CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
TAGAAATTGCTCTTGTGAACATCAAGGAGGGCAAGGAGGTGTGTGGAGCA
GTGAATCAGGGATCTCAGAAACAATGGACAGGGTCACAGGGGTAGTGCCT
GAAAGTGTTCCTCCAAGAAAGTAGACTGTGAATCAAATAAGCCACTCTAC
ACCTGCTCTTTGTATTGTCTGCCAAGTAGCAGAAACTCATGAATGGAACC
TAATTACTCTGTGCCTCTAAATTTTACTATTGGCTGAACTTATATTTCAC
ATTATATTGATAATAAGCTGAACAAGTGAGGATTTATTGATTAATTAATA
GTTTCCCAGATCAAGGAGCATAATATAATAATCCATTGTAGATTCAAAGG
CTATTAGATTATATCACAGATCTTAGATGTTAAGGTAAAATATTGATAAG
GGAAGAGTTTTGATTTCTTTTGTTGAAAGTTTAACTGTAACAATGGAGAT
ATTTTGGGTCATCATGAGAAGCAATTATATTTGAAAAGATTATAGTCATT
TTTTAAAAGTGTTTCTGCCATAATGAGGGGAGGTCATGAGACAAGGGATG
TACTGGGGAATACAGACTCCAGTTAAGACTCTCATCCTCTGCTAGGTGAC
CATTGTTATTCCAAAGAGTGCAAACTTCCATCAATA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGCTTCACTGATGTCAGACAAGGC
TATTCTCTGCTACGTATGTATCTGGAGCCATGGATGCCTCCCTGTAGACT
CCTTGGTTTGTGGTCTAGTCCCTGGGAACACTAAATATTACAGAGAAGGG
AGGCCCTTAATCCTGTGGAGGTTTGAAGCACCAGTGTAGGGGGCTGCTGG
AGGGGTGGAGTGGGAGAGAGTGAGTGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTCTTTTTTTTNNNNTNTNTTNNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTCTCTTTTNTNNTTTTTTTTTTTNTNTT
TTTTTTTTTTTTTTTTTTCTCCCCCTTTCTCTTTTTTNTCTTTCTTTTTT
CTTTCTTTTCTTTTCCTTTTTTTCTTTTTTCCCTTTTCCCTTCTCTTTTT
TCTTCTTCTCTTNTTTTCTTCCTTTTTTCTTTTCTCTCTCCTTTTTCCTT
TCCCCTTTTTCTTCTCTCTTTCCTCTTTTTTTTTTCTTTTCCTCTCTCTT
TTTTTTTTTTTCTCTTTTTCTTTTTCTCCCCCTTTCTTTTTCTCCCTCCT
TTTTTCTTTATTTTCTCTCTTTTTTTTTCTTTTTCTTTTTTCCTTTTTTC
TCTTCTTTCTCC

Query= MSMg01no045_p22.b1 MSMg01no045_p22.b1 CHROMAT_FILE:
MSMg01no045_p22.b1 PHD_FILE: MSMg01no045_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:05 2005
         (648 letters)



>mm_chr11_92602315_92603360
          Length = 1046

 Score = 1131 bits (585), Expect = 0.0
 Identities = 628/643 (97%), Gaps = 2/643 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattctagaaattgctcttgtgaacatcaaggagggcaaggaggtgtgtggagcagtg 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ggaattctagaaatttctcttgtgaacatcaaggagggcaaggaggtgtgtggagcagtg 787

                                                                       
Query: 66  aatcagggatctcagaaacaatggacagggtcacaggggtagtgcctgaaagtgttcctc 125
           |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 786 aatcagggatctcagaaacaatgggcagggtcacaagggtagtgcctgaaagtgttcctc 727

                                                                       
Query: 126 caagaaagtagactgtgaatcaaataagccactctacacctgctctttgtattgtctgcc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 caagaaagtagactgtgaatcaaataagccactctacacctgctctttgtattgtctgcc 667

                                                                       
Query: 186 aagtagcagaaactcatgaatggaacctaattactctgtgcctctaaattttactattgg 245
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aagtagcagaaactgatgaatggaacctaattactctgtgcctctaaattttactattgg 607

                                                                       
Query: 246 ctgaacttatatttcacattatattgataataagctgaacaagtgaggatttattgatta 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 606 ctgaacttatatttcacattatattgataataagctgaacaagtgaggatttattgacta 547

                                                                       
Query: 306 attaatagtttcccagatcaaggagcataatataataatccattgtagattcaaaggcta 365
           |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 546 attaatagtttcccagatcaaggagcataatataatgatccattgtggatgcaaaggcta 487

                                                                       
Query: 366 ttagattatatcacagatcttagatgttaaggtaaaatattgataagggaagagttttga 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttagattatatcacagatcttagatgttaaggtaaaatattgataagggaagagttttga 427

                                                                       
Query: 426 tttcttttgttgaaagtttaactgtaacaatggagatattttgggtcatcatgagaagca 485
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tttcttttgttgaaagtttaagtgtaacaatggagatattttgggtcatcatgagaagca 367

                                                                       
Query: 486 attatatttgaaaagattatagtcattttttaaaagtgtttctgccataatgaggggagg 545
           ||||| ||||||||||||| |||||||||||||  ||||||||||||||||||||||| |
Sbjct: 366 attatgtttgaaaagattacagtcattttttaa--gtgtttctgccataatgaggggaag 309

                                                                       
Query: 546 tcatgagacaagggatgtactggggaatacagactccagttaagactctcatcctctgct 605
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 308 tcatgagacaagggatgtactggggaatacagactccagttaagactttcatcctctgct 249

                                                      
Query: 606 aggtgaccattgttattccaaagagtgcaaacttccatcaata 648
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aggtgaccattgttattccaaagagtgcaaacttccatcaata 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1046
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1036
Effective search space:   660968
Effective search space used:   660968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)