Query= MSMg01no046_g13.b1 MSMg01no046_g13.b1 CHROMAT_FILE:
MSMg01no046_g13.b1 PHD_FILE: MSMg01no046_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:34 2005
(536 letters)
>mm_chr11_19423198_19424136
Length = 939
Score = 957 bits (495), Expect = 0.0
Identities = 524/535 (97%), Gaps = 3/535 (0%)
Strand = Plus / Plus
Query: 5 gaattcattcagatcccaaatagctccagattacattttaaaatgtgtttccctgtgatt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcagatccgaaatagctccagattacattttaaaatgtgtttccctgtgatt 264
Query: 65 tcctagaaggctaggccccttactgactcgtctttgtattgtattttttaatgacaatgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcctagaaggctaggccccttactgactcgtctttgtattgtattttttaatgacaatgc 324
Query: 125 tcaaaagttcttatcatgagcatgaacgaatgagttaatataaaaagagacctgaactga 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 tcaaaagttcttatcatgagcatgaacgaatgagttaatataaaaagaggcctgaactga 384
Query: 185 ctgaccaacaagaagtctctaaaaattaaatcaattgcccaaatctctctaagctactat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgaccaacaagaagtctctaaaaattaaatcaattgcccaaatctctctaagctactat 444
Query: 245 ttcaagtagactttccccaaataag---cagagagcccataggtaggaaacaagggcaaa 301
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 445 ttcaagtagactttccccaaataagaagcagagagcccataggtaggaaataagggcaaa 504
Query: 302 catttgcatcctcatccagactgtatttcctcacatgcaaatcagcagagccaaccagcg 361
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 catttgcatcctcaaccagactgtatttcctcacatgcaaatcagtggagccaaccagcg 564
Query: 362 tggaatttgacgaaagtctttctgcaacagcaaaggaaaaatatttggcttcttgggcac 421
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 tggaatttgacgaaagtctttctgcaacggcaaaggaaaaatatttggcttcttgggcac 624
Query: 422 caaaacaaacttaaactggagctggaaaggagaagtgcaaagcagagaagcttacacagt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 625 caaaacaaacttaaactggagctggaaaggagaagtgcaaagcagagaagcttacactgt 684
Query: 482 acacctacaaaatggactcccacagagagatactcgtccacacagcctatgtgac 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acacctacaaaatggactcccacagagagatactcgtccacacagcctatgtgac 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 939
Length adjustment: 10
Effective length of query: 526
Effective length of database: 929
Effective search space: 488654
Effective search space used: 488654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_g13.g1 MSMg01no046_g13.g1 CHROMAT_FILE:
MSMg01no046_g13.g1 PHD_FILE: MSMg01no046_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:34 2005
(472 letters)
>mm_chr11_19503723_19504594
Length = 872
Score = 897 bits (464), Expect = 0.0
Identities = 470/472 (99%)
Strand = Plus / Minus
Query: 1 aacctagtgactggaagactcctttgctcacctaagcctgattttagggaccctgaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aacctagtgactggaagactcctttgctcacctaagcctgattttagggaccctgaaact 613
Query: 61 gagaacagttcagctcagagctgatgatggacactaacaatctcagccagcgtgctcacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gagaacagttcagctcagagctgatgatggacactaacaatctcagccagcgtgctcacg 553
Query: 121 tgctttgatgtgattcctcttctcttacttggctctggacagggggacttttctcaatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgctttgatgtgattcctcttctcttacttggctctggacagggggacttttctcaatcc 493
Query: 181 tttgccatgagctgatgaaagcatttcaggaattttccggttttcctttctaactgattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tttgccatgagctgatgaaagcatttcaggaattttccggttttcctttctaactgattt 433
Query: 241 gtagaaacaaactttaaatgtatactcagttcaaagaaagttctgtagccttaagtagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtagaaacaaactttaaatgtatactcagttcaaagaaagttctgtagccttaagtagtt 373
Query: 301 atccctgaaagacttaagtatgaggaataagctgactacactgaacccaattctaaccaa 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atccctgaaagacttaagtataaggaataagctgactacactgaacccaattctaaccaa 313
Query: 361 ctagagcagataaaaagctgcactgaaagtccagggtttaacatgtcttttcagcaagac 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 312 ctagagcagataaaaagctgcactgaaagtccagggtttaacatgtcttttcagcaggac 253
Query: 421 ctggacttgcttgtgatgttgacctattttccgcattctagactcaaccttg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctggacttgcttgtgatgttgacctattttccgcattctagactcaaccttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
