BAC Information

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BAC

Clone NameB6Ng01-350H06
Chromosome11 (Build37)
Map Location 106,791,659 - 106,889,574
singlet/doubletdoublet
Overlap geneLOC666873, Kpna2, 1810010H24Rik
Upstream geneCyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2
Downstream geneBptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350H06.bB6Ng01-350H06.g
ACCGA131117GA131118
length7861,030
definitionB6Ng01-350H06.b B6Ng01-350H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,888,791 - 106,889,574)(106,791,659 - 106,792,699)
sequence
ctggcgcaataggcctcccactcgtccgcgtccgcgctgcaggcgcgcgc
gcaggactgagtctctggctccctgtcctccggcgacagcgcctgcgggg
tcccagagggctgcgctgctgcgcgcggccggttcgggtgggcggggctg
gcggcgcgcgcgcccggaggtcgcacggcccgagagagcgcgcgccgcgg
agagtcctcgggcggggacgcgcggttctccgcctgcgcgaggcgcgggc
ccggaagcgccgcgggcgcgtgcactgcatcccggaagccggcgcggttg
tcggcgggcggcgcggtcttccggcgccgggggtcgggccaggcgcgcgg
tcctgcgtaggcggcacgcgggcggcgcgagaactcgggcagcggctgcg
cgcgtggccctggagtctcccgggagtcgggctttcggtgcggcggcggg
gctgcgggagaaagcgaggcgtgagcccaggggaggcgcgaggggagcag
aggggcgtcggagcgagcacctgctgtagctctacacgaaaggaccattg
cctgtagcaccaggcttcggcaggaggctggctgcgagttcgaggatgcc
tagactacggagtcaaactatcctaagaataaacaagtaaatccaacatt
agtactaagaggacattatattgttaagaaactttaactatagcttttca
aagtacggtcttctatttattctagagccaaacagttcagtggcatttgg
ttaaacaccctataccctacgcgcgcgcgcgtcaca
gaattcagagctaaaagaaaatgtaatttgaagagattgcatattttcca
aagccaatttggtgatttaagcatggaagcattacaatgaaatgtttgca
gagctatctgcgcgtgctgtgctgtaagccgatctcatgaagcaacacgt
cttttcgagatgaggtagcagcctcggcccccagggacagggagcagggc
atcactccgaggcaactactttggacaactgagctacatgagcagaccaa
aaggaagtcgtttccaatcatcttcaaaatacacactgtagtagctacaa
cacgaatctccaagggcaggggaggagatggggaaatatttgtgtgatgc
agtctttatgggtaatgcagagactatgggccagaatgagatcaacatga
ctcctaagctcatgtgtcaatgtcaaaccactgctttaaaaaaaaaaaac
aaacagtccctcagtggccgcttgtggccgcttttgccttttggatcctg
cccagtctgttttgagtgggattcttggcactacctggactcagcctccc
tcctcagctccatttcctcctcggctccacctaaagactcacatctttca
gattcctggctcatttctcttcttgccttcagatatctgccttccagtct
gtgtgccgtgtcagagcagaagagggcccaattgtgcatcttttacataa
tataattgactacttggtaggaatatttgagtatggattcatctgtttgt
atatttcttagaggtatgtcatttcggttaattgtggctaattaggataa
tcacaagaaagcctcttcctgggggctggagagatggctcagcggttaag
agcactgactgctcttctgaaggtcccgagtcatttcccagcaaccacat
ggtggctcacaaccattctgcaatgagatctgactccctcttctggagtg
tctgagacagctacagtgtacttactatatataataatcttaaaaaaaaa
aaagaagctctcatctgcattctctagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106888791_106889574
seq2: B6Ng01-350H06.b_50_835 (reverse)

seq1  TGTG-CGCGCGCGCGCGTAGGGTATA-GGTGTTTAACC-AATGCCACCTG  47
      |||| ||||||||||||||||||||| ||||||||||| ||||||| |||
seq2  TGTGACGCGCGCGCGCGTAGGGTATAGGGTGTTTAACCAAATGCCA-CTG  49

seq1  AACTGTTTGGCTCTAGAATAAATAGAAGACCGTACTTTGAAAAGCTATAG  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTGGCTCTAGAATAAATAGAAGACCGTACTTTGAAAAGCTATAG  99

seq1  TTAAAGTTTCTTAACAATATAATGTCCTCTTAGTACTAATGTTGGATTTA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTTCTTAACAATATAATGTCCTCTTAGTACTAATGTTGGATTTA  149

seq1  CTTGTTTATTCTTAGGATAGTTTGACTCCGTAGTCTAGGCTTCCTCGAAC  197
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTGTTTATTCTTAGGATAGTTTGACTCCGTAGTCTAGGCATCCTCGAAC  199

seq1  TCGCAGCCAGCCTCCTGCCGAAGCCTGGTGCTACAGGCAATGGTCCTTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGCCAGCCTCCTGCCGAAGCCTGGTGCTACAGGCAATGGTCCTTTC  249

seq1  GTGTAGAGCTACAGCAGGTGCTCGCTCCGACGCCCCTCTGCTCCCCTCGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAGCTACAGCAGGTGCTCGCTCCGACGCCCCTCTGCTCCCCTCGC  299

seq1  GCCTCCCCTGGGCTCACGCCTCGCTTTCTCCCGCAGCCCCGCCGCCGCAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCCTGGGCTCACGCCTCGCTTTCTCCCGCAGCCCCGCCGCCGCAC  349

seq1  CGAAAGCCCGACTCCCGGGAGACTCCAGGGCCACGCGCGCAGCCGCTGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGCCCGACTCCCGGGAGACTCCAGGGCCACGCGCGCAGCCGCTGCC  399

seq1  CGAGTTCTCGCGCCGCCCGCGTGCCGCCTACGCAGGACCGCGCGCCTGGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTCTCGCGCCGCCCGCGTGCCGCCTACGCAGGACCGCGCGCCTGGC  449

seq1  CCGACCCCCGGCGCCGGAAGACCGCGCCGCCCGCCGACAACCGCGCCGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCCCCGGCGCCGGAAGACCGCGCCGCCCGCCGACAACCGCGCCGGC  499

seq1  TTCCGGGATGCAGTGCACGCGCCCGCGGCGCTTCCGGGCCCGCGCCTCGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGGATGCAGTGCACGCGCCCGCGGCGCTTCCGGGCCCGCGCCTCGC  549

seq1  GCAGGCGGAGAACCGCGCGTCCCCGCCCGAGGACTCTCCGCGGCGCGCGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCGGAGAACCGCGCGTCCCCGCCCGAGGACTCTCCGCGGCGCGCGC  599

seq1  TCTCTCGGGCCGTGCGACCTCCGGGCGCGCGCGCCGCCAGCCCCGCCCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCGGGCCGTGCGACCTCCGGGCGCGCGCGCCGCCAGCCCCGCCCAC  649

seq1  CCGAACCGGCCGCGCGCAGCAGCGCAGCCCTCTGGGACCCCGCAGGCGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAACCGGCCGCGCGCAGCAGCGCAGCCCTCTGGGACCCCGCAGGCGCT  699

seq1  GTCGCCGGAGGACAGGGAGCCAGAGACTCAGTCCTGCGCGCGCGCCTGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCGGAGGACAGGGAGCCAGAGACTCAGTCCTGCGCGCGCGCCTGCA  749

seq1  GCGCGGACGCGGACGAGTGGGAGGCCTATTGCGCCAG  784
      |||||||||||||||||||||||||||||||||||||
seq2  GCGCGGACGCGGACGAGTGGGAGGCCTATTGCGCCAG  786

seq1: chr11_106791659_106792699
seq2: B6Ng01-350H06.g_68_1097

seq1  GAATTCAGAGCTAAAAGAAAATGTAATTTGAAGAGATTGCATATTTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCTAAAAGAAAATGTAATTTGAAGAGATTGCATATTTTCCA  50

seq1  AAGCCAATTTGGTGATTTAAGCATGGAAGCATTACAATGAAATGTTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAATTTGGTGATTTAAGCATGGAAGCATTACAATGAAATGTTTGCA  100

seq1  GAGCTATCTGCGCGTGCTGTGCTGTAAGCCGATCTCATGAAGCAACACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATCTGCGCGTGCTGTGCTGTAAGCCGATCTCATGAAGCAACACGT  150

seq1  CTTTTCGAGATGAGGTAGCAGCCTCGGCCCCCAGGGACAGGGAGCAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCGAGATGAGGTAGCAGCCTCGGCCCCCAGGGACAGGGAGCAGGGC  200

seq1  ATCACTCCGAGGCAACTACTTTGGACAACTGAGCTACATGAGCAGACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCCGAGGCAACTACTTTGGACAACTGAGCTACATGAGCAGACCAA  250

seq1  AAGGAAGTCGTTTCCAATCATCTTCAAAATACACACTGTAGTAGCTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTCGTTTCCAATCATCTTCAAAATACACACTGTAGTAGCTACAA  300

seq1  CACGAATCTCCAAGGGCAGGGGAGGAGATGGGGAAATATTTGTGTGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAATCTCCAAGGGCAGGGGAGGAGATGGGGAAATATTTGTGTGATGC  350

seq1  AGTCTTTATGGGTAATGCAGAGACTATGGGCCAGAATGAGATCAACATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTATGGGTAATGCAGAGACTATGGGCCAGAATGAGATCAACATGA  400

seq1  CTCCTAAGCTCATGTGTCAATGTCAAACCACTGCTTTAAAAAAAAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAGCTCATGTGTCAATGTCAAACCACTGCTTTAAAAAAAAAAAAC  450

seq1  AAACAGTCCCTCAGTGGCCGCTTGTGGCCGCTTTTGCCTTTTGGATCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTCCCTCAGTGGCCGCTTGTGGCCGCTTTTGCCTTTTGGATCCTG  500

seq1  CCCAGTCTGTTTTGAGTGGGATTCTTGGCACTACCTGGACTCAGCCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTGTTTTGAGTGGGATTCTTGGCACTACCTGGACTCAGCCTCCC  550

seq1  TCCTCAGCTCCATTTCCTCCTCGGCTCCACCTAAAGACTCACATCTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCTCCATTTCCTCCTCGGCTCCACCTAAAGACTCACATCTTTCA  600

seq1  GATTCCTGGCTCATTTCTCTTCTTGCCTTCAGATATCTGCCTTCCAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGGCTCATTTCTCTTCTTGCCTTCAGATATCTGCCTTCCAGTCT  650

seq1  GTGTGCCGTGTCAGAGCAGAAGAGGGCCCAATTGTGCATCTTTTACATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCGTGTCAGAGCAGAAGAGGGCCCAATTGTGCATCTTTTACATAA  700

seq1  TATAATTGACTACTTGGTAGGAATATTTGAGTATGGATTCATCTGTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTGACTACTTGGTAGGAATATTTGAGTATGGATTCATCTGTTTGT  750

seq1  ATATTTCTTAGAGGTATGTCATTTCGGTTAATTGTGGCTAATTAGGATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTTAGAGGTATGTCATTTCGGTTAATTGTGGCTAATTAGGATAA  800

seq1  TCACAAGAAAGCCTCTTCCTGGGGGCTGGAGAGATGGCTCAGCGGTTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGAAAGCCTCTTCCTGGGGGCTGGAGAGATGGCTCAGCGGTTAAG  850

seq1  AGCACTGACTGCTCTTCTGAAGGTCCCGAGTTCAATTCCCAGCAACCACA  900
      |||||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  AGCACTGACTGCTCTTCTGAAGGTCCCGAG-TCATTTCCCAGCAACCACA  899

seq1  TGGTGGCTCACAACCA-TCTGCAATGAGATCTGACTCCCTCTTCTGGAGT  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGTGGCTCACAACCATTCTGCAATGAGATCTGACTCCCTCTTCTGGAGT  949

seq1  GTCTGAAGACAGCTACAGTGTACTTACT-TATATAATAAATAAATCTTAA  998
      ||||| |||||||||||||||||||||| ||||||||     |||||| |
seq2  GTCTG-AGACAGCTACAGTGTACTTACTATATATAAT-----AATCTT-A  992

seq1  AAAAAAAAAAAGAAAGCCTCTTCCATCTGCATTCTCCTAGATT  1041
      ||||||||||||||   ||||  |||||||||||| |||||||
seq2  AAAAAAAAAAAGAA--GCTCT--CATCTGCATTCT-CTAGATT  1030