BAC Information

Click to search

BAC

Clone NameB6Ng01-350P07
Chromosome11 (Build37)
Map Location 50,435,941 - 50,569,910
singlet/doubletdoublet
Overlap geneAdamts2
Upstream geneFlt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
Downstream geneZfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350P07.bB6Ng01-350P07.g
ACCGA131474GA131475
length885886
definitionB6Ng01-350P07.b B6Ng01-350P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,569,027 - 50,569,910)(50,435,941 - 50,436,827)
sequence
gaattcactcgccgccatctcccactgaagcatggagctccttccagaag
gaatgagagctgttgtcagagcagaagccactcctggctgttgctgctcg
gtgggaaatgttacccgtgcacgtgctacaatccacacttgtatcccaca
accccgcacccatgcattcaatcaacccaggtcaaaattatttggagaaa
agttggcagaaaatgtatagactccccccccccccttctaagcaatagaa
cggcacttgtgtgttatgaagcactgtaagtaatatagattacttgatgt
atgtgggagagtgtgtgtaggttaaacccaaatgacacacatattacccc
agcgatctggatacttgagagggtcctgcaccagagctctgtggatgctg
aaggattctgcaggatgctgcagttgaagatgtggaccatttggaccatg
attaactctactttcatcccattagtgagagcagttatcatcactaggtc
tcttgccccacccacttaccttgttccatgtcatgcctgtcattgtcttc
tttcacattttgagtactattttatttttgtgtactttttaaaaatatat
tattctgggtcatgtccgaagccgggtggtggtgcacgcctttaatccca
gcacttgggaggcagaagcaggagtccaaggccagcctggtctacatagt
gggctccaggacagccagggctacgcagagaaaccctgtctcacacacac
acacacacacacacacacacacacacacacacacacacacacacacactc
acttcttagcagcatctgtaggcctcctcagatatccacaccacaaaagg
atgtgtgtgtagggtgtggggggagatgacttccc
gaattcctgggtcagagtaaggagagcagatgtttactagaagacgccaa
ggacggctgacatcacccagggcccccaggacacgggaagaggccggggt
cctccatccctccgcgccaaggagcattcctggggcaggcgccagggctg
gggggtggacatgcacacagatgcaggcgccacacaccagtcctcgccac
ctgaacacaattagtcaagatgtggaaacgatttcaatcttgaaaggaga
gaggagtggctggccggacagactcctcagtgtggattggtcctttgcag
aattgcaggagtggcctttgtggcgggtgagctgttgggagtccctggcc
agggatggagacgaccattgtcatgtctctctcccttccatggacacaag
ccatcctttaatatctactttaggggtggaactggaagaggagttgcttc
cattctttcctttacacctctgcagcctgttcctcaccaaaagctgtccc
caggctcagattcgtgtgacaacaagccacagaaaacctagtgtaaatca
gctcgggccaaaagcctccatcttgtattactttgccttctcccctgtgt
ggcctgcctcgacagctcacctgtgccacttggcaccaccagagcacaca
gaggctggccttttccatcagattgtactgtagactctaaagctggttcc
atgggttcagtttgggtcatcggtagaggtttgagcatcaacactgtggc
tgaggcagggagcagagctttggttggtcaaataggccacatgactgttt
cgggtggggtttgctgtctgaacctcaggagctgaggcaaggaggctctg
aggagggtgtctcgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50569027_50569910
seq2: B6Ng01-350P07.b_51_935 (reverse)

seq1  GGGAAGTCATCTCCCCCCACACCCTACACACACATCCTTTTGTGGTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTCATCTCCCCCCACACCCTACACACACATCCTTTTGTGGTGTGG  50

seq1  ATATCTGAGGAGGCCTACAGATGCCTGCTAAGAAGT--GTGTGTGTGTGT  98
      ||||||||||||||||||||||| ||||||||||||  ||||||||||||
seq2  ATATCTGAGGAGGCCTACAGATG-CTGCTAAGAAGTGAGTGTGTGTGTGT  99

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGACA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGACA  149

seq1  GGGTTTCTCTGCGTAGCCCTGGCTGTCCTGGAGCCCACTATGTAGACCAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTCTGCGTAGCCCTGGCTGTCCTGGAGCCCACTATGTAGACCAG  199

seq1  GCTGGCCTTGGACTCCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGCG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTTGGACTCCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGCG  249

seq1  TGCACCACCACCCGGCTTCGGACATGACCCAGAATAATATATTTTTAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCACCACCCGGCTTCGGACATGACCCAGAATAATATATTTTTAAAA  299

seq1  AGTACACAAAAATAAAATAGTACTCAAAATGTGAAAGAAGACAATGACAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACAAAAATAAAATAGTACTCAAAATGTGAAAGAAGACAATGACAG  349

seq1  GCATGACATGGAACAAGGTAAGTGGGTGGGGCAAGAGACCTAGTGATGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACATGGAACAAGGTAAGTGGGTGGGGCAAGAGACCTAGTGATGAT  399

seq1  AACTGCTCTCACTAATGGGATGAAAGTAGAGTTAATCATGGTCCAAATGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTCTCACTAATGGGATGAAAGTAGAGTTAATCATGGTCCAAATGG  449

seq1  TCCACATCTTCAACTGCAGCATCCTGCAGAATCCTTCAGCATCCACAGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCTTCAACTGCAGCATCCTGCAGAATCCTTCAGCATCCACAGAG  499

seq1  CTCTGGTGCAGGACCCTCTCAAGTATCCAGATCGCTGGGGTAATATGTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTGCAGGACCCTCTCAAGTATCCAGATCGCTGGGGTAATATGTGT  549

seq1  GTCATTTGGGTTTAACCTACACACACTCTCCCACATACATCAAGTAATCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTGGGTTTAACCTACACACACTCTCCCACATACATCAAGTAATCT  599

seq1  ATATTACTTACAGTGCTTCATAACACACAAGTGCCGTTCTATTGCTTAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTTACAGTGCTTCATAACACACAAGTGCCGTTCTATTGCTTAGA  649

seq1  AGGGGGGGGGGGGAGTCTATACATTTTCTGCCAACTTTTCTCCAAATAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGGGGGGGAGTCTATACATTTTCTGCCAACTTTTCTCCAAATAAT  699

seq1  TTTGACCTGGGTTGATTGAATGCATGGGTGCGGGGTTGTGGGATACAAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTGGGTTGATTGAATGCATGGGTGCGGGGTTGTGGGATACAAGT  749

seq1  GTGGATTGTAGCACGTGCACGGGTAACATTTCCCACCGAGCAGCAACAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTGTAGCACGTGCACGGGTAACATTTCCCACCGAGCAGCAACAGC  799

seq1  CAGGAGTGGCTTCTGCTCTGACAACAGCTCTCATTCCTTCTGGAAGGAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTGGCTTCTGCTCTGACAACAGCTCTCATTCCTTCTGGAAGGAGC  849

seq1  TCCATGCTTCAGTGGGAGATGGCGGCGAGTGAATTC  884
      ||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTTCAGTGGGAGATGGCGGCGAGTGAATTC  885

seq1: chr11_50435941_50436827
seq2: B6Ng01-350P07.g_70_955

seq1  GAATTCCTGGGTCAGAGTAAGGAGAGCAGATGTTTACTAGAAGACGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGTCAGAGTAAGGAGAGCAGATGTTTACTAGAAGACGCCAA  50

seq1  GGACGGCTGACATCACCCAGGGCCCCCAGGACACGGGAAGAGGCCGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGCTGACATCACCCAGGGCCCCCAGGACACGGGAAGAGGCCGGGGT  100

seq1  CCTCCATCCCTCCGCGCCAAGGAGCATTCCTGGGGCAGGCGCCAGGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATCCCTCCGCGCCAAGGAGCATTCCTGGGGCAGGCGCCAGGGCTG  150

seq1  GGGGGTGGACATGCACACAGATGCAGGCGCCACACACCAGTCCTCGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGACATGCACACAGATGCAGGCGCCACACACCAGTCCTCGCCAC  200

seq1  CTGAACACAATTAGTCAAGATGTGGAAACGATTTCAATCTTGAAAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACAATTAGTCAAGATGTGGAAACGATTTCAATCTTGAAAGGAGA  250

seq1  GAGGAGTGGCTGGCCGGACAGACTCCTCAGTGTGGATTGGTCCTTTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTGGCTGGCCGGACAGACTCCTCAGTGTGGATTGGTCCTTTGCAG  300

seq1  AATTGCAGGAGTGGCCTTTGTGGCGGGTGAGCTGTTGGGAGTCCCTGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAGGAGTGGCCTTTGTGGCGGGTGAGCTGTTGGGAGTCCCTGGCC  350

seq1  AGGGATGGAGACGACCATTGTCATGTCTCTCTCCCTTCCATGGACACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGAGACGACCATTGTCATGTCTCTCTCCCTTCCATGGACACAAG  400

seq1  CCATCCTTTAATATCTACTTTAGGGGTGGAACTGGAAGAGGAGTTGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTTAATATCTACTTTAGGGGTGGAACTGGAAGAGGAGTTGCTTC  450

seq1  CATTCTTTCCTTTACACCTCTGCAGCCTGTTCCTCACCAAAAGCTGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTCCTTTACACCTCTGCAGCCTGTTCCTCACCAAAAGCTGTCCC  500

seq1  CAGGCTCAGATTCGTGTGACAACAAGCCACAGAAAACCTAGTGTAAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCAGATTCGTGTGACAACAAGCCACAGAAAACCTAGTGTAAATCA  550

seq1  GCTCGGGCCAAAAGCCTCCATCTTGTATTACTTTGCCTTCTCCCCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGGCCAAAAGCCTCCATCTTGTATTACTTTGCCTTCTCCCCTGTGT  600

seq1  GGCCTGCCTCGACAGCTCACCTGTGCCACTTGGCACCACCAGAGCACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCCTCGACAGCTCACCTGTGCCACTTGGCACCACCAGAGCACACA  650

seq1  GAGGCTGGCCTTTTCCATCAGATTGTACTGTAGACTCTAAAGCTGGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGCCTTTTCCATCAGATTGTACTGTAGACTCTAAAGCTGGTTCC  700

seq1  ATGGGTTCAGTTTGGGTCATCGGTAGAGGTTTGAGCATCAACACTGTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTCAGTTTGGGTCATCGGTAGAGGTTTGAGCATCAACACTGTGGC  750

seq1  TGAGGCAGGGAGCAGAGCTTTGGTTGGTCAAATAGGCCACATGACTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGGGAGCAGAGCTTTGGTTGGTCAAATAGGCCACATGACTGTTT  800

seq1  CGGGTGGGGTTTGCTGTCTGAACCTCAGGGAGCTGAGGCAAGGAGGCTCT  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CGGGTGGGGTTTGCTGTCTGAACCTCA-GGAGCTGAGGCAAGGAGGCTCT  849

seq1  GAGGAGGGTGTCTCGTGTGTGTGTGTGTGTGTGTGTG  887
      |||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGTGTCTCGTGTGTGTGTGTGTGTGTGTGTG  886