Query= MSMg01no048_f16.b1 MSMg01no048_f16.b1 CHROMAT_FILE:
MSMg01no048_f16.b1 PHD_FILE: MSMg01no048_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:11 2005
(702 letters)
>mm_chr11_50300164_50301268
Length = 1105
Score = 1100 bits (569), Expect = 0.0
Identities = 655/691 (94%), Gaps = 19/691 (2%)
Strand = Plus / Minus
Query: 16 gaatt-aattcccctacacccacctgtaaagagagaatcggctgcattctctaacaccat 74
||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 742 gaattcaattcccctacacccacgtgggaagagagaatcggctgcattctctaacaccat 683
Query: 75 cgctctggcccaagtgctgcaccggggcctctgggggactctgagcacaaaaaccacacc 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cgctctggcccaagtgctgcaccggggcctctgggggactctgagcacaaaaaccacacc 623
Query: 135 aggcctggaatctggcttgcttcagcaacatgccattgtgtggagaaatcttcctaaatg 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aggcctggaatctggcttgcttcagcaacatgccattgtgtggagaaatcttcctaaatg 563
Query: 195 ggcgagtctctacttgccttccttgggtctctgagcctcactactaccttctgaggaatc 254
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 562 ggcgagtctctacttgccttccttgggtctctgagcctcactgctaccttctgaggaatc 503
Query: 255 caagcacggcacctgccatcc-----ccctacactgtggcttcactccccaccacactca 309
||||||||||||||||| || | | ||||||||||||||||||||||||||||||
Sbjct: 502 caagcacggcacctgcc--ccacacacac-acactgtggcttcactccccaccacactca 446
Query: 310 caccacaggctgccactgccacaccaggagttacagattcccaagctcagtccctgacca 369
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 445 caccacaggctgccactgccacaccaggagttacagattcccaagctcagtccttcacca 386
Query: 370 cgctggtctccagcccagttggcccttctatgttgtccaatggactatttatattatcag 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cgctggtctccagcccagttggcccttctatgttgtccaatggactatttatattatcag 326
Query: 430 gtccagtattgcttttattggtctactttaactgtgtgtatttatagggcatgaaatgat 489
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtccagtattgtttttattggtctactttaactgtgtgtatttatagggcatgaaatgat 266
Query: 490 ggtctgatgtgtccatccattatgtaatgaacaaaccattccatttgtccgttctttctt 549
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 ggtctgatgtgtccatccattatgtaatgaacaaaccattccatttgtcctttctttctt 206
Query: 550 tctttctttctttctttcttccttccttccttccttccttcctttctttctttcttcctt 609
|||| ||| ||||||||||| ||| ||| ||| ||||||||| ||| |||||||
Sbjct: 205 tcttccttcctttctttctttctttctttctttcttccttcc-----ttc---cttcctt 154
Query: 610 cctttccttccttccttccttccttccttctctctctctctctctctctctctctctctc 669
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 153 cctttccttccttccttccttccttccttc-ct-tctctctctctctctctctctctctc 96
Query: 670 tctctctctctctctctctctctctctctct 700
|||||||| | ||||||||||||||||||||
Sbjct: 95 tctctctccccctctctctctctctctctct 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1105
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1095
Effective search space: 757740
Effective search space used: 757740
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_f16.g1 MSMg01no048_f16.g1 CHROMAT_FILE:
MSMg01no048_f16.g1 PHD_FILE: MSMg01no048_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:11 2005
(313 letters)
>mm_chr11_50190188_50190900
Length = 713
Score = 530 bits (274), Expect = e-155
Identities = 308/330 (93%), Gaps = 17/330 (5%)
Strand = Plus / Plus
Query: 1 aacgtcacccatttacctctgtaagggcacacgctatgacccgggcgcgtctccaccttg 60
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 184 aacgtcacccatttacctctgtaagggcacacgggatgacccgggcgtgtctccaccttg 243
Query: 61 ggagaggcccgttggtcggtcgggcgcagcgctctggggctgcgtccttcgcgcccctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggagaggcccgttggtcggtcgggcgcagcgctctggggctgcgtccttcgcgcccctgg 303
Query: 121 cagtctcagccttccctcgcgaggcgccgcacaccgagcgcctctcgtgcaagggcgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagtctcagccttccctcgcgaggcgccgcacaccgagcgcctctcgtgcaagggcgagg 363
Query: 181 ggttcgtagagtgcgagtccgttaggcaaagtgggg-----------------cactggc 223
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 364 ggttcgtagagtgcgagtccgttaggcaaagtggggtacaggactagctcgggcactggc 423
Query: 224 agcccatgtgggtcgggactgatcccctaaagcgggcaggtaaggggactggtcccaggc 283
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 424 agcccatgtgggtcgggactgaccccctaaagcgggcaggtaaggggactggtcccaggc 483
Query: 284 gccccacggagatcggggatttgggtgcag 313
||||||||||||||||||||||||| ||||
Sbjct: 484 gccccacggagatcggggatttgggcgcag 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
