BAC Information

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BAC

Clone NameMSMg01-048O15
Chromosome11 (Build37)
Map Location 87,024,134 - 87,024,704
singlet/doubletsinglet
Overlap geneTrim37
Upstream geneInts2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik
Downstream genePpm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048O15.T7 (MSMg01no048_o15.b1)MSMg01-048O15.TJ (MSMg01no048_o15.g1)
ACCAG278551AG278552
length1,1671,201
length of high quality
(start - end)		564 (75 - 638)537 (87 - 623)
definitionCHROMAT_FILE: MSMg01no048_o15.b1 PHD_FILE: MSMg01no048_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:22 2005CHROMAT_FILE: MSMg01no048_o15.g1 PHD_FILE: MSMg01no048_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTACTATGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTGGCTTAACTGTTTACCATCACCTAAAACAACCTGCTTCATCTCTGCAG
ATGAGCCTCAGTTATAATTTTTAACATTTCTTCTAAGATATCAAATAAAA
TATCTGGTTATTTTAGCAATACAAGTTATTTAAAACAATCTTAAGTCATT
ATTCTTCCTCTATCTTTTATAGGTTAGCAAAAAAGAACAACTTTCAAAAA
TATTTTGATTTCCCCCAGTATTACTTTCCACTTCATTTGAATTTTAGTCA
TTGATGAATTATTGTTTATAACACACAGAGAGATGCTAGCATATACTTCT
GGCTGTCCTGGTCAGTGTAATAGTCTGACAAGGGTAATAGTCCTTGAGAC
ACAACTTGCATAGTGGGCTACAGGTACTAACTAATAAAACAAACTGTAGA
TTTTTTTTTTTTTGAGATAGGGTTTCTCTGTATAGTACTGGCTGTCCTGG
AACTTACTCTGTAGTCCAGGCTAGCCTCGAACTCAGAAATCCACCTGCCT
CTGCCTCCCAAGTGCATGTGCCACCACCGCCAGGCAAACTGTAGCTTTTT
TAAGGTATGCTGTGTATGTGTGGTAGGAGGGGAGAGGTNNNNNNNNNNNN
NNTNNNTNNNNNNTTTNNTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTT
TTTTTTTNNTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTT
TTTTTTTTTTTTTTTTTNTTNTTTTTTTTTTTTTTTTTTTTTTTTTNTTT
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTT

NGTTTTTTTNTTNNAAGAAGGNAGGCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTATGTATTTGTTAAGATT
TGCTTTAAGACCTAGAATGCGATCCATTTTGGAGAGGCTTCCATGGGCTT
TTAAGGAAAATGTATATTCCTTGTCTGCAGGATAGACTGTCCTGTAGAAA
ACACAGGGTCCATTTGATCTAGAGTGGAGCACACAATTTCAGGTGTGTGT
GTGTGTGTGTGTGTGTGTGCGTGTGCATGCTTATATTAGGTAACTTAACT
TGAAGTGAGTGTGGAGTCTTGAAGTCTCTTACTGTAGTTTCCGGACCTAT
CGGAGCTTTCATGCTCACTAGTGTGTGTTTTGCTAAACTTGGAACTTCAA
CACTTGTTGCCTATATATTTACAATTTTTCTATGATCTTAATTACATTTT
TTTGGTGTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGTTGCCCTGGA
ACTCACTCTGTAGACCAGGCTGCCCTCGAACTCAGAAATATGCCTGTCTC
TGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCAGCAGT
TAAATTGTATATTTATTCGGCATGTAGCATAGTGTCCTTCGCCTCTTTTG
ACCCTGGACTGAATTGTCATGTCTGTCTGACCGTCCTGCCCCTTTTTACT
TCCTTCATCTGACTCTGTTCGTGTCCTTCTTTAACTTTGATTTTATTTCT
TGTTATCTCTTTATATTTTGTTTTATCATTAACTTTGTCTTTTTTTTTCT
TTCAATATTTTTGTTATTTTTCTTTTATTTTTTTTTTCTTTTTTTTTTTT
TTTTCTTCTTTTTCTCATTTCTTTTTATTTTTCATCTTATTTTTTTCTTC
TTTTTTTCATTTTTTTTTATTTTTTCTCTTCTTTTATTTCTTTTTTTTTT
CACTTCTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTCTTTTCTCTTTTTT
TTTTTTTTTTTTTTCTTTTTTTTATCTTTTTTCTCTTCTTCTTTTTTTAC
TTCTTTTTTCCTTTTAATTTTATTTTTTTTTTCTTATTTTCCTTTTTTTT
TTATATTTTTTTTTTTTCTCTCTCTTTTTTTTCTTTTCTTCTTTTTATTT
TTTCTACATTTTATCTCTTTATTCTCTTTTTCTCTTCACTTTTTATCTAT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_o15.b1 MSMg01no048_o15.b1 CHROMAT_FILE:
MSMg01no048_o15.b1 PHD_FILE: MSMg01no048_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:22 2005
         (564 letters)



>mm_chr11_87023934_87024896
          Length = 963

 Score = 1025 bits (530), Expect = 0.0
 Identities = 558/572 (97%), Gaps = 9/572 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaacaacctgcttcatctctgcagatgagcctcagttataatttttaacatttcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaacaacctgcttcatctctgcagatgagcctcagttataatttttaacatttcttct 260

                                                                       
Query: 61  aagatatcaaataaaatatctggttattttagcaatacaagttatttaaaacaatcttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatatcaaataaaatatctggttattttagcaatacaagttatttaaaacaatcttaa 320

                                                                       
Query: 121 gtcattattcttcctctatcttttataggttagcaaaaaagaacaactttcaaaaatatt 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcattgttcttcctctatcttttataggttagcaaaaaagaacaactttcaaaaatatt 380

                                                                       
Query: 181 ttgatttcccccagtattactttccacttcatttgaattttagtcattgatgaattattg 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ttgatttcccccagtattactttccacttcatttgaatttcagtcattgatgaattattg 440

                                                                       
Query: 241 tttataacacacagagagatgctagcatatacttctggctgtcctggtcagtgtaatagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttataacacacagagagatgctagcatatacttctggctgtcctggtcagtgtaatagt 500

                                                                       
Query: 301 ctgacaagggtaatagtccttgagacacaacttgcatagtgggctacaggtactaactaa 360
           ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 ctgaccagggtaatagtccttgagacaca-cttgcatagtgggctacaggtactaactaa 559

                                                                       
Query: 361 taaaacaaactgtagattttttttttttt--------gagatagggtttctctgtatagt 412
           |||||||||||||||||||||||||||||        |||||||||||||||||||||||
Sbjct: 560 taaaacaaactgtagattttttttttttttttttttggagatagggtttctctgtatagt 619

                                                                       
Query: 413 actggctgtcctggaacttactctgtagtccaggctagcctcgaactcagaaatccacct 472
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 actggctgtcctggaactcactctgtagtccaggctagcctcgaactcagaaatccacct 679

                                                                       
Query: 473 gcctctgcctcccaagtgcatgtgccaccaccgccaggcaaactgtagcttttttaaggt 532
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcctctgcctcccaagtgcatgcgccaccaccgccaggcaaactgtagcttttttaaggt 739

                                           
Query: 533 atgctgtgtatgtgtggtaggaggggagaggt 564
           ||||||||||||||||||||||||||||||||
Sbjct: 740 atgctgtgtatgtgtggtaggaggggagaggt 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space:   527962
Effective search space used:   527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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