGCCTGTGCTGCTGTGTCAGCAGAAGCTGCTGTCTCTTGAGCTGG  500

seq1  CCCTCTCTGAGCCGGCCCTCTCCTCCTGGCTCCTCTTCTCTGCACCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTGAGCCGGCCCTCTCCTCCTGGCTCCTCTTCTCTGCACCCAGT  550

seq1  GGTTTGTTTACTGTAAGCCTGGGAGGTTGGGAGTGCTGCGTGCTTTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTTACTGTAAGCCTGGGAGGTTGGGAGTGCTGCGTGCTTTCAGC  600

seq1  TGCCGGCTTGGCACCCTCTCTTCAGTTTATCAGCCAGCACGCTCCACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGCTTGGCACCCTCTCTTCAGTTTATCAGCCAGCACGCTCCACTCC  650

seq1  GCAGCATACCTCCCCAGCCACTCCAGTAAGGAGTGTCTGTGTAACGAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATACCTCCCCAGCCACTCCAGTAAGGAGTGTCTGTGTAACGAGCC  700

seq1  CCCCGCCCTGTGACTCACTTTTTCTTGTCCTCTTGACCCCCTTTGCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCCTGTGACTCACTTTTTCTTGTCCTCTTGACCCCCTTTGCTTTC  750

seq1  ATGTTCCCATCTGTGTCTCCAGAGCTGATCTGAGGAGAGAGCGCCTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCCATCTGTGTCTCCAGAGCTGATCTGAGGAGAGAGCGCCTACCT  800

seq1  CTCATTAGTTCCTGCCTGTGTTAAAGCCTGG-TTGCC-TCCTATGCTGGG  848
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  CTCATTAGTTCCTGCCTGTGTTAAAGCCTGGTTTGCCTTCCTATGCTGGG  850

seq1  CACGGTGAGGAGCCATGAAGCTTGGATCAGAACCATCAGGCAGACCAACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGAGGAGCCATGAAGCTTGGATCAGAACCATCAGGCAGACCAACA  900

seq1  AGGCAGGGGCGCCCTGTTCTGAGGAGGTTGCCTGGCCCTGGGTCTCATGT  948
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGCA-GGGCG-CCTGTTCTGAGGAGGTTGCCTGGCCCTGGGTCTCATGT  948

seq1  TTATCAGGAGCTGAGGCAGTTTGGGGTGCTATG-TTTTATTGCCAGAACG  997
      |||||| |||||||||||| ||||||||||||| |||||||||||| |||
seq2  TTATCA-GAGCTGAGGCAG-TTGGGGTGCTATGTTTTTATTGCCAG-ACG  995

seq1  TCCATGATTGCAGGCTTACCTTTGGCCTTTAAGTGACCGTG-TGCCTTCC  1046
      | |||||||||||  ||||||||||||||| ||||| |||| |||||| |
seq2  T-CATGATTGCAGCTTTACCTTTGGCCTTT-AGTGA-CGTGTTGCCTTTC  1042

seq1  TCCACTCTCCTAAAGGAACGTGGAGGCGTAGCGGTAGTGTGAAGTAGGCT  1096
      | |||||| ||||||  |||||||| |||||| |||| |||||||||   
seq2  T-CACTCT-CTAAAG--ACGTGGAGCCGTAGCCGTAG-GTGAAGTAG--C  1085

seq1  TCTGAGACAAACTGCCCTCACTGGCAGCTGATCCTGAGCTCTCTGAACAT  1146
      ||||| || |  ||   || ||||||||||||||||| || |||||||||
seq2  TCTGA-AC-ACGTG---TCTCTGGCAGCTGATCCTGA-CT-TCTGAACAT  1128

seq1  G-ACTTGGTCTT  1157
      | ||||| ||||
seq2  GAACTTGATCTT  1140