BAC Information

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BAC

Clone NameMSMg01-046I02
Chromosome11 (Build37)
Map Location 117,366,743 - 117,367,188
singlet/doubletsinglet
Overlap genenone
Upstream geneSphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423
Downstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046I02.T7 (MSMg01no046_i02.b1)MSMg01-046I02.TJ (MSMg01no046_i02.g1)
ACCAG276866AG276867
length677667
length of high quality
(start - end)		257 (16 - 272)446 (55 - 500)
definitionCHROMAT_FILE: MSMg01no046_i02.b1 PHD_FILE: MSMg01no046_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:41 2005CHROMAT_FILE: MSMg01no046_i02.g1 PHD_FILE: MSMg01no046_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATTCCAGAGATCCGCGGAATTCACGCAGTTGACTCCTTCTCACAGTC
TGTGTTGTGGGAACACTTCATTACCACCATTCCCCAGCTGAAGAGTTCTG
AATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTGCGGGAACACTTC
ATTACCATGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCGC
CTGTGATGGTAGTTTCCGTCCCAGGTTTTCTTGTCCCGGGATTTCTCGTC
CCAGGTCTTCTCCGTCCCGGGGTTTTTCTTCGTCCCCGTCCCGGAAGTTT
TCGGCACCAACTTCTTACACGCGGTCTTCGCCAACCAGCCCGGTAAAAAA
CGGATACTAAACCGGAAACCTTTCGGGGGCAAAAACTTTATTGGGTTAAA
CTCCTCCCCACCCCCAAAGATTCTTCTAAAACTTTTAATAAATATCCGTA
GTTCCGTATTAAAAAAAATATCTCTCATAATCCTCAGATGCGGGAATCCT
CCGAATTATAGTGGGGTTAAACCCCCCCCCTCCCTTTTTTAGAAAAAAAA
ATTTCCCCCCTCCTCCCAATACCTATAATACCCTCCCCGGAGGTGGGGGG
TGGCCCTCCTCTCCCTTTCTTTTGTTTTTCTCTCCCTCAAAAAAAATGGA
CAATTTCTCTTTGGGGGCGCTTATTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXACCTGACCCAGAAGTTGTCATAAATGGCGCCATAAAATCACAGGTG
GTCCTGACTCTTCACTAAGCTCAGAGTAGCCCTTGGGTACAGCTCTATGA
CAGCAGGAGGTGGCCTGCACATGCTCAGGGCGGATACAGGGACTGAGGAC
TCCCTTCTCAGTAAATGGAGCCAGGAGGTCAGCCTCTGTTCACCTGGAAA
AGGAAAATGAGGTAATTAGCAATTATGTAGCAAACCGTATGGAAGGAACC
TTACAGAGAGATGGATAAACTTACCGCATGTGCAACGCAACTCCACTGCC
TGCATATCCGACAGAATGTTTTTGTTTCAGTGTCAGGGGCTTGAAGGGAA
CAGCTGAGGTCCAGGGACAGTCACACATATTTGGGACAAGATCAGCCACA
GCTACCAGGGACTGTCGTTGGAAGGACTGGACCCTGGGCAGAATGCAGGT
TCCTAGACCACTATCTGAGCATGCCTGTGGATCTGTCCAATGTGCTATCA
TCTGCACAGCCAGCGGCATGTAGGCCATCTCTGTGGTCTCTGAACTTCAA
GTCTGCTCCTGCACAGGAGTCTGACATCACTGAGACGTCTCTTCCCATCT
GGTAAGAGTGCGACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_i02.g1 MSMg01no046_i02.g1 CHROMAT_FILE:
MSMg01no046_i02.g1 PHD_FILE: MSMg01no046_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:41 2005
         (446 letters)



>mm_chr11_117366543_117367388
          Length = 846

 Score =  824 bits (426), Expect = 0.0
 Identities = 441/446 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgacccagaagttgtcataaatggcgccataaaatcacaggtggtcctgactcttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 acctgacccagaagttgtcataaatggcgccataaaatcacaggtggtcctgactcttca 587

                                                                       
Query: 61  ctaagctcagagtagcccttgggtacagctctatgacagcaggaggtggcctgcacatgc 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctaagctcagagtggcccttgggtacagctctatgacagcaggaggtggcctgcacatgc 527

                                                                       
Query: 121 tcagggcggatacagggactgaggactcccttctcagtaaatggagccaggaggtcagcc 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tcagggcagatacagggactgaggactcccttctcagtaaatggagccaggaggtcagcc 467

                                                                       
Query: 181 tctgttcacctggaaaaggaaaatgaggtaattagcaattatgtagcaaaccgtatggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tctgttcacctggaaaaggaaaatgaggtaattagcaattatgtagcaaaccgtatggaa 407

                                                                       
Query: 241 ggaaccttacagagagatggataaacttaccgcatgtgcaacgcaactccactgcctgca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 406 ggaaccttacagagagatggataaacttaccgcatgtgcaacgcaactccaccgcctgca 347

                                                                       
Query: 301 tatccgacagaatgtttttgtttcagtgtcaggggcttgaagggaacagctgaggtccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tatccgacagaatgtttttgtttcagtgtcaggggcttgaagggaacagctgaggtccag 287

                                                                       
Query: 361 ggacagtcacacatatttgggacaagatcagccacagctaccagggactgtcgttggaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 286 ggacagtcacacatatttgggacaagatcagccacagctaccagggactgttgatggaag 227

                                     
Query: 421 gactggaccctgggcagaatgcaggt 446
           ||||||||||||||||||||||||||
Sbjct: 226 gactggaccctgggcagaatgcaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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