Query= MSMg01no046_l11.b1 MSMg01no046_l11.b1 CHROMAT_FILE:
MSMg01no046_l11.b1 PHD_FILE: MSMg01no046_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:56 2005
(421 letters)
>mm_chr11_34963559_34964379
Length = 821
Score = 752 bits (389), Expect = 0.0
Identities = 413/421 (98%)
Strand = Plus / Plus
Query: 1 gctttgtataactcaacgagatgctccatctcttcagtacctgcagggtcagtcatccag 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 gctttgtataactcaacgagatgctccatctcttcagtacccacagggtcagtcatccag 260
Query: 61 gtagagtagacatcagaactcctggaaggcttgttacagtgtagcttaatgggctcctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagagtagacatcagaactcctggaaggcttgttacagtgtagcttaatgggctcctcc 320
Query: 121 ttccttagcggtcctgacccgtaggttgggtgaggccggcctggtagtgtgcactcagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccttagcggtcctgacccgtaggttgggtgaggccggcctggtagtgtgcactcagaa 380
Query: 181 ctgtttctctgaggaatgtgcctgtggttggcccagggagcacactttagggatcactcc 240
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ctggttctctgaggaatgtgcctgtggttggcccagggagcacactttagggatcacttc 440
Query: 241 tctggccaaagaatcctgaatttattacttccctagaattacacagcgcctaggataaag 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctggccaaaggatcctgaatttattacttccctagaattacacagcgcctaggataaag 500
Query: 301 tagtcacctgaaatatatttgttagtgtgaactgtggaggtgcagagccgtctctccttt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtcacctgaaatatatttgttagtgtgaactgtggaggtgcagagccgtctctccttt 560
Query: 361 atgtagtatattgtttggtcatctctgtgtgcacattcttatgttcttccatttaagggt 420
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 atgtagtatattgtttggacatctctgtgtgcacattcttatgtttttccatttaagggt 620
Query: 421 a 421
|
Sbjct: 621 a 621
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_l11.g1 MSMg01no046_l11.g1 CHROMAT_FILE:
MSMg01no046_l11.g1 PHD_FILE: MSMg01no046_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:56 2005
(427 letters)
>mm_chr11_35136271_35137094
Length = 824
Score = 677 bits (350), Expect = 0.0
Identities = 404/426 (94%), Gaps = 8/426 (1%)
Strand = Plus / Minus
Query: 7 tagtgtacaaaagacataaagtaccaggactgcaaagtgttctccttaaaaaaaaaaaat 66
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 426 tagtgtacaaaagacataaagtactaggactgcaaagtgtt---cttaaaaaaaaaaaat 370
Query: 67 cattaaatggatgtcagtgttagcaggggtccaataaagccggacctttcagtgcctgtt 126
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 369 cattaaatggatgtcagtgttagcagggggccaataaagccggacctttcagtgcctgtt 310
Query: 127 ggtacaatcaaaactggcaccaggggtctgaaaggggtttgcttattggtatcaagggcc 186
||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 309 ggtgcaatcaaaactggcaccagcggtctgaaaggggtttgcttagtggtatcaagggcc 250
Query: 187 tgaagaatagccacatctttcttcctcctcctacttctcttctttttgatttttcaagat 246
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 249 tgaagaatagccacatctttcttcctcctcctatttctcttctttttgatttttcattat 190
Query: 247 caagtttctctgcttagtcctgactgtcctggatcttgctctgtagaccaggatggcctg 306
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 189 cgagtttctctgcttagtcctgactgtcctggatcttgctctgtagaccaggatagcctg 130
Query: 307 gaactcagagatccac-----tctgcctcctgagtgttgggattaaaatcttgccaccca 361
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 129 gaactcagagatccacctgcttctgcctcctgaatgttgggattaaaatcttgccaccca 70
Query: 362 agttctttattcttaattggccttctgggcgtccattctgatcagaaataaggacaaaga 421
||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 69 agtcctttattcttaattggccttctgggtgtccattctgatgagaaataaggacaaaga 10
Query: 422 ttgtct 427
||||||
Sbjct: 9 ttgtct 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 824
Length adjustment: 9
Effective length of query: 418
Effective length of database: 815
Effective search space: 340670
Effective search space used: 340670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
