BAC Information

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BAC

Clone NameMSMg01-047K20
Chromosome11 (Build37)
Map Location 92,643,966 - 92,644,496
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC382545, LOC100039286, Car10, LOC629636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047K20.T7 (MSMg01no047_k20.b1)MSMg01-047K20.TJ (MSMg01no047_k20.g1)
ACCAG277662AG277663
length702807
length of high quality
(start - end)		534 (46 - 579)---
definitionCHROMAT_FILE: MSMg01no047_k20.b1 PHD_FILE: MSMg01no047_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:03 2005CHROMAT_FILE: MSMg01no047_k20.g1 PHD_FILE: MSMg01no047_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTCTAGGAGATGATTATTCTATGCTAATCAGTGCTCAATTTAA
ATCAGAAAAAGTCCAATAAACAACCACAACAAGAGAAACAGAATTCTCCA
AGCATTTATAGTCAGTGTCTAAAACTGTTAGTACTCTAAATCATGACTGT
GGATGAGTAATCTCTTGAAGTCTAACACAGGACAAACACAGACTCCCTGT
AATCACTCTGCTCTACTCTTATTTGTTTTGGACTCGACTTGATTTGAGAA
GATACTGGAGCTCTGTCAATAAGCAACAGACAACAATTTCTTTGAATGGA
TTTTAAGCTATATTTTGAAGACCCGGCATCTTTTCTGTATAAGAGGTTGA
AGAAGAATGCTCAAGACCCTTCCCCCACCATGGCAAAATACAGGAGCCTG
CTACTCAGAAACTCTAAATCTTGAGTAAGAAAAGAAAGTGAAAGACAGAA
AATTCTCAACTTTTTGAAACATGTGATTAATCAGAGAACAGGCAAGTCAG
CTTAATAAAGTAAAGTGTGTTTGGCATTAGGCACCAAGTGGCTCGTTTCT
GGTGTGGATTTATCAAGATAATGAATTTTAGTAAAAGGTTTCCCCAGTGA
TTTCCGGTAGCTTTAGGTCTGCAGCGAATCTCTGATTCTTCTCCTATAAA
AA

CCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGCGAAC
CCCTGTCTTTAAACTATGATTTTCCCAGACATAGAGACAGATATAGCTAG
AGACGCAGACCTAGAGTGGTCGGTCCCCTTTTTCCTTTCTTTTCCTCTTT
TTTTCCCTCCTCCTCTTTCCCCCCTTTTTCTCCTCCTCTTTTCCCTTTTT
TTTCCCTTTCTTTCCCCTCCCTCCTTCCTCTCTTTTCTCTCCTCCTCTTC
CTCCCTCCCTCCTCCCTCTTCTTCTTCCCCCTTTCTCCCTTCCCTTTCCT
CCCCTTCTCCCTTCTCTCCCTCTTTTTTTTTTTTCCCCCCCCCCCCCCCT
TGTTCTCCTTTTTTCTTTTCTTTTTTCCCTTCTCCCCCCCCCCCCCCCCC
TTTTTTCCTCCTCCCTTCTTTTTTTCTCCCCTCCCTCCTCCCCTCCTTCC
TCCTCCTCTTTTTTTTCTCCTTCTCTTCCTCTCCTCTTCTCTCCCCCTCT
TTCTTTCTCTCCCTCTTCCTCCCTCCCCCCTCCTTTTCTCTCCTTCCCCC
CTTTTTTCCTCCCTTCTCTTTCCCCTTTCTTCTTTTCTTCCCCCCTTTTT
TTTTTCCCCTTTTTTTTCTTCCCCCCCTCTTTTCCTTCCCTCTTCCTTTC
CTTCCCCCCCTTCTCTTCCCCCCCTCTTTCCTCCCCCCCCTCTCCCCTTC
CTCCTCTCTTCCTCTTCTTTTCTTTCTCCTCCCTTTTTTTCTCTCCTTTC
TCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_k20.b1 MSMg01no047_k20.b1 CHROMAT_FILE:
MSMg01no047_k20.b1 PHD_FILE: MSMg01no047_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:03 2005
         (534 letters)



>mm_chr11_92643763_92644696
          Length = 934

 Score = 1019 bits (527), Expect = 0.0
 Identities = 530/531 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatttctaggagatgattattctatgctaatcagtgctcaatttaaatcagaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ggaattcatttctaggagatgattattctatgctaatcagtgctcaatttaaatcagaaa 675

                                                                       
Query: 64  aagtccaataaacaaccacaacaagagaaacagaattctccaagcatttatagtcagtgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aagtccaataaacaaccacaacaagagaaacagaattctccaagcatttatagtcagtgt 615

                                                                       
Query: 124 ctaaaactgttagtactctaaatcatgactgtggatgagtaatctcttgaagtctaacac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ctaaaactgttagtactctaaatcatgactgtggatgagtaatctcttgaagtctaacac 555

                                                                       
Query: 184 aggacaaacacagactccctgtaatcactctgctctactcttatttgttttggactcgac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aggacaaacacagactccctgtaatcactctgctctactcttatttgttttggactcgac 495

                                                                       
Query: 244 ttgatttgagaagatactggagctctgtcaataagcaacagacaacaatttctttgaatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttgatttgagaagatactggagctctgtcaataagcaacagacaacaatttctttgaatg 435

                                                                       
Query: 304 gattttaagctatattttgaagacccggcatcttttctgtataagaggttgaagaagaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gattttaagctatattttgaagacccggcatcttttctgtataagaggttgaagaagaat 375

                                                                       
Query: 364 gctcaagacccttcccccaccatggcaaaatacaggagcctgctactcagaaactctaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gctcaagacccttcccccaccatggcaaaatacaggagcctgctactcagaaactctaaa 315

                                                                       
Query: 424 tcttgagtaagaaaagaaagtgaaagacagaaaattctcaactttttgaaacatgtgatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcttgagtaagaaaagaaagtgaaagacagaaaattctcaactttttgaaacatgtgatt 255

                                                              
Query: 484 aatcagagaacaggcaagtcagcttaataaagtaaagtgtgtttggcatta 534
           |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aatcagagcacaggcaagtcagcttaataaagtaaagtgtgtttggcatta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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