BAC Information

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BAC

Clone NameMSMg01-048O14
Chromosome11 (Build37)
Map Location 92,602,522 - 92,603,129
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC382545, LOC100039286, Car10, LOC629636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048O14.T7 (MSMg01no048_o14.b1)MSMg01-048O14.TJ (MSMg01no048_o14.g1)
ACCAG278549AG278550
length1,2901,286
length of high quality
(start - end)		610 (79 - 688)194 (80 - 273)
definitionCHROMAT_FILE: MSMg01no048_o14.b1 PHD_FILE: MSMg01no048_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:22 2005CHROMAT_FILE: MSMg01no048_o14.g1 PHD_FILE: MSMg01no048_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTNNTACATTGGGCGCTAAGACTCCTATGGGAGAGGATCCGCG
GAATTCAGAAATTGCTCTTGCGCCTTCAAGGAGGGCAAGGAGGTGTGTGG
AGCAGTGAATCACGTATCTCAGAAACACCGGACAGGGTCACAGGGGTAGT
GCCTGAAAGTGTTCCTCCAAGAAAGTAGACTGTGAATCAAATAAGCCACT
CTACACCTGCTCTTTGTATTGTCTGCCAAGTAGCAGAAACTCATGAATGG
AACCTAATTACTCTGTGCCTCTAAATTTTACTATTGGCTGAACTTATATT
TCACATTATATTGATAATAAGCTGAACAAGTGAGGATTTATTGATTAATT
AATAGTTTCCCAGATCAAGGAGCATAATATAATAATCCATTGTAGATTCA
AAGGCTATTAGATTATATCACAGATCTTAGATGTTAAGGTAAAATATTGA
TAAGGGAAGAGTTTTGATTTCTTTTGTTGAAAGTTTAACTGTAACAATGG
AGATATTTTGGGTCATCATGAGAAGCAATTATATTTGAAAAGATTATAGT
CATTTTTTAAAAGTGTTTCTGCCATAATGAGGGGAGGTCATGAGACAAGG
GATGTACTGGGGAATACAGACTCCAGTTAAGACTCTCATCCTCTGCTAGG
TGACCATTGTTATTCCAAAGAGTGCAAACTTCCATCAATATTTGTGCTTC
ATTGATTATATAAAGCAGTTTTCTATACTCCCCCTCATTTAACCACTTTT
TATCTTATCTGGACAAAGAAGGATATTGTATTTATCTTCAATACTGAGTT
TCATTGGATATGTTTCTGATCTTATTTGCATTTTATCTGACTTTATTTGT
TTTACCATCTTTTTTTTTTTGAATTATTATTTTTAGTTTTTTGCATTAAT
GTGTATTTATATTTTTTTATTTTTATTATTTTTTTACATTTTTACCTCTT
TATTATTTTAATTTCTTATATTTTTTTATTTTTATTTATCTTTTTTTTCT
TTTCCTTTTCTCTTTCTCTTTTATTCTTCTTTTATTTATTTTATTATTTT
TCTTTTTTTTTCTTTTATTTCTATTTACTATTTAATTTCTTTTTTTTACT
TTTTTANTATTTTTTTTTTTCATCTCCTTATTTTTCTTTTTTCTTATTAA
TGTTATTTTTTTTATTTTAGTTCATCTTTATTTTTTTTTTTATATTTTTT
TTCTTACTCTATTTATTATATGTTTCTTTTCTTTCTCTATTCTTTCATTT
ATATTTCTTCATTAATTTTATTATTATCTTTTTTATTCAT

TTTTTTTAGAAGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTTTGAATTCCTGATGTCAGACAAGGCTATT
CTCTGCTACCTATGTATCTGGAGCCACGCATGCCTCCCTGTAGACTCCTT
GGTTTGTGGTCTAGTCCCTGGGAACACTAAATATTACAGAGAAGGGAGGC
CCTTAATCCTGTGGAGGTTTGAAGCACCAGTGTAGGGGGCTGCTGGAGGG
GTGGAGTGGGAGAGAGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT
TTTTTTNNTNTNTTTNNNNTNNNTTTTCTTTTTTTTTTTTTTTTTTTTTC
TTTTTTTTTTTTTNTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTT
TTNTTTTTTTTTTTTTTTTCTTTNTTTTTTTTTTTTTTTTTCTTTTTTTC
TTTTTTTTTTTTCTTTTTTTTTTTTTTCTTTTTTNTTTTTCTTCTTTTTT
TTTTTTTCTTTTTTTTTTTNTCCTTTCTTTTCTTTTTTTTCTTTTTTCTT
TTTTTTTTTTTCTTTTTTTTTCTTTCTTTTTTTTTTTTTTCTTTTCTTTT
CTCCTTTTTTTTTTTTTTTTTTCTTTTTTTTTCTTTTTTTTTTCTTCCTT
TTCTTTTTTTTTTTTTTTTTTTTCTTCTTTTTTTTCCTTTTTTTTTTTTT
TTTCTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTCTTC
TTTTTTTTTTTTTTTTTTTTTTTTTCTCTCTCTTTNTTTCTTTCTTCTTT
CNTTTTTTTTCTTTTTCTTTTTCTCTCTCTTTTTCTTTTCTTTTTTTTCT
TTTCTCCTTTTTTTTCTTCTTTTTCTTTCTTTTCTCTTCTCTTTCTTTTT
CTTTTTTTCTCCTTTTTCTTTTTTNTTTTTTTTTTTTTTCTTTCCCTTTC
TTTTCTCTTTTTTTTCTTTCTCTTTCTTCCCCTTTTTTTTTTTTTTTTCT
TTTTTTTCCCTTTTCTTTTTTTTTCNTCTTTCTTTTCTTTTTCTTTCTTT
TTCTTCTCTTTTTCTTTTTTCCTTTCTTTTCTTTTTTCTTCTTTCTTTTC
TTCTTTCTTTCTTTTTCTTTTCTTTCTTTTTCTTTNTTTTCTTTTTTTTT
TCTTTTTCTCNTTTTTTCTCTTCTTCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_o14.b1 MSMg01no048_o14.b1 CHROMAT_FILE:
MSMg01no048_o14.b1 PHD_FILE: MSMg01no048_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:22 2005
         (610 letters)



>mm_chr11_92602322_92603329
          Length = 1008

 Score = 1044 bits (540), Expect = 0.0
 Identities = 592/610 (97%), Gaps = 2/610 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagggcaaggaggtgtgtggagcagtgaatcacgtatctcagaaacaccggacagggt 60
           |||||||||||||||||||||||||||||||||| | ||||||||||||  || ||||||
Sbjct: 808 aggagggcaaggaggtgtgtggagcagtgaatcagggatctcagaaacaatgggcagggt 749

                                                                       
Query: 61  cacaggggtagtgcctgaaagtgttcctccaagaaagtagactgtgaatcaaataagcca 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cacaagggtagtgcctgaaagtgttcctccaagaaagtagactgtgaatcaaataagcca 689

                                                                       
Query: 121 ctctacacctgctctttgtattgtctgccaagtagcagaaactcatgaatggaacctaat 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 688 ctctacacctgctctttgtattgtctgccaagtagcagaaactgatgaatggaacctaat 629

                                                                       
Query: 181 tactctgtgcctctaaattttactattggctgaacttatatttcacattatattgataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tactctgtgcctctaaattttactattggctgaacttatatttcacattatattgataat 569

                                                                       
Query: 241 aagctgaacaagtgaggatttattgattaattaatagtttcccagatcaaggagcataat 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 568 aagctgaacaagtgaggatttattgactaattaatagtttcccagatcaaggagcataat 509

                                                                       
Query: 301 ataataatccattgtagattcaaaggctattagattatatcacagatcttagatgttaag 360
           ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ataatgatccattgtggatgcaaaggctattagattatatcacagatcttagatgttaag 449

                                                                       
Query: 361 gtaaaatattgataagggaagagttttgatttcttttgttgaaagtttaactgtaacaat 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 448 gtaaaatattgataagggaagagttttgatttcttttgttgaaagtttaagtgtaacaat 389

                                                                       
Query: 421 ggagatattttgggtcatcatgagaagcaattatatttgaaaagattatagtcatttttt 480
           |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 388 ggagatattttgggtcatcatgagaagcaattatgtttgaaaagattacagtcatttttt 329

                                                                       
Query: 481 aaaagtgtttctgccataatgaggggaggtcatgagacaagggatgtactggggaataca 540
           ||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 328 aa--gtgtttctgccataatgaggggaagtcatgagacaagggatgtactggggaataca 271

                                                                       
Query: 541 gactccagttaagactctcatcctctgctaggtgaccattgttattccaaagagtgcaaa 600
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gactccagttaagactttcatcctctgctaggtgaccattgttattccaaagagtgcaaa 211

                     
Query: 601 cttccatcaa 610
           ||||||||||
Sbjct: 210 cttccatcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1008
Length adjustment: 10
Effective length of query: 600
Effective length of database: 998
Effective search space:   598800
Effective search space used:   598800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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