BAC Information

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BAC

Clone NameMSMg01-047N21
Chromosome11 (Build37)
Map Location 107,903,922 - 107,904,165
singlet/doubletsinglet
Overlap genePrkca
Upstream geneBptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5
Downstream geneApoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047N21.T7 (MSMg01no047_n21.b1)MSMg01-047N21.TJ (MSMg01no047_n21.g1)
ACCAG277785AG277786
length743751
length of high quality
(start - end)
93 (34 - 126)244 (76 - 319)
definitionCHROMAT_FILE: MSMg01no047_n21.b1 PHD_FILE: MSMg01no047_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:17 2005CHROMAT_FILE: MSMg01no047_n21.g1 PHD_FILE: MSMg01no047_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGAGGATCCGCG
GAATTCTCTGGGTATTTCGGCAAACCTTCGGTCTTCTGTCACTGGCTGAA
GTGACTCCTCCTCCTCCTCATCTCCTTCAGTGACTAATACAAAGGCGGCA
GGTTGTGAGATCCTCTCTGTAGGAGAAGAAAAGAGTGCATGAGTGAATAA
TCAGAGTGCTCTAACCTTCTTTGCACTGTGTCTTAGTTCCCTTTTGCTGC
TGTAACAAAATCCCCGCCCTCCTCCACTGGATATAATTAATTCACTGCTC
CGGATGATGAAAACCCAAGGTCATGGTGCTGGACTGGCTAGGTCATGGTG
CTGGACTGGTTTTTTTTCATGCCGCCCCCCCGTCCATGTTTTGGCTGCCG
GTATTGGTTTTTTTTTTTCCCCACTCAAAACAACTCTTTTGTGTTTGTTC
TCCCTTTTTTGGTTCCATTGTTTCCCCCAGGGAAGGTAAGCCGGTATCCA
CGTGAGGTAAGTCTTGAAGATCTAAGAGACAAAGGGCAGGACCACCCTTC
TTACTTTATTACTTATCCGTTGTGTGCATGTGTGTGCATACGTGTGTTGG
CCCTGCCTGCCCCCCCTTCACGGTTGCGTATTTTTGCCACGCACTAAAGT
GCTCTCCTTGTTTGGCGGCTCAGTTTGTTATTTTTTTCTCCTTCATTCGC
ACACCCCTTCGATTATTCTTATTCTTTGAGTCATGTGCCGTGG
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTATTGCCATTTCCCCCGACTGG
AATGATAAAGTTTTGGTCAGAACCTTTCTGGGTGAAGCTGTGCATTTCGT
AGGAAATCCTTGGAGGGAGAACACCTGTTCGATTTGTGGGGAGACTGAAT
TTTTTGAGCTGAATGTATGTCTCCCTCTTCTCTTGTACTCATATATTAAA
ACACCAATTCCAATGTGATGGCATTTGAGAGTGTGGCTTTTGGAAAGTAA
TGGGGAGAGGAGGGAAGAGTACTCTTGGTAGGACGGGTGCCCTTATAAAA
GCCTGTATGTTTTTTTACGCCCCCCCACCCCCTCAGGGTGAGCGTTACTG
TATCGTTATCCCGTTTTCCCCCCAAAATAAAAATACTTTTTTTTTTTTCG
GTGCCTTATTCTTTTTTCCTCTCTTATTTATATTTTGTTCCACTGCCTGC
TTCCCCCGTGTACTATCTCTGTTTAGTCTTCTCCCCCCATATCTTTGATT
TGCCCCGATGGATTGTTTTACTTGGTCCTCCTGTCTCTGATCCTCCCCCC
TTTTTTTTTTCCCTTCTTTTTTTCCTCCACTCTGTACTGCCATCCCCTGT
TCTTGTCCCCCTTTCTCACCCTCCTTTTCTACCGCCCATCCTGGCATCTT
TCCTCTCGAATTCAATTTTTACCGCGTTTACTTTTCGCAGTTTCTGGTTC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_n21.g1 MSMg01no047_n21.g1 CHROMAT_FILE:
MSMg01no047_n21.g1 PHD_FILE: MSMg01no047_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:17 2005
         (244 letters)



>mm_chr11_107903722_107904365
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttattgccatttcccccgactggaatgataaagttttggtcagaacctttctgggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttattgccatttcccccgactggaatgataaagttttggtcagaacctttctgggtga 260

                                                                       
Query: 61  agctgtgcatttcgtaggaaatccttggagggagaacacctgttcgatttgtggggagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgtgcatttcgtaggaaatccttggagggagaacacctgttcgatttgtggggagac 320

                                                                       
Query: 121 tgaattttttgagctgaatgtatgtctccctcttctcttgtactcatatattaaaacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaattttttgagctgaatgtatgtctccctcttctcttgtactcatatattaaaacacc 380

                                                                       
Query: 181 aattccaatgtgatggcatttgagagtgtggcttttggaaagtaatggggagaggaggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattccaatgtgatggcatttgagagtgtggcttttggaaagtaatggggagaggaggga 440

               
Query: 241 agag 244
           ||||
Sbjct: 441 agag 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)