BAC Information

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BAC

Clone NameB6Ng01-350L18
Chromosome11 (Build37)
Map Location 5,331,005 - 5,332,145
singlet/doubletsinglet
Overlap geneZnrf3
Upstream geneHormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, LOC100042016
Downstream geneLOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350L18.bB6Ng01-350L18.g
ACCGA131322GA131323
length1,1341,168
definitionB6Ng01-350L18.b B6Ng01-350L18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttttgcatacttgacagcattaaattaattttcttttgcaag
cttgttttaaattatctttttgtaaatctggggatgatctatattgactt
tccgattaatgtgtattttacattttggggtaaatggagaatctcttata
tctaatgttatgactatccctccccctcccccatatccttgtcctctggt
accactaatctagtgattactgattggagagagggaatagaacaagagga
agggtagatgggctctgcccctcactgctccttattctcatttcttccct
tacctcctgtaccaggaggccttctagctttctgttcttatgtatgagca
ttccaccaagtagttggaatgcttttgttgtttcttttgagctagggtct
cactctagtctggtctggcctgtaattcactatgcaacccagggtggcct
tgcatgttgatcctcttgcctcagcctgcctagctgggttcacagaactc
tccaaccaggtctggctatacatgggatcttattttttcctgcccttagc
tgttgggaaagctggtatttgggataaactacaaagcagatggtgtccta
catggtacttcatgtcagagagagattgatcaggcctaggaagccagata
gaatccaagagtgcaggtagggaataggtttgctggtgccagttttatgt
agcacctctcttcaagaggcctgacagccactggaggctataccctgtcc
aggttcaacagcccaggcagtttgtagtgtggaggcctttgtcctcaagt
ctcatcactgcttggattaaccacacataatctttgctttgttataacag
agtctactctgacactatattagaatgaaacacccttcccaaagggcctc
tgggaagattacaagaagctattttgggtttaggatgaggacagatgtgc
agaacatccattaatgttgtgcagtgctcaaggctgagtgccctttgaaa
tgtctctgtccctgtggggtgttgttgcactgtctaatacgttgtacttc
aagtctgcttgttgcttctgattctgaggttctttctagaacaggaaacc
atgttaaatgaggacctagaacccaaggaatgtc
gaattcaatgaaaatgaataccaacagacaacatactcaaactttttttt
tttttttaagtatagaatagaatttatttagggcatggggaggggagtta
agagggtagtagaggcagagaaaggcagagagagggagtgagaagcaaag
tagaggccggccatggccacatggagagagagggaagaagggaaggggaa
aggaaagagtccaagagggcaagagagaaacaagcgggagcaggaataag
agccaacatactcaaacttatgcaacacaaggaaagtggtgttaagagga
aagtgtgtagcactaagtgtttacatataaaaattggagcgatctcatac
tagtgacgtagccgcacacctgaaagctctagaacaaaaagaagcaagca
taagcatgaagagtggatagcaaataaactaatcactaaaatcagtaagc
aagaaacaaaaagaacaatacaaagattcaatgacacaaagagtttgttc
attgaggaggggggaatcaacaagatagacaaatccttatccaaacaaac
taaaaggtagagaaagaatatccaaatcaacaaaatcagaaatgaaaaaa
aaggcaacataacaacagacactgagggaatgcaaagaatcattaggtca
tacattaaaaatctgtactccacaaaattgtaaaacctaaaaataaatgg
ataatttccttgatagattccatttcccaaaattaagtgagatgagaaac
ccaatttaaatagacctataaccccataaagaaagagaagcagtcattga
aagttttccaatcacaaaaagcccaaggtagacagttttagtgaagaatt
ctatcagactttcaaagaagagggtaacaacttattacctcctcaaatta
gtccaaaaaagaggaaacaaaagaaacactgatgcattgtattgggaacc
taataaaatgtccatgcagtcctattccattatgggaacagatacggacc
atggtaaattttttggagggtcaccacctccaccctgatgccaactagca
tggaattacgatagaatcctcctcatggaacctagatgcgactacttata
aaattccgtactggatctatgcccacgttgataggatcatccccatggga
ttcaggttggacttccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_5331005_5332145
seq2: B6Ng01-350L18.b_47_1180 (reverse)

seq1  GACATTCCCCTTGGTGTCTAGTTCCTCATTTTACATGGTTTCCTGGTTTT  50
      ||||||  ||||||  ||||| ||||||||| |||||||||||||   ||
seq2  GACATT--CCTTGGGTTCTAGGTCCTCATTTAACATGGTTTCCTG---TT  45

seq1  CTAGGAAGGAACCTCAGAAATCAGAAGCAACAAAGCAGACTTGGAAGTAA  100
      ||| ||| ||||||||| ||||||||||||| |||||||||| ||||| |
seq2  CTA-GAAAGAACCTCAG-AATCAGAAGCAAC-AAGCAGACTT-GAAGT-A  90

seq1  CAACGTA-TAGACAGGTGCACCAACA-CCCACAGGGACAGAGACATTTC-  147
      ||||||| |||||| ||||| ||||| |||||||||||||||||||||| 
seq2  CAACGTATTAGACA-GTGCAACAACACCCCACAGGGACAGAGACATTTCA  139

seq1  AAGGGCACTCAGCC-TGAGCACTGCACAACATTAATGGATGTTCTGCACA  196
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGGGCACTCAGCCTTGAGCACTGCACAACATTAATGGATGTTCTGCACA  189

seq1  TCTGTCCTCATCCTAAACCCAAAATAGCTTCTTGTAATCTTCCCAGAGGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTCATCCTAAACCCAAAATAGCTTCTTGTAATCTTCCCAGAGGC  239

seq1  CCTTTGGGAAGGGTGTTTCATTCTAATATAGTGTCAGAGTAGACTCTGTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGAAGGGTGTTTCATTCTAATATAGTGTCAGAGTAGACTCTGTT  289

seq1  ATAACAAAGCAAAGATTATGTGTGGTTAATCCAAGCAGTGATGAGACTTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAGCAAAGATTATGTGTGGTTAATCCAAGCAGTGATGAGACTTG  339

seq1  AGGACAAAGGCCTCCACACTACAAACTGCCTGGGCTGTTGAACCTGGACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAAGGCCTCCACACTACAAACTGCCTGGGCTGTTGAACCTGGACA  389

seq1  GGGTATAGCCTCCAGTGGCTGTCAGGCCTCTTGAAGAGAGGTGCTACATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATAGCCTCCAGTGGCTGTCAGGCCTCTTGAAGAGAGGTGCTACATA  439

seq1  AAACTGGCACCAGCAAACCTATTCCCTACCTGCACTCTTGGATTCTATCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGCACCAGCAAACCTATTCCCTACCTGCACTCTTGGATTCTATCT  489

seq1  GGCTTCCTAGGCCTGATCAATCTCTCTCTGACATGAAGTACCATGTAGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTAGGCCTGATCAATCTCTCTCTGACATGAAGTACCATGTAGGA  539

seq1  CACCATCTGCTTTGTAGTTTATCCCAAATACCAGCTTTCCCAACAGCTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTGCTTTGTAGTTTATCCCAAATACCAGCTTTCCCAACAGCTAA  589

seq1  GGGCAGGAAAAAATAAGATCCCATGTATAGCCAGACCTGGTTGGAGAGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAAAAAATAAGATCCCATGTATAGCCAGACCTGGTTGGAGAGTT  639

seq1  CTGTGAACCCAGCTAGGCAGGCTGAGGCAAGAGGATCAACATGCAAGGCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAACCCAGCTAGGCAGGCTGAGGCAAGAGGATCAACATGCAAGGCC  689

seq1  ACCCTGGGTTGCATAGTGAATTACAGGCCAGACCAGACTAGAGTGAGACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGGTTGCATAGTGAATTACAGGCCAGACCAGACTAGAGTGAGACC  739

seq1  CTAGCTCAAAAGAAACAACAAAAGCATTCCAACTACTTGGTGGAATGCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCAAAAGAAACAACAAAAGCATTCCAACTACTTGGTGGAATGCTC  789

seq1  ATACATAAGAACAGAAAGCTAGAAGGCCTCCTGGTACAGGAGGTAAGGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAGAACAGAAAGCTAGAAGGCCTCCTGGTACAGGAGGTAAGGGA  839

seq1  AGAAATGAGAATAAGGAGCAGTGAGGGGCAGAGCCCATCTACCCTTCCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAGAATAAGGAGCAGTGAGGGGCAGAGCCCATCTACCCTTCCTC  889

seq1  TTGTTCTATTCCCTCTCTCCAATCAGTAATCACTAGATTAGTGGTACCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTATTCCCTCTCTCCAATCAGTAATCACTAGATTAGTGGTACCAG  939

seq1  AGGACAAGGATATGGGGGAGGGGGAGGGATAGTCATAACATTAGATATAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGGATATGGGGGAGGGGGAGGGATAGTCATAACATTAGATATAA  989

seq1  GAGATTCTCCATTTACCCCAAAATGTAAAATACACATTAATCGGAAAGTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTCCATTTACCCCAAAATGTAAAATACACATTAATCGGAAAGTC  1039

seq1  AATATAGATCATCCCCAGATTTACAAAAAGATAATTTAAAACAAGCTTGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGATCATCCCCAGATTTACAAAAAGATAATTTAAAACAAGCTTGC  1089

seq1  AAAAGAAAATTAATTTAATGCTGTCAAGTATGCAAAAGAGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAATTAATTTAATGCTGTCAAGTATGCAAAAGAGAATTC  1134