Query= MSMg01no049_n01.b1 MSMg01no049_n01.b1 CHROMAT_FILE:
MSMg01no049_n01.b1 PHD_FILE: MSMg01no049_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:13 2005
(791 letters)
>mm_chr11_53409738_53410928
Length = 1191
Score = 1311 bits (678), Expect = 0.0
Identities = 736/764 (96%), Gaps = 18/764 (2%)
Strand = Plus / Minus
Query: 32 gagtgctggcattaaaggtgtgtactatcgctacccagcctgcatcaagcatttaaaaat 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1191 gagtgctggcattaaaggtgtgtactatcgctacccagcctgcatcaagcatttaaaaat 1132
Query: 92 agatactccttgggctggagagctggcttactgattaagagcaattgctcttgcagaggt 151
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1131 atatactccttgggctggagagctggcttactgattaagagcaattgctcttgcagaggt 1072
Query: 152 tcagttcccggcacctacgtggtggctcacaactctaattccaggggcagctgacacctc 211
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 tcagttcccagcacctacgtggtggctcacaactctaattccaggggcagctgacacctc 1012
Query: 212 atctctgtgggcactggtcactagtcatgcccacagtacacatatatacatatagggaaa 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 atctctgtgggcactggtcactagtcatgcccacagtacacatatatacatatagggaaa 952
Query: 272 acatccatatacataaaaataaatttaagtacacacacatacacatacacatacacacac 331
|||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 951 acatccatatacataaaaataaatttaagtacacacac--------acac--acacacac 902
Query: 332 acacacttcttaggaacacatgcacatactattcaactacataaaaacaaaaagttaaag 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 acacacttcttaggaacacatgcacatactattcaactacataaaaacaaaaagttaaag 842
Query: 392 ttgggatcccaggagtcagaaggacagaaaggcggggctggaagagacagagaaacagaa 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttgggatcccaggagtcagaaggacagaaaggcggggctggaagagacagagaaacagaa 782
Query: 452 agtctgggaaaccatctggctaagaacaggttacagtctagatttcagctctgattttgg 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agtctgggaaaccatctggctaagaacaggttacagtctagatttcagctctgattttgg 722
Query: 512 gtaatgaggtaatggaactaggacatcctcaagtgtcccagaagcccaggactgattctg 571
|||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||||||||
Sbjct: 721 gtaatgagttaatggaactagggcatcctgaagtgtcccagaagcccagaactgattctg 662
Query: 572 gatactcagagtcaaaggggaaaagttcagacaaatttctcagagctacactgagattca 631
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 661 gatactcagagtcaaaggggaaaagttcagacaaatttctcagatctacactgagattca 602
Query: 632 caacactaaaaacaaaaacaa----aaaacaaccacccattaaagtgtaaagagatatgc 687
||||||||||||||||||||| |||||| || |||||||||||| |||||||||
Sbjct: 601 caacactaaaaacaaaaacaaagacaaaaca--ca--cattaaagtgtattgagatatgc 546
Query: 688 tagaaggtgggctggagagatggctctggggctaagagtgcccactgctcttgcagacaa 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tagaaggtgggctggagagatggctctggggctaagagtgcccactgctcttgcagacaa 486
Query: 748 ctggtgctcctagcacccacatccagcagctcacaacctcctgg 791
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 485 ctggtgctcctagcacccacatccagcagctcacaatctcctgg 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 791
Length of database: 1191
Length adjustment: 10
Effective length of query: 781
Effective length of database: 1181
Effective search space: 922361
Effective search space used: 922361
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no049_n01.g1 MSMg01no049_n01.g1 CHROMAT_FILE:
MSMg01no049_n01.g1 PHD_FILE: MSMg01no049_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:13 2005
(104 letters)
>mm_chr11_53382321_53382824
Length = 504
Score = 186 bits (96), Expect = 4e-52
Identities = 102/104 (98%)
Strand = Plus / Plus
Query: 1 cgtgcttcatgggacccagtatcagaacccaacaaaaatactttgaggcaaataaaagga 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 cgtgcttcatgggacccagtatcagaacaaaacaaaaatactttgaggcaaataaaagga 260
Query: 61 ttttatgggttgaattcagacccttgattccttgtttgaatctc 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttatgggttgaattcagacccttgattccttgtttgaatctc 304
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 504
Length adjustment: 8
Effective length of query: 96
Effective length of database: 496
Effective search space: 47616
Effective search space used: 47616
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
|
